Wall clock time and date at job start Tue Mar 31 2020 18:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.46992 * 2 1 4 4 C 1.36926 * 120.00082 * 269.93982 * 3 2 1 5 5 H 1.08000 * 119.99973 * 322.06603 * 4 3 2 6 6 C 1.38818 * 120.00086 * 142.06700 * 4 3 2 7 7 N 1.31618 * 120.00142 * 157.05890 * 6 4 3 8 8 Si 1.86799 * 119.99850 * 337.05640 * 6 4 3 9 9 H 1.48498 * 109.46956 * 95.70926 * 8 6 4 10 10 H 1.48500 * 109.47348 * 215.70851 * 8 6 4 11 11 H 1.48500 * 109.47092 * 335.71023 * 8 6 4 12 12 C 1.46503 * 119.99786 * 89.93977 * 3 2 1 13 13 C 1.50698 * 109.47000 * 90.00034 * 12 3 2 14 14 O 1.21268 * 120.00144 * 359.97438 * 13 12 3 15 15 N 1.34781 * 119.99884 * 179.72458 * 13 12 3 16 16 C 1.46500 * 120.00257 * 359.97438 * 15 13 12 17 17 C 1.53002 * 109.46810 * 90.00138 * 16 15 13 18 18 C 1.38545 * 119.99973 * 180.02562 * 15 13 12 19 19 N 1.28784 * 124.81576 * 179.70028 * 18 15 13 20 20 C 1.34745 * 117.92042 * 179.77301 * 19 18 15 21 21 C 1.41131 * 128.75240 * 180.21259 * 20 19 18 22 22 C 1.37165 * 120.43347 * 180.32235 * 21 20 19 23 23 C 1.38738 * 120.60791 * 359.97438 * 22 21 20 24 24 C 1.37685 * 119.98708 * 0.02562 * 23 22 21 25 25 C 1.39288 * 120.19957 * 0.02632 * 24 23 22 26 26 S 1.75808 * 124.81479 * 359.97438 * 18 15 13 27 27 H 1.08995 * 109.47195 * 60.00143 * 1 2 3 28 28 H 1.08999 * 109.46997 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47422 * 299.99892 * 1 2 3 30 30 H 1.08996 * 109.47401 * 240.00140 * 2 1 3 31 31 H 1.09006 * 109.47235 * 119.99356 * 2 1 3 32 32 H 0.97000 * 120.00169 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47614 * 330.00332 * 12 3 2 34 34 H 1.09001 * 109.47377 * 209.99727 * 12 3 2 35 35 H 1.08994 * 109.47383 * 210.00206 * 16 15 13 36 36 H 1.09000 * 109.46934 * 330.00805 * 16 15 13 37 37 H 1.08992 * 109.47369 * 180.02562 * 17 16 15 38 38 H 1.09005 * 109.47273 * 300.00598 * 17 16 15 39 39 H 1.09003 * 109.47067 * 59.99872 * 17 16 15 40 40 H 1.08000 * 119.78297 * 0.29910 * 21 20 19 41 41 H 1.08002 * 119.69885 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.00816 * 180.02562 * 23 22 21 43 43 H 1.08003 * 119.90307 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2476 2.0264 -1.1858 5 1 2.6676 1.4867 -2.0217 6 6 1.9404 3.3741 -1.3136 7 7 2.5410 4.1019 -2.2311 8 14 0.6744 4.1546 -0.1833 9 1 1.3647 4.7997 0.9623 10 1 -0.0974 5.1764 -0.9353 11 1 -0.2504 3.1082 0.3216 12 6 2.2611 2.0723 1.2688 13 6 3.6840 1.8357 1.7053 14 8 4.4222 1.1564 1.0240 15 7 4.1375 2.3832 2.8503 16 6 3.2475 3.2088 3.6703 17 6 2.5189 2.3227 4.6828 18 6 5.4457 2.1661 3.2514 19 7 5.9760 2.6469 4.3219 20 6 7.2629 2.3423 4.5803 21 6 8.0613 2.7362 5.6754 22 6 9.3676 2.3277 5.7654 23 6 9.9248 1.5214 4.7835 24 6 9.1652 1.1246 3.7059 25 6 7.8372 1.5306 3.5973 26 16 6.6194 1.2006 2.3675 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.3260 5.0435 -2.3206 33 1 1.5797 1.6884 2.0280 34 1 2.0943 3.1415 1.1380 35 1 3.8338 3.9594 4.2002 36 1 2.5178 3.7036 3.0293 37 1 1.8564 2.9368 5.2926 38 1 1.9325 1.5719 4.1529 39 1 3.2485 1.8278 5.3238 40 1 7.6410 3.3638 6.4474 41 1 9.9677 2.6359 6.6088 42 1 10.9543 1.2051 4.8643 43 1 9.6005 0.4973 2.9421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121002379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:54 Heat of formation + Delta-G solvation = 42.789777 kcal Electronic energy + Delta-G solvation = -26589.119526 eV Core-core repulsion = 22954.585646 eV Total energy + Delta-G solvation = -3634.533881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.83809 -40.92585 -38.42837 -37.54952 -36.62766 -34.05473 -32.16552 -31.95049 -31.69792 -30.37573 -28.90160 -26.00071 -25.43946 -24.69676 -24.01763 -22.70977 -21.82545 -20.79495 -19.64842 -18.90910 -18.52340 -18.18241 -17.49992 -16.82206 -16.68606 -16.17709 -16.09535 -15.62499 -15.43592 -15.17169 -15.03350 -14.92639 -14.71463 -14.67326 -14.08427 -13.84107 -13.68144 -13.39434 -13.16505 -13.01091 -12.89375 -12.72065 -12.62320 -12.44586 -12.22300 -12.10010 -11.90690 -11.67018 -11.62013 -11.08744 -11.02316 -10.99812 -10.81686 -10.66510 -9.20893 -9.03805 -8.94818 -8.24427 -5.67041 -0.58161 -0.04896 0.21177 0.80207 1.02682 1.23322 1.32744 1.42956 1.54161 1.68391 2.37455 2.75914 2.91822 3.14447 3.24828 3.53556 3.73434 3.88180 4.09686 4.12537 4.21540 4.24943 4.34730 4.35144 4.38663 4.43404 4.51271 4.74464 4.75049 4.78236 4.84756 4.94250 5.04279 5.09878 5.23744 5.24645 5.28357 5.35251 5.45150 5.54446 5.60945 5.85273 5.91243 6.15016 6.55904 6.70902 6.89657 7.49793 7.89443 8.95230 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.003657 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.786937 B = 7654.761207 C = 7850.960395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 N -0.587 5.587 4 C -0.263 4.263 5 H 0.029 0.971 6 C -0.022 4.022 7 N -0.946 5.946 8 Si 0.929 3.071 9 H -0.257 1.257 10 H -0.304 1.304 11 H -0.231 1.231 12 C 0.128 3.872 13 C 0.481 3.519 14 O -0.514 6.514 15 N -0.522 5.522 16 C 0.094 3.906 17 C -0.159 4.159 18 C 0.319 3.681 19 N -0.518 5.518 20 C 0.077 3.923 21 C -0.086 4.086 22 C -0.094 4.094 23 C -0.104 4.104 24 C -0.079 4.079 25 C -0.237 4.237 26 S 0.105 5.895 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.265 0.735 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.145 0.855 41 H 0.173 0.827 42 H 0.170 0.830 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.249 -3.843 21.131 22.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.018 3.982 3 N -0.307 5.307 4 C -0.393 4.393 5 H 0.046 0.954 6 C -0.219 4.219 7 N -0.588 5.588 8 Si 0.754 3.246 9 H -0.184 1.184 10 H -0.233 1.233 11 H -0.153 1.153 12 C -0.002 4.002 13 C 0.268 3.732 14 O -0.386 6.386 15 N -0.253 5.253 16 C -0.028 4.028 17 C -0.217 4.217 18 C -0.054 4.054 19 N -0.242 5.242 20 C -0.043 4.043 21 C -0.108 4.108 22 C -0.115 4.115 23 C -0.125 4.125 24 C -0.102 4.102 25 C -0.355 4.355 26 S 0.358 5.642 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.143 0.857 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.163 0.837 41 H 0.190 0.810 42 H 0.188 0.812 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.098 -4.368 19.912 21.278 hybrid contribution 0.101 1.006 0.050 1.012 sum 6.199 -3.362 19.962 21.171 Atomic orbital electron populations 1.22179 0.96448 1.01632 1.01365 1.21036 0.93764 0.83543 0.99844 1.43949 1.73627 1.12851 1.00254 1.18539 1.36236 0.93612 0.90870 0.95368 1.26226 0.99430 0.97150 0.99092 1.70055 1.42219 1.07343 1.39210 0.86068 0.81087 0.78667 0.78763 1.18369 1.23261 1.15320 1.21658 0.88955 0.99236 0.90391 1.24088 0.93815 0.77639 0.77702 1.90552 1.57684 1.38337 1.52051 1.46068 1.06702 1.49144 1.23380 1.22158 0.92790 0.93831 0.94016 1.22114 1.00498 1.00499 0.98560 1.24015 0.91654 0.96775 0.92964 1.66223 1.12070 1.27899 1.17978 1.19262 0.88135 0.99167 0.97742 1.20944 0.93789 1.00633 0.95394 1.21396 0.93660 0.96445 0.99983 1.21555 1.01142 0.97176 0.92605 1.20651 0.89674 0.99932 0.99954 1.24537 1.01937 1.07858 1.01194 1.86345 1.01604 1.52789 1.23482 0.94425 0.90643 0.92469 0.94345 0.92308 0.92628 0.85654 0.90229 0.88346 0.88388 0.87659 0.91716 0.93025 0.83689 0.80998 0.81244 0.84432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.97 10.24 71.98 0.74 -4.24 16 2 C 0.14 5.44 6.39 86.38 0.55 5.99 16 3 N -0.59 -26.92 1.56 -706.34 -1.10 -28.02 16 4 C -0.26 -14.95 9.90 84.04 0.83 -14.12 16 5 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 6 C -0.02 -1.26 5.29 84.86 0.45 -0.81 16 7 N -0.95 -59.05 13.97 21.65 0.30 -58.75 16 8 Si 0.93 41.20 25.10 68.60 1.72 42.92 16 9 H -0.26 -10.19 6.68 99.48 0.66 -9.53 16 10 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 11 H -0.23 -9.09 7.11 99.48 0.71 -8.39 16 12 C 0.13 4.99 3.55 85.63 0.30 5.29 16 13 C 0.48 19.82 7.70 87.66 0.68 20.49 16 14 O -0.51 -24.94 13.87 -2.99 -0.04 -24.99 16 15 N -0.52 -18.52 2.66 -640.32 -1.70 -20.22 16 16 C 0.09 2.48 5.76 86.38 0.50 2.98 16 17 C -0.16 -3.18 10.24 71.98 0.74 -2.45 16 18 C 0.32 11.84 7.82 179.60 1.40 13.25 16 19 N -0.52 -17.75 9.79 -188.86 -1.85 -19.60 16 20 C 0.08 2.38 6.94 39.79 0.28 2.65 16 21 C -0.09 -1.94 10.10 22.73 0.23 -1.71 16 22 C -0.09 -1.49 9.99 22.14 0.22 -1.27 16 23 C -0.10 -1.70 10.05 22.26 0.22 -1.47 16 24 C -0.08 -1.87 10.06 22.39 0.23 -1.65 16 25 C -0.24 -7.43 6.52 22.90 0.15 -7.28 16 26 S 0.11 3.98 20.41 -56.49 -1.15 2.83 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.04 1.58 8.04 -2.39 -0.02 1.56 16 31 H 0.06 2.00 8.07 -2.38 -0.02 1.98 16 32 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.13 3.70 7.13 -2.39 -0.02 3.68 16 34 H 0.08 3.26 2.62 -2.39 -0.01 3.25 16 35 H 0.10 2.52 7.60 -2.39 -0.02 2.50 16 36 H 0.10 2.44 6.43 -2.39 -0.02 2.42 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 1.25 7.23 -2.38 -0.02 1.23 16 39 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 41 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 42 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -77.26 365.22 4.67 -72.59 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.98 Total: 17.56 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 7.51 Total: 15.67 kcal Atomic # 7 Polarization: -122.24 SS G_CDS: -4.35 Total: -126.59 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.04 Total: -24.99 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.72 Total: 42.92 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.15 Total: 2.83 kcal Total: -77.26 4.67 -72.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121002379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.379 kcal (2) G-P(sol) polarization free energy of solvation -77.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds