Wall clock time and date at job start Tue Mar 31 2020 18:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.46992 * 2 1 4 4 C 1.36926 * 120.00082 * 269.93982 * 3 2 1 5 5 H 1.08000 * 119.99973 * 322.06603 * 4 3 2 6 6 C 1.38818 * 120.00086 * 142.06700 * 4 3 2 7 7 N 1.31618 * 120.00142 * 157.05890 * 6 4 3 8 8 Si 1.86799 * 119.99850 * 337.05640 * 6 4 3 9 9 H 1.48498 * 109.46956 * 95.70926 * 8 6 4 10 10 H 1.48500 * 109.47348 * 215.70851 * 8 6 4 11 11 H 1.48500 * 109.47092 * 335.71023 * 8 6 4 12 12 C 1.46503 * 119.99786 * 89.93977 * 3 2 1 13 13 C 1.50698 * 109.47000 * 90.00034 * 12 3 2 14 14 O 1.21268 * 120.00144 * 359.97438 * 13 12 3 15 15 N 1.34781 * 119.99884 * 179.72458 * 13 12 3 16 16 C 1.46500 * 120.00257 * 359.97438 * 15 13 12 17 17 C 1.53002 * 109.46810 * 90.00138 * 16 15 13 18 18 C 1.38545 * 119.99973 * 180.02562 * 15 13 12 19 19 N 1.28784 * 124.81576 * 179.70028 * 18 15 13 20 20 C 1.34745 * 117.92042 * 179.77301 * 19 18 15 21 21 C 1.41131 * 128.75240 * 180.21259 * 20 19 18 22 22 C 1.37165 * 120.43347 * 180.32235 * 21 20 19 23 23 C 1.38738 * 120.60791 * 359.97438 * 22 21 20 24 24 C 1.37685 * 119.98708 * 0.02562 * 23 22 21 25 25 C 1.39288 * 120.19957 * 0.02632 * 24 23 22 26 26 S 1.75808 * 124.81479 * 359.97438 * 18 15 13 27 27 H 1.08995 * 109.47195 * 60.00143 * 1 2 3 28 28 H 1.08999 * 109.46997 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47422 * 299.99892 * 1 2 3 30 30 H 1.08996 * 109.47401 * 240.00140 * 2 1 3 31 31 H 1.09006 * 109.47235 * 119.99356 * 2 1 3 32 32 H 0.97000 * 120.00169 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47614 * 330.00332 * 12 3 2 34 34 H 1.09001 * 109.47377 * 209.99727 * 12 3 2 35 35 H 1.08994 * 109.47383 * 210.00206 * 16 15 13 36 36 H 1.09000 * 109.46934 * 330.00805 * 16 15 13 37 37 H 1.08992 * 109.47369 * 180.02562 * 17 16 15 38 38 H 1.09005 * 109.47273 * 300.00598 * 17 16 15 39 39 H 1.09003 * 109.47067 * 59.99872 * 17 16 15 40 40 H 1.08000 * 119.78297 * 0.29910 * 21 20 19 41 41 H 1.08002 * 119.69885 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.00816 * 180.02562 * 23 22 21 43 43 H 1.08003 * 119.90307 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2476 2.0264 -1.1858 5 1 2.6676 1.4867 -2.0217 6 6 1.9404 3.3741 -1.3136 7 7 2.5410 4.1019 -2.2311 8 14 0.6744 4.1546 -0.1833 9 1 1.3647 4.7997 0.9623 10 1 -0.0974 5.1764 -0.9353 11 1 -0.2504 3.1082 0.3216 12 6 2.2611 2.0723 1.2688 13 6 3.6840 1.8357 1.7053 14 8 4.4222 1.1564 1.0240 15 7 4.1375 2.3832 2.8503 16 6 3.2475 3.2088 3.6703 17 6 2.5189 2.3227 4.6828 18 6 5.4457 2.1661 3.2514 19 7 5.9760 2.6469 4.3219 20 6 7.2629 2.3423 4.5803 21 6 8.0613 2.7362 5.6754 22 6 9.3676 2.3277 5.7654 23 6 9.9248 1.5214 4.7835 24 6 9.1652 1.1246 3.7059 25 6 7.8372 1.5306 3.5973 26 16 6.6194 1.2006 2.3675 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.3260 5.0435 -2.3206 33 1 1.5797 1.6884 2.0280 34 1 2.0943 3.1415 1.1380 35 1 3.8338 3.9594 4.2002 36 1 2.5178 3.7036 3.0293 37 1 1.8564 2.9368 5.2926 38 1 1.9325 1.5719 4.1529 39 1 3.2485 1.8278 5.3238 40 1 7.6410 3.3638 6.4474 41 1 9.9677 2.6359 6.6088 42 1 10.9543 1.2051 4.8643 43 1 9.6005 0.4973 2.9421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121002379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:54 Heat of formation + Delta-G solvation = 61.258069 kcal Electronic energy + Delta-G solvation = -26588.318681 eV Core-core repulsion = 22954.585646 eV Total energy + Delta-G solvation = -3633.733035 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.47685 -39.70570 -37.10529 -35.91736 -35.39454 -32.06803 -31.00907 -30.96342 -30.25471 -29.16148 -27.27183 -24.52162 -23.96318 -23.52414 -22.94598 -21.43880 -20.29604 -19.48772 -18.27490 -17.28796 -17.22187 -16.72206 -16.02382 -15.50358 -15.20494 -15.06345 -14.55050 -14.38409 -14.09485 -13.88054 -13.82561 -13.63792 -13.42560 -12.88467 -12.77753 -12.39166 -12.31148 -12.20406 -11.91196 -11.84751 -11.75699 -11.51178 -11.22330 -10.96172 -10.83528 -10.67772 -10.35868 -10.13788 -9.96361 -9.79712 -9.76810 -9.54755 -9.46092 -8.68958 -7.98227 -7.89008 -7.09632 -6.15263 -3.57645 0.59591 1.19593 1.21010 2.01695 2.29477 2.66726 3.03018 3.07941 3.31726 3.34340 3.78707 4.27463 4.32250 4.67158 4.74160 4.89715 4.92319 4.98218 5.15289 5.18634 5.23606 5.38190 5.39454 5.48060 5.65015 5.73968 5.75922 5.81740 5.87148 5.87610 6.09609 6.15203 6.16288 6.18730 6.22359 6.37939 6.39109 6.55235 6.69549 6.71291 6.95432 7.02759 7.82375 7.84638 8.23319 8.27901 8.77576 9.50760 9.87293 10.99666 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.003657 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.786937 B = 7654.761207 C = 7850.960395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.147 3.853 3 N -0.574 5.574 4 C -0.267 4.267 5 H 0.084 0.916 6 C 0.037 3.963 7 N -0.886 5.886 8 Si 0.859 3.141 9 H -0.284 1.284 10 H -0.293 1.293 11 H -0.259 1.259 12 C 0.128 3.872 13 C 0.482 3.518 14 O -0.473 6.473 15 N -0.524 5.524 16 C 0.103 3.897 17 C -0.167 4.167 18 C 0.338 3.662 19 N -0.527 5.527 20 C 0.116 3.884 21 C -0.082 4.082 22 C -0.107 4.107 23 C -0.125 4.125 24 C -0.060 4.060 25 C -0.233 4.233 26 S 0.169 5.831 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.038 0.962 32 H 0.266 0.734 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.023 -4.075 16.401 17.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.022 3.978 3 N -0.293 5.293 4 C -0.396 4.396 5 H 0.101 0.899 6 C -0.164 4.164 7 N -0.526 5.526 8 Si 0.688 3.312 9 H -0.213 1.213 10 H -0.220 1.220 11 H -0.183 1.183 12 C -0.004 4.004 13 C 0.269 3.731 14 O -0.342 6.342 15 N -0.255 5.255 16 C -0.021 4.021 17 C -0.226 4.226 18 C -0.034 4.034 19 N -0.251 5.251 20 C -0.005 4.005 21 C -0.103 4.103 22 C -0.128 4.128 23 C -0.147 4.147 24 C -0.083 4.083 25 C -0.352 4.352 26 S 0.422 5.578 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.869 -4.585 15.091 16.829 hybrid contribution -0.182 1.147 1.373 1.798 sum 5.686 -3.438 16.465 17.755 Atomic orbital electron populations 1.22311 0.98975 0.99629 1.01837 1.20911 0.91836 0.85279 0.99794 1.43907 1.72762 1.11853 1.00762 1.18815 1.37146 0.93499 0.90119 0.89866 1.25507 0.97644 0.96672 0.96604 1.69887 1.40012 1.06973 1.35710 0.87188 0.84250 0.79363 0.80374 1.21268 1.22048 1.18343 1.21589 0.88298 0.99866 0.90633 1.24312 0.93841 0.77759 0.77211 1.90547 1.56755 1.36395 1.50513 1.46264 1.06301 1.49260 1.23680 1.21831 0.92990 0.93526 0.93704 1.22153 1.00660 1.00526 0.99222 1.24060 0.91513 0.95487 0.92367 1.66249 1.11232 1.28823 1.18823 1.18771 0.88169 0.97486 0.96078 1.20554 0.93014 1.00606 0.96175 1.20838 0.94514 0.98271 0.99204 1.20994 0.99763 0.99465 0.94493 1.20265 0.90605 0.99135 0.98280 1.24507 1.01303 1.07100 1.02294 1.86311 0.99223 1.51305 1.20961 0.92192 0.93819 0.93957 0.92325 0.94305 0.92420 0.90137 0.89329 0.88592 0.89059 0.90771 0.92118 0.91887 0.85399 0.85368 0.85378 0.85731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 10.24 37.15 0.38 -2.46 16 2 C 0.15 2.81 6.39 -4.04 -0.03 2.79 16 3 N -0.57 -13.01 1.56 -174.61 -0.27 -13.28 16 4 C -0.27 -7.21 9.90 -15.06 -0.15 -7.36 16 5 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 6 C 0.04 1.03 5.29 -17.43 -0.09 0.94 16 7 N -0.89 -26.22 13.97 55.49 0.78 -25.45 16 8 Si 0.86 19.97 25.10 -169.99 -4.27 15.71 16 9 H -0.28 -6.18 6.68 56.52 0.38 -5.80 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 12 C 0.13 2.56 3.55 -5.19 -0.02 2.54 16 13 C 0.48 9.79 7.70 -10.98 -0.08 9.71 16 14 O -0.47 -10.89 13.87 5.57 0.08 -10.81 16 15 N -0.52 -9.28 2.66 -116.32 -0.31 -9.59 16 16 C 0.10 1.45 5.76 -4.04 -0.02 1.43 16 17 C -0.17 -1.91 10.24 37.16 0.38 -1.53 16 18 C 0.34 6.14 7.82 -88.47 -0.69 5.44 16 19 N -0.53 -9.07 9.79 -11.05 -0.11 -9.17 16 20 C 0.12 1.85 6.94 -84.90 -0.59 1.26 16 21 C -0.08 -1.04 10.10 -38.87 -0.39 -1.44 16 22 C -0.11 -1.11 9.99 -39.79 -0.40 -1.50 16 23 C -0.13 -1.31 10.05 -39.60 -0.40 -1.70 16 24 C -0.06 -0.76 10.06 -39.39 -0.40 -1.16 16 25 C -0.23 -3.66 6.52 -38.60 -0.25 -3.92 16 26 S 0.17 3.02 20.41 -107.50 -2.19 0.82 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.15 8.04 -51.93 -0.42 0.74 16 31 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.08 1.33 7.13 -51.93 -0.37 0.96 16 34 H 0.09 1.89 2.62 -51.93 -0.14 1.75 16 35 H 0.10 1.30 7.60 -51.93 -0.39 0.90 16 36 H 0.09 1.26 6.43 -51.93 -0.33 0.92 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.69 7.23 -51.93 -0.38 0.31 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 42 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -31.95 365.22 -9.38 -41.33 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.83 Total: 1.91 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -2.75 Total: 3.04 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.09 Total: -57.50 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.27 Total: 15.71 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.19 Total: 0.82 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.95 -9.38 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121002379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.586 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds