Wall clock time and date at job start Tue Mar 31 2020 18:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46952 * 2 1 4 4 O 1.42896 * 109.47243 * 120.00677 * 2 1 3 5 5 C 1.35903 * 117.00040 * 274.98101 * 4 2 1 6 6 C 1.38774 * 120.03991 * 5.44379 * 5 4 2 7 7 C 1.38132 * 119.99383 * 179.97438 * 6 5 4 8 8 C 1.38250 * 120.08057 * 359.97438 * 7 6 5 9 9 C 1.38479 * 120.08470 * 0.02562 * 8 7 6 10 10 F 1.35102 * 119.99711 * 179.97438 * 9 8 7 11 11 C 1.38386 * 120.00405 * 0.02562 * 9 8 7 12 12 C 1.50702 * 109.46895 * 240.00909 * 2 1 3 13 13 O 1.21291 * 119.99643 * 244.99583 * 12 2 1 14 14 N 1.34774 * 120.00227 * 64.99661 * 12 2 1 15 15 C 1.40157 * 119.99757 * 179.97438 * 14 12 2 16 16 C 1.40404 * 125.97662 * 359.71519 * 15 14 12 17 17 C 1.35236 * 107.86816 * 179.82441 * 16 15 14 18 18 N 1.34968 * 107.86062 * 0.43382 * 17 16 15 19 19 C 1.46506 * 125.97014 * 179.68742 * 18 17 16 20 20 C 1.50699 * 109.46530 * 125.02120 * 19 18 17 21 21 H 1.08000 * 120.00422 * 359.97438 * 20 19 18 22 22 C 1.37883 * 119.99725 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99764 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00082 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47024 * 90.00010 * 24 22 20 26 26 H 1.48501 * 109.47064 * 209.99731 * 24 22 20 27 27 H 1.48494 * 109.47220 * 329.99949 * 24 22 20 28 28 N 1.31224 * 125.97168 * 180.02562 * 15 14 12 29 29 H 1.09003 * 109.46451 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46555 * 299.99138 * 1 2 3 31 31 H 1.08992 * 109.47341 * 59.99427 * 1 2 3 32 32 H 1.08001 * 120.00105 * 0.25872 * 6 5 4 33 33 H 1.07998 * 119.96093 * 180.02562 * 7 6 5 34 34 H 1.08002 * 119.95854 * 179.97438 * 8 7 6 35 35 H 1.07998 * 120.03870 * 179.97438 * 11 9 8 36 36 H 0.96997 * 119.99955 * 0.02562 * 14 12 2 37 37 H 1.08004 * 126.06979 * 0.02562 * 16 15 14 38 38 H 1.08008 * 126.06921 * 180.13876 * 17 16 15 39 39 H 1.09002 * 109.46768 * 245.00882 * 19 18 17 40 40 H 1.08992 * 109.47816 * 5.01841 * 19 18 17 41 41 H 0.97003 * 119.99711 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.1129 0.0624 2.3040 6 6 1.6607 1.3742 2.3274 7 6 1.7690 2.1215 3.4841 8 6 2.3271 1.5640 4.6195 9 6 2.7794 0.2553 4.5998 10 9 3.3250 -0.2875 5.7102 11 6 2.6736 -0.4961 3.4426 12 6 2.0323 -0.7102 -1.2306 13 8 2.6530 -1.7466 -1.1217 14 7 1.7918 -0.1939 -2.4521 15 6 2.2595 -0.8542 -3.5965 16 6 2.9925 -2.0516 -3.6162 17 6 3.2486 -2.3600 -4.9078 18 7 2.7091 -1.3928 -5.6792 19 6 2.7594 -1.3308 -7.1421 20 6 1.3596 -1.2146 -7.6882 21 1 0.5169 -1.1899 -7.0132 22 6 1.1548 -1.1398 -9.0496 23 7 -0.0668 -1.0389 -9.5262 24 14 2.6124 -1.1818 -10.2171 25 1 2.9080 -2.5886 -10.5895 26 1 2.2897 -0.4034 -11.4399 27 1 3.7982 -0.5867 -9.5501 28 7 2.0937 -0.4585 -4.8366 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.2199 1.8093 1.4426 33 1 1.4165 3.1421 3.5018 34 1 2.4112 2.1502 5.5227 35 1 3.0266 -1.5167 3.4265 36 1 1.2957 0.6351 -2.5391 37 1 3.2950 -2.6262 -2.7532 38 1 3.7928 -3.2242 -5.2593 39 1 3.3423 -0.4624 -7.4490 40 1 3.2261 -2.2368 -7.5284 41 1 -0.2109 -0.9867 -10.4841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117711954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:15 Heat of formation + Delta-G solvation = 3.908075 kcal Electronic energy + Delta-G solvation = -26775.507024 eV Core-core repulsion = 22573.073930 eV Total energy + Delta-G solvation = -4202.433094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.29381 -41.18468 -40.57990 -39.29645 -37.55605 -34.97368 -33.49298 -32.65636 -31.31158 -30.75327 -30.14039 -29.47460 -27.30012 -25.32114 -23.51829 -23.25721 -22.44236 -21.46054 -20.29514 -19.69758 -19.00616 -17.74424 -17.12396 -16.80880 -16.74095 -16.52587 -16.31928 -16.02382 -15.77495 -15.47401 -14.98695 -14.79994 -14.35827 -14.21431 -13.98869 -13.63414 -13.39668 -13.20240 -12.92718 -12.76944 -12.59479 -12.41536 -12.33099 -12.18856 -12.03209 -11.54981 -11.39154 -11.20236 -10.81227 -10.72658 -10.14687 -10.06378 -9.72526 -9.58323 -9.33131 -8.80572 -8.74317 -8.29517 -7.63429 -6.27498 -4.30125 0.67722 0.83768 2.03139 2.08512 2.73926 2.93834 3.12815 3.14048 3.19439 3.21652 3.53912 3.63101 3.93533 4.15320 4.19350 4.32127 4.36686 4.44614 4.53982 4.58426 4.81285 4.93713 5.00029 5.15060 5.18609 5.36522 5.49823 5.59738 5.62316 5.67604 5.77411 5.85722 6.04711 6.21935 6.30938 6.35480 6.45927 6.60095 6.84989 7.17376 7.21519 7.44397 7.73485 8.01957 8.28249 8.45968 8.81583 9.27228 10.85080 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.033866 B = 0.001899 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.589101 B =14744.162104 C =15152.768922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.073 3.927 3 H 0.105 0.895 4 O -0.278 6.278 5 C 0.164 3.836 6 C -0.224 4.224 7 C -0.049 4.049 8 C -0.194 4.194 9 C 0.140 3.860 10 F -0.134 7.134 11 C -0.187 4.187 12 C 0.523 3.477 13 O -0.492 6.492 14 N -0.624 5.624 15 C 0.259 3.741 16 C -0.284 4.284 17 C 0.053 3.947 18 N -0.317 5.317 19 C 0.231 3.769 20 C -0.536 4.536 21 H 0.086 0.914 22 C 0.076 3.924 23 N -0.887 5.887 24 Si 0.873 3.127 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.264 1.264 28 N -0.293 5.293 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.413 0.587 37 H 0.162 0.838 38 H 0.170 0.830 39 H 0.043 0.957 40 H 0.050 0.950 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 6.170 25.292 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.013 3.987 3 H 0.123 0.877 4 O -0.190 6.190 5 C 0.117 3.883 6 C -0.242 4.242 7 C -0.067 4.067 8 C -0.213 4.213 9 C 0.120 3.880 10 F -0.112 7.112 11 C -0.207 4.207 12 C 0.307 3.693 13 O -0.363 6.363 14 N -0.274 5.274 15 C 0.006 3.994 16 C -0.315 4.315 17 C -0.096 4.096 18 N -0.099 5.099 19 C 0.112 3.888 20 C -0.574 4.574 21 H 0.104 0.896 22 C -0.128 4.128 23 N -0.524 5.524 24 Si 0.699 3.301 25 H -0.197 1.197 26 H -0.205 1.205 27 H -0.189 1.189 28 N -0.124 5.124 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.164 0.836 36 H 0.248 0.752 37 H 0.179 0.821 38 H 0.188 0.812 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.670 6.083 24.321 25.337 hybrid contribution 0.674 -0.131 -0.241 0.727 sum 4.344 5.951 24.080 25.182 Atomic orbital electron populations 1.22398 0.91834 1.05165 1.04345 1.22149 0.96160 0.96932 0.83445 0.87718 1.86217 1.80567 1.36674 1.15541 1.18641 0.93454 0.89907 0.86250 1.21419 1.07811 0.94223 1.00776 1.20796 0.95143 0.99638 0.91099 1.21074 1.05080 0.94316 1.00818 1.17284 0.96259 0.91937 0.82507 1.91527 1.83155 1.86135 1.50430 1.20287 1.07034 1.02595 0.90738 1.19905 0.80479 0.85740 0.83189 1.90699 1.37821 1.22185 1.85560 1.42193 1.55711 1.26802 1.02645 1.19016 0.99688 0.94288 0.86394 1.21550 1.12122 1.00455 0.97350 1.22576 1.00433 0.95605 0.91016 1.48640 1.38364 1.15487 1.07364 1.20076 1.00225 0.98338 0.70114 1.21093 0.90801 1.52478 0.92991 0.89636 1.24837 0.95929 0.94229 0.97773 1.69872 1.20057 1.48714 1.13739 0.86903 0.83011 0.78898 0.81272 1.19686 1.20506 1.18869 1.77393 1.21543 1.15870 0.97610 0.90112 0.90233 0.89617 0.84348 0.84488 0.84554 0.83611 0.75177 0.82082 0.81235 0.93947 0.93236 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 9.13 37.16 0.34 -0.93 16 2 C 0.07 0.67 2.63 -27.88 -0.07 0.60 16 3 H 0.11 0.66 6.31 -51.93 -0.33 0.34 16 4 O -0.28 -3.13 9.34 -39.29 -0.37 -3.49 16 5 C 0.16 1.55 6.60 -39.23 -0.26 1.29 16 6 C -0.22 -1.56 8.25 -39.42 -0.33 -1.88 16 7 C -0.05 -0.29 10.04 -39.62 -0.40 -0.69 16 8 C -0.19 -1.35 10.02 -39.49 -0.40 -1.74 16 9 C 0.14 1.23 7.30 -39.44 -0.29 0.95 16 10 F -0.13 -1.28 17.27 2.25 0.04 -1.24 16 11 C -0.19 -1.79 9.97 -39.37 -0.39 -2.18 16 12 C 0.52 7.05 7.15 -10.99 -0.08 6.97 16 13 O -0.49 -8.51 13.64 -14.31 -0.20 -8.70 16 14 N -0.62 -8.75 5.41 -11.13 -0.06 -8.81 16 15 C 0.26 4.91 8.11 -154.39 -1.25 3.66 16 16 C -0.28 -5.34 9.60 -39.84 -0.38 -5.73 16 17 C 0.05 0.99 11.44 -17.24 -0.20 0.80 16 18 N -0.32 -6.96 3.67 -62.56 -0.23 -7.19 16 19 C 0.23 5.34 5.33 -5.19 -0.03 5.31 16 20 C -0.54 -14.79 9.79 -34.44 -0.34 -15.13 16 21 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 22 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 23 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 24 Si 0.87 19.77 27.47 -169.99 -4.67 15.10 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 28 N -0.29 -6.44 12.42 31.44 0.39 -6.05 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.43 6.91 -51.93 -0.36 0.07 16 31 H 0.09 0.48 7.92 -51.93 -0.41 0.07 16 32 H 0.14 0.67 5.42 -52.49 -0.28 0.38 16 33 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 34 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.41 4.41 8.61 -40.82 -0.35 4.05 16 37 H 0.16 2.97 5.92 -52.48 -0.31 2.66 16 38 H 0.17 2.49 8.06 -52.48 -0.42 2.07 16 39 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 40 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 357.27 15.07 5.38 5.38 Total: -1.00 -34.63 357.27 -7.61 -42.24 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.51 Total: 4.84 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -4.16 Total: -6.70 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.87 Total: -47.42 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.56 Total: -12.20 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.67 Total: 15.10 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.63 -7.61 -42.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117711954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.147 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds