Wall clock time and date at job start Tue Mar 31 2020 18:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46906 * 2 1 4 4 C 1.46500 * 119.99842 * 263.47973 * 3 2 1 5 5 C 1.50695 * 109.47215 * 270.00312 * 4 3 2 6 6 H 1.08008 * 120.00112 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00529 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00333 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99600 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47033 * 90.00299 * 9 7 5 11 11 H 1.48498 * 109.47337 * 210.00542 * 9 7 5 12 12 H 1.48503 * 109.46862 * 330.00443 * 9 7 5 13 13 C 1.34771 * 120.00316 * 83.48065 * 3 2 1 14 14 O 1.21597 * 120.00358 * 184.06508 * 13 3 2 15 15 C 1.47465 * 119.99788 * 4.06597 * 13 3 2 16 16 N 1.32021 * 126.44566 * 354.02016 * 15 13 3 17 17 N 1.28460 * 110.21512 * 180.02562 * 16 15 13 18 18 C 1.40136 * 124.93482 * 179.97438 * 17 16 15 19 19 C 1.38830 * 120.08339 * 179.74741 * 18 17 16 20 20 C 1.38122 * 119.95527 * 179.72418 * 19 18 17 21 21 C 1.38298 * 120.11740 * 0.57774 * 20 19 18 22 22 C 1.38249 * 120.15814 * 359.69712 * 21 20 19 23 23 C 1.38338 * 120.04340 * 0.02562 * 22 21 20 24 24 F 1.35098 * 120.05687 * 179.97438 * 23 22 21 25 25 C 1.36101 * 110.13507 * 0.02562 * 17 16 15 26 26 C 1.35771 * 107.06181 * 0.25763 * 25 17 16 27 27 O 1.36076 * 127.25887 * 179.74063 * 26 25 17 28 28 H 1.09001 * 109.47184 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47295 * 299.99823 * 1 2 3 30 30 H 1.09004 * 109.47432 * 59.99865 * 1 2 3 31 31 H 1.08998 * 109.46889 * 240.00281 * 2 1 3 32 32 H 1.08997 * 109.47220 * 119.99490 * 2 1 3 33 33 H 1.09004 * 109.47305 * 30.00077 * 4 3 2 34 34 H 1.09001 * 109.47464 * 150.00255 * 4 3 2 35 35 H 0.97003 * 119.99803 * 179.97438 * 8 7 5 36 36 H 1.07998 * 120.01934 * 0.02562 * 19 18 17 37 37 H 1.08000 * 119.94043 * 180.29793 * 20 19 18 38 38 H 1.07999 * 119.91955 * 179.71761 * 21 20 19 39 39 H 1.07995 * 119.97494 * 180.02562 * 22 21 20 40 40 H 1.07996 * 126.46791 * 179.97438 * 25 17 16 41 41 H 0.96697 * 114.00017 * 90.02956 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3982 2.0238 -1.2605 5 6 3.8594 1.7736 -1.5315 6 1 4.4464 1.1943 -0.8342 7 6 4.4472 2.2852 -2.6690 8 7 5.7224 2.0672 -2.9051 9 14 3.4320 3.2878 -3.8747 10 1 3.4918 4.7231 -3.4983 11 1 3.9757 3.1124 -5.2453 12 1 2.0214 2.8250 -3.8387 13 6 2.1180 2.0608 1.1596 14 8 2.4524 3.2299 1.1524 15 6 1.8214 1.3866 2.4371 16 7 1.3448 0.1645 2.5868 17 7 1.2041 -0.1073 3.8344 18 6 0.7201 -1.3206 4.3418 19 6 0.6140 -1.5086 5.7132 20 6 0.1313 -2.7034 6.2102 21 6 -0.2354 -3.7176 5.3444 22 6 -0.1264 -3.5377 3.9780 23 6 0.3509 -2.3415 3.4729 24 9 0.4580 -2.1656 2.1377 25 6 1.5923 0.9547 4.5920 26 6 1.9876 1.9315 3.7358 27 8 2.4493 3.1707 4.0564 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.8019 1.6098 -2.0737 34 1 2.2205 3.0969 -1.1895 35 1 6.1358 2.4268 -3.7056 36 1 0.9042 -0.7193 6.3908 37 1 0.0443 -2.8476 7.2770 38 1 -0.6082 -4.6523 5.7367 39 1 -0.4140 -4.3315 3.3046 40 1 1.5829 1.0115 5.6704 41 1 3.4082 3.2155 4.1720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121569163.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:40 Heat of formation + Delta-G solvation = 19.503863 kcal Electronic energy + Delta-G solvation = -28976.355877 eV Core-core repulsion = 24774.599067 eV Total energy + Delta-G solvation = -4201.756810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.05682 -42.94108 -39.51058 -38.66390 -37.17669 -35.22779 -33.71434 -32.59386 -31.31915 -30.43874 -29.92860 -29.41333 -27.60133 -24.72919 -23.77158 -22.79307 -22.55407 -21.35687 -21.19426 -19.24405 -18.42448 -17.74629 -17.24828 -16.88125 -16.65702 -16.36445 -16.22189 -15.57533 -15.39213 -15.19748 -14.80626 -14.32672 -14.24027 -13.99988 -13.84722 -13.60247 -13.29818 -13.10412 -12.74237 -12.49204 -12.37716 -12.08811 -11.87908 -11.66936 -11.50409 -11.34269 -10.86855 -10.65614 -10.41162 -10.31793 -10.12508 -9.96183 -9.49750 -9.39067 -9.18683 -9.11338 -8.53209 -8.38828 -7.60189 -6.03359 -4.01802 0.24667 0.61157 1.84200 1.95011 2.07290 3.08717 3.34765 3.40558 3.43132 3.63550 3.71577 3.96266 4.00147 4.24456 4.36700 4.45380 4.56295 4.61128 4.68484 4.88201 4.98815 5.16658 5.30620 5.41439 5.49072 5.56980 5.60279 5.65956 5.80119 5.88682 6.00174 6.05330 6.15593 6.34960 6.45280 6.62058 6.74181 6.88265 7.02404 7.44740 7.66485 7.70959 7.76831 8.32303 8.52433 8.96539 9.02925 9.57075 11.10010 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.003558 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.232297 B = 7867.470767 C = 8864.681258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.103 3.897 3 N -0.575 5.575 4 C 0.215 3.785 5 C -0.528 4.528 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.265 1.265 13 C 0.588 3.412 14 O -0.524 6.524 15 C -0.002 4.002 16 N -0.232 5.232 17 N -0.241 5.241 18 C 0.111 3.889 19 C -0.104 4.104 20 C -0.108 4.108 21 C -0.094 4.094 22 C -0.136 4.136 23 C 0.113 3.887 24 F -0.107 7.107 25 C -0.049 4.049 26 C 0.059 3.941 27 O -0.451 6.451 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.264 0.736 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.188 0.812 41 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.484 -13.389 20.994 28.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 N -0.306 5.306 4 C 0.095 3.905 5 C -0.566 4.566 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.372 3.628 14 O -0.399 6.399 15 C -0.165 4.165 16 N -0.065 5.065 17 N -0.024 5.024 18 C 0.019 3.981 19 C -0.125 4.125 20 C -0.127 4.127 21 C -0.113 4.113 22 C -0.155 4.155 23 C 0.091 3.909 24 F -0.085 7.085 25 C -0.188 4.188 26 C 0.004 3.996 27 O -0.257 6.257 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.205 0.795 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -14.078 -13.463 20.151 28.027 hybrid contribution 0.452 1.067 -0.414 1.230 sum -13.627 -12.396 19.737 26.998 Atomic orbital electron populations 1.22053 0.96734 1.01215 1.01120 1.21736 0.93617 0.83060 1.03718 1.47833 1.61821 1.13687 1.07234 1.19728 0.96544 0.94181 0.80034 1.21336 0.92976 1.34557 1.07737 0.90734 1.24840 0.94830 0.95654 0.97619 1.69900 1.10809 1.45765 1.27224 0.86852 0.80913 0.81437 0.80547 1.19832 1.21099 1.18974 1.16723 0.78872 0.85749 0.81426 1.90793 1.47940 1.15232 1.85889 1.23117 1.05511 0.91278 0.96578 1.74266 1.18307 1.16082 0.97817 1.42316 1.45654 1.10127 1.04254 1.17731 1.03494 0.83760 0.93144 1.20821 1.00792 0.99527 0.91317 1.21050 0.98684 0.92198 1.00769 1.21154 0.98397 0.99670 0.92091 1.21194 1.01359 0.96011 0.96948 1.17385 1.01552 0.93746 0.78214 1.91650 1.93143 1.95405 1.28269 1.22808 1.08955 0.88016 0.99001 1.18098 1.04961 0.87100 0.89472 1.84878 1.27746 1.22540 1.90545 0.92227 0.93244 0.93254 0.90359 0.88892 0.94943 0.94320 0.92601 0.83941 0.84138 0.84249 0.83500 0.79497 0.75363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.35 37.16 0.35 -2.18 16 2 C 0.10 1.98 5.71 -4.04 -0.02 1.96 16 3 N -0.58 -13.36 2.47 -176.32 -0.44 -13.80 16 4 C 0.22 5.61 4.23 -5.20 -0.02 5.59 16 5 C -0.53 -15.74 9.94 -34.44 -0.34 -16.09 16 6 H 0.07 2.43 8.06 -52.48 -0.42 2.01 16 7 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 8 N -0.90 -28.27 13.96 55.43 0.77 -27.49 16 9 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 10 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 13 C 0.59 13.79 7.62 -12.50 -0.10 13.69 16 14 O -0.52 -13.92 16.10 3.40 0.05 -13.86 16 15 C 0.00 -0.04 6.65 -82.66 -0.55 -0.59 16 16 N -0.23 -3.90 5.47 33.46 0.18 -3.72 16 17 N -0.24 -3.28 3.52 -10.35 -0.04 -3.31 16 18 C 0.11 1.19 6.67 -83.54 -0.56 0.63 16 19 C -0.10 -0.72 9.43 -39.41 -0.37 -1.09 16 20 C -0.11 -0.52 10.04 -39.60 -0.40 -0.92 16 21 C -0.09 -0.47 10.04 -39.56 -0.40 -0.86 16 22 C -0.14 -0.97 10.02 -39.54 -0.40 -1.36 16 23 C 0.11 1.20 7.27 -39.24 -0.29 0.91 16 24 F -0.11 -1.42 14.15 2.25 0.03 -1.38 16 25 C -0.05 -0.60 10.81 -16.54 -0.18 -0.78 16 26 C 0.06 0.96 7.35 -39.10 -0.29 0.67 16 27 O -0.45 -7.03 13.21 -21.86 -0.29 -7.32 16 28 H 0.06 0.85 7.73 -51.93 -0.40 0.45 16 29 H 0.05 0.85 7.07 -51.93 -0.37 0.48 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.52 8.02 -51.93 -0.42 1.10 16 32 H 0.09 1.77 4.78 -51.93 -0.25 1.52 16 33 H 0.03 0.80 7.13 -51.93 -0.37 0.43 16 34 H 0.04 1.06 6.80 -51.93 -0.35 0.71 16 35 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 36 H 0.14 0.66 6.65 -52.49 -0.35 0.31 16 37 H 0.14 0.28 8.06 -52.49 -0.42 -0.14 16 38 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 39 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.19 1.42 6.96 -52.49 -0.37 1.05 16 41 H 0.39 4.46 9.07 45.56 0.41 4.87 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -38.28 350.57 -6.50 -44.77 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -3.74 Total: 1.64 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -3.65 Total: 1.67 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.48 Total: -48.32 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.23 Total: -21.19 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.03 Total: -1.38 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.28 -6.50 -44.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121569163.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.277 kcal (2) G-P(sol) polarization free energy of solvation -38.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds