Wall clock time and date at job start Tue Mar 31 2020 18:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46952 * 2 1 4 4 O 1.42896 * 109.47243 * 120.00677 * 2 1 3 5 5 C 1.35903 * 117.00040 * 274.98101 * 4 2 1 6 6 C 1.38774 * 120.03991 * 5.44379 * 5 4 2 7 7 C 1.38132 * 119.99383 * 179.97438 * 6 5 4 8 8 C 1.38250 * 120.08057 * 359.97438 * 7 6 5 9 9 C 1.38479 * 120.08470 * 0.02562 * 8 7 6 10 10 F 1.35102 * 119.99711 * 179.97438 * 9 8 7 11 11 C 1.38386 * 120.00405 * 0.02562 * 9 8 7 12 12 C 1.50702 * 109.46895 * 240.00909 * 2 1 3 13 13 O 1.21291 * 119.99643 * 244.99583 * 12 2 1 14 14 N 1.34774 * 120.00227 * 64.99661 * 12 2 1 15 15 C 1.40157 * 119.99757 * 179.97438 * 14 12 2 16 16 C 1.40404 * 125.97662 * 359.71519 * 15 14 12 17 17 C 1.35236 * 107.86816 * 179.82441 * 16 15 14 18 18 N 1.34968 * 107.86062 * 0.43382 * 17 16 15 19 19 C 1.46506 * 125.97014 * 179.68742 * 18 17 16 20 20 C 1.50699 * 109.46530 * 125.02120 * 19 18 17 21 21 H 1.08000 * 120.00422 * 359.97438 * 20 19 18 22 22 C 1.37883 * 119.99725 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99764 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00082 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47024 * 90.00010 * 24 22 20 26 26 H 1.48501 * 109.47064 * 209.99731 * 24 22 20 27 27 H 1.48494 * 109.47220 * 329.99949 * 24 22 20 28 28 N 1.31224 * 125.97168 * 180.02562 * 15 14 12 29 29 H 1.09003 * 109.46451 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46555 * 299.99138 * 1 2 3 31 31 H 1.08992 * 109.47341 * 59.99427 * 1 2 3 32 32 H 1.08001 * 120.00105 * 0.25872 * 6 5 4 33 33 H 1.07998 * 119.96093 * 180.02562 * 7 6 5 34 34 H 1.08002 * 119.95854 * 179.97438 * 8 7 6 35 35 H 1.07998 * 120.03870 * 179.97438 * 11 9 8 36 36 H 0.96997 * 119.99955 * 0.02562 * 14 12 2 37 37 H 1.08004 * 126.06979 * 0.02562 * 16 15 14 38 38 H 1.08008 * 126.06921 * 180.13876 * 17 16 15 39 39 H 1.09002 * 109.46768 * 245.00882 * 19 18 17 40 40 H 1.08992 * 109.47816 * 5.01841 * 19 18 17 41 41 H 0.97003 * 119.99711 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.1129 0.0624 2.3040 6 6 1.6607 1.3742 2.3274 7 6 1.7690 2.1215 3.4841 8 6 2.3271 1.5640 4.6195 9 6 2.7794 0.2553 4.5998 10 9 3.3250 -0.2875 5.7102 11 6 2.6736 -0.4961 3.4426 12 6 2.0323 -0.7102 -1.2306 13 8 2.6530 -1.7466 -1.1217 14 7 1.7918 -0.1939 -2.4521 15 6 2.2595 -0.8542 -3.5965 16 6 2.9925 -2.0516 -3.6162 17 6 3.2486 -2.3600 -4.9078 18 7 2.7091 -1.3928 -5.6792 19 6 2.7594 -1.3308 -7.1421 20 6 1.3596 -1.2146 -7.6882 21 1 0.5169 -1.1899 -7.0132 22 6 1.1548 -1.1398 -9.0496 23 7 -0.0668 -1.0389 -9.5262 24 14 2.6124 -1.1818 -10.2171 25 1 2.9080 -2.5886 -10.5895 26 1 2.2897 -0.4034 -11.4399 27 1 3.7982 -0.5867 -9.5501 28 7 2.0937 -0.4585 -4.8366 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.2199 1.8093 1.4426 33 1 1.4165 3.1421 3.5018 34 1 2.4112 2.1502 5.5227 35 1 3.0266 -1.5167 3.4265 36 1 1.2957 0.6351 -2.5391 37 1 3.2950 -2.6262 -2.7532 38 1 3.7928 -3.2242 -5.2593 39 1 3.3423 -0.4624 -7.4490 40 1 3.2261 -2.2368 -7.5284 41 1 -0.2109 -0.9867 -10.4841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117711954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:14 Heat of formation + Delta-G solvation = -18.247741 kcal Electronic energy + Delta-G solvation = -26776.467772 eV Core-core repulsion = 22573.073930 eV Total energy + Delta-G solvation = -4203.393842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.97629 -42.37551 -41.61759 -40.35822 -38.26589 -36.33103 -35.28117 -33.72100 -32.75058 -31.46760 -31.00275 -30.72195 -29.03291 -26.21360 -24.66786 -24.01065 -23.68635 -22.60205 -21.72236 -20.95296 -19.69839 -19.10097 -18.74944 -18.06941 -17.51012 -17.33491 -17.16213 -16.93368 -16.72405 -16.61948 -16.25337 -15.87145 -15.79292 -15.22484 -14.86199 -14.77084 -14.68405 -14.37960 -14.01773 -13.89787 -13.85991 -13.61698 -13.33990 -13.01628 -12.90888 -12.61295 -12.52449 -12.35111 -12.15097 -12.00888 -11.83316 -11.66235 -11.48328 -10.90194 -10.86576 -9.93247 -9.81723 -9.36203 -9.16624 -8.37241 -6.47418 0.09187 0.25153 0.82582 1.00701 1.34538 1.37755 1.39984 1.49549 1.86434 2.13215 2.29180 2.43000 2.57055 2.95381 3.26996 3.34620 3.61588 3.78051 3.79291 3.90813 3.99310 4.07609 4.17625 4.21819 4.40592 4.58777 4.62195 4.65181 4.71424 4.85019 4.86700 5.00131 5.05965 5.08366 5.13114 5.21297 5.24323 5.33106 5.66375 5.81924 5.98307 6.09090 6.25802 6.38525 6.58113 6.86690 7.01187 7.15419 8.79593 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.033866 B = 0.001899 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.589101 B =14744.162104 C =15152.768922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 H 0.142 0.858 4 O -0.307 6.307 5 C 0.145 3.855 6 C -0.217 4.217 7 C -0.041 4.041 8 C -0.190 4.190 9 C 0.121 3.879 10 F -0.144 7.144 11 C -0.208 4.208 12 C 0.522 3.478 13 O -0.534 6.534 14 N -0.615 5.615 15 C 0.266 3.734 16 C -0.298 4.298 17 C 0.062 3.938 18 N -0.342 5.342 19 C 0.238 3.762 20 C -0.546 4.546 21 H 0.028 0.972 22 C 0.014 3.986 23 N -0.941 5.941 24 Si 0.954 3.046 25 H -0.255 1.255 26 H -0.281 1.281 27 H -0.239 1.239 28 N -0.340 5.340 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.166 0.834 33 H 0.174 0.826 34 H 0.157 0.843 35 H 0.133 0.867 36 H 0.428 0.572 37 H 0.165 0.835 38 H 0.210 0.790 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.985 7.815 25.783 27.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.022 3.978 3 H 0.159 0.841 4 O -0.220 6.220 5 C 0.099 3.901 6 C -0.235 4.235 7 C -0.059 4.059 8 C -0.209 4.209 9 C 0.102 3.898 10 F -0.123 7.123 11 C -0.228 4.228 12 C 0.308 3.692 13 O -0.407 6.407 14 N -0.266 5.266 15 C 0.011 3.989 16 C -0.328 4.328 17 C -0.086 4.086 18 N -0.124 5.124 19 C 0.119 3.881 20 C -0.584 4.584 21 H 0.046 0.954 22 C -0.184 4.184 23 N -0.580 5.580 24 Si 0.775 3.225 25 H -0.179 1.179 26 H -0.207 1.207 27 H -0.162 1.162 28 N -0.171 5.171 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.183 0.817 33 H 0.192 0.808 34 H 0.175 0.825 35 H 0.151 0.849 36 H 0.267 0.733 37 H 0.182 0.818 38 H 0.227 0.773 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.894 7.748 24.863 26.498 hybrid contribution 0.203 -0.637 -0.202 0.699 sum 5.097 7.111 24.661 26.167 Atomic orbital electron populations 1.22437 0.89953 1.04602 1.06380 1.22239 0.97247 0.97425 0.80873 0.84091 1.86168 1.81292 1.38114 1.16429 1.18786 0.94743 0.91044 0.85500 1.21743 1.06669 0.92925 1.02197 1.21243 0.93665 1.00981 0.89967 1.21416 1.03884 0.93371 1.02182 1.17509 0.97334 0.92933 0.82064 1.91495 1.83502 1.86472 1.50833 1.20348 1.08178 1.02524 0.91739 1.20823 0.79169 0.85241 0.83919 1.90670 1.39698 1.24215 1.86147 1.42302 1.55516 1.27180 1.01624 1.19388 0.98339 0.94278 0.86893 1.21746 1.12630 1.00768 0.97703 1.23240 0.99170 0.95571 0.90616 1.48530 1.40038 1.16728 1.07124 1.19914 0.97292 0.99811 0.71104 1.21217 0.91774 1.52705 0.92737 0.95364 1.25910 0.99486 0.93281 0.99773 1.70047 1.23159 1.50319 1.14442 0.85629 0.79033 0.79834 0.77970 1.17913 1.20663 1.16198 1.77311 1.23566 1.17391 0.98787 0.92050 0.87800 0.87902 0.81710 0.80832 0.82508 0.84937 0.73286 0.81802 0.77303 0.93481 0.90105 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 9.13 71.98 0.66 -1.45 16 2 C 0.08 1.36 2.63 29.85 0.08 1.44 16 3 H 0.14 1.30 6.31 -2.39 -0.02 1.28 16 4 O -0.31 -6.76 9.34 -73.47 -0.69 -7.45 16 5 C 0.14 2.59 6.60 22.50 0.15 2.74 16 6 C -0.22 -2.32 8.25 22.37 0.18 -2.14 16 7 C -0.04 -0.33 10.04 22.25 0.22 -0.11 16 8 C -0.19 -2.18 10.02 22.33 0.22 -1.96 16 9 C 0.12 2.09 7.30 22.36 0.16 2.26 16 10 F -0.14 -2.81 17.27 44.97 0.78 -2.04 16 11 C -0.21 -4.09 9.97 22.41 0.22 -3.86 16 12 C 0.52 13.80 7.15 87.66 0.63 14.43 16 13 O -0.53 -18.74 13.64 15.93 0.22 -18.52 16 14 N -0.61 -16.90 5.41 -307.52 -1.66 -18.56 16 15 C 0.27 10.09 8.11 133.32 1.08 11.17 16 16 C -0.30 -11.15 9.60 22.10 0.21 -10.94 16 17 C 0.06 2.25 11.44 83.52 0.96 3.21 16 18 N -0.34 -14.94 3.67 -351.83 -1.29 -16.24 16 19 C 0.24 10.77 5.33 85.63 0.46 11.23 16 20 C -0.55 -30.89 9.79 25.60 0.25 -30.64 16 21 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 22 C 0.01 0.80 5.47 84.66 0.46 1.27 16 23 N -0.94 -57.09 13.96 21.45 0.30 -56.79 16 24 Si 0.95 39.97 27.47 68.60 1.88 41.86 16 25 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.24 -8.98 6.54 99.48 0.65 -8.33 16 28 N -0.34 -15.14 12.42 -54.45 -0.68 -15.82 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 0.77 6.91 -2.39 -0.02 0.75 16 31 H 0.10 0.88 7.92 -2.39 -0.02 0.86 16 32 H 0.17 0.79 5.42 -2.91 -0.02 0.78 16 33 H 0.17 0.17 8.06 -2.91 -0.02 0.15 16 34 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.43 8.65 8.61 -92.71 -0.80 7.86 16 37 H 0.16 6.08 5.92 -2.91 -0.02 6.06 16 38 H 0.21 5.57 8.06 -2.91 -0.02 5.55 16 39 H 0.05 2.08 7.20 -2.39 -0.02 2.06 16 40 H 0.08 3.14 7.50 -2.39 -0.02 3.12 16 41 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -81.08 357.27 5.05 -76.03 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.24 Total: 20.90 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 5.95 Total: -3.37 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -3.33 Total: -107.41 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.47 Total: -25.97 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 1.88 Total: 41.86 kcal Total: -81.08 5.05 -76.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117711954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.784 kcal (2) G-P(sol) polarization free energy of solvation -81.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds