Wall clock time and date at job start Tue Mar 31 2020 18:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46906 * 2 1 4 4 C 1.46500 * 119.99842 * 263.47973 * 3 2 1 5 5 C 1.50695 * 109.47215 * 270.00312 * 4 3 2 6 6 H 1.08008 * 120.00112 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00529 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00333 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99600 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47033 * 90.00299 * 9 7 5 11 11 H 1.48498 * 109.47337 * 210.00542 * 9 7 5 12 12 H 1.48503 * 109.46862 * 330.00443 * 9 7 5 13 13 C 1.34771 * 120.00316 * 83.48065 * 3 2 1 14 14 O 1.21597 * 120.00358 * 184.06508 * 13 3 2 15 15 C 1.47465 * 119.99788 * 4.06597 * 13 3 2 16 16 N 1.32021 * 126.44566 * 354.02016 * 15 13 3 17 17 N 1.28460 * 110.21512 * 180.02562 * 16 15 13 18 18 C 1.40136 * 124.93482 * 179.97438 * 17 16 15 19 19 C 1.38830 * 120.08339 * 179.74741 * 18 17 16 20 20 C 1.38122 * 119.95527 * 179.72418 * 19 18 17 21 21 C 1.38298 * 120.11740 * 0.57774 * 20 19 18 22 22 C 1.38249 * 120.15814 * 359.69712 * 21 20 19 23 23 C 1.38338 * 120.04340 * 0.02562 * 22 21 20 24 24 F 1.35098 * 120.05687 * 179.97438 * 23 22 21 25 25 C 1.36101 * 110.13507 * 0.02562 * 17 16 15 26 26 C 1.35771 * 107.06181 * 0.25763 * 25 17 16 27 27 O 1.36076 * 127.25887 * 179.74063 * 26 25 17 28 28 H 1.09001 * 109.47184 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47295 * 299.99823 * 1 2 3 30 30 H 1.09004 * 109.47432 * 59.99865 * 1 2 3 31 31 H 1.08998 * 109.46889 * 240.00281 * 2 1 3 32 32 H 1.08997 * 109.47220 * 119.99490 * 2 1 3 33 33 H 1.09004 * 109.47305 * 30.00077 * 4 3 2 34 34 H 1.09001 * 109.47464 * 150.00255 * 4 3 2 35 35 H 0.97003 * 119.99803 * 179.97438 * 8 7 5 36 36 H 1.07998 * 120.01934 * 0.02562 * 19 18 17 37 37 H 1.08000 * 119.94043 * 180.29793 * 20 19 18 38 38 H 1.07999 * 119.91955 * 179.71761 * 21 20 19 39 39 H 1.07995 * 119.97494 * 180.02562 * 22 21 20 40 40 H 1.07996 * 126.46791 * 179.97438 * 25 17 16 41 41 H 0.96697 * 114.00017 * 90.02956 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3982 2.0238 -1.2605 5 6 3.8594 1.7736 -1.5315 6 1 4.4464 1.1943 -0.8342 7 6 4.4472 2.2852 -2.6690 8 7 5.7224 2.0672 -2.9051 9 14 3.4320 3.2878 -3.8747 10 1 3.4918 4.7231 -3.4983 11 1 3.9757 3.1124 -5.2453 12 1 2.0214 2.8250 -3.8387 13 6 2.1180 2.0608 1.1596 14 8 2.4524 3.2299 1.1524 15 6 1.8214 1.3866 2.4371 16 7 1.3448 0.1645 2.5868 17 7 1.2041 -0.1073 3.8344 18 6 0.7201 -1.3206 4.3418 19 6 0.6140 -1.5086 5.7132 20 6 0.1313 -2.7034 6.2102 21 6 -0.2354 -3.7176 5.3444 22 6 -0.1264 -3.5377 3.9780 23 6 0.3509 -2.3415 3.4729 24 9 0.4580 -2.1656 2.1377 25 6 1.5923 0.9547 4.5920 26 6 1.9876 1.9315 3.7358 27 8 2.4493 3.1707 4.0564 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.8019 1.6098 -2.0737 34 1 2.2205 3.0969 -1.1895 35 1 6.1358 2.4268 -3.7056 36 1 0.9042 -0.7193 6.3908 37 1 0.0443 -2.8476 7.2770 38 1 -0.6082 -4.6523 5.7367 39 1 -0.4140 -4.3315 3.3046 40 1 1.5829 1.0115 5.6704 41 1 3.4082 3.2155 4.1720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121569163.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:40 Heat of formation + Delta-G solvation = -8.548075 kcal Electronic energy + Delta-G solvation = -28977.572300 eV Core-core repulsion = 24774.599067 eV Total energy + Delta-G solvation = -4202.973233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.87732 -44.06449 -40.68458 -39.85119 -38.32976 -37.03309 -35.04097 -34.43226 -32.08170 -31.94443 -31.08272 -30.46041 -29.38832 -26.10801 -24.61223 -24.40555 -23.88463 -22.49022 -22.24121 -20.52220 -19.66913 -19.14219 -18.62312 -18.10324 -18.05332 -17.47548 -17.27889 -16.96161 -16.54158 -16.26185 -15.84506 -15.74358 -15.56118 -15.33513 -14.93906 -14.88438 -14.83108 -14.45626 -14.12457 -13.87204 -13.45602 -13.37155 -13.24866 -12.94453 -12.89509 -12.63910 -12.47235 -12.25174 -12.08750 -11.90637 -11.77573 -11.46716 -11.22376 -10.93520 -10.85181 -10.20656 -9.94206 -9.56427 -9.23791 -8.36784 -6.42753 -0.47889 0.10413 0.55346 0.99876 1.11905 1.31306 1.35775 1.44736 2.09233 2.29017 2.30208 2.56578 2.85363 2.96948 3.09248 3.48249 3.59363 3.71487 3.79130 4.03929 4.13313 4.22038 4.26958 4.39332 4.41307 4.50065 4.60289 4.72215 4.78035 4.85076 4.89821 4.93722 5.02143 5.07931 5.19910 5.28965 5.35547 5.40899 5.54325 5.62229 5.89218 6.19550 6.47756 6.56996 6.63398 6.70470 7.13269 7.27301 8.80298 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.003558 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.232297 B = 7867.470767 C = 8864.681258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.103 3.897 3 N -0.585 5.585 4 C 0.226 3.774 5 C -0.540 4.540 6 H 0.026 0.974 7 C 0.015 3.985 8 N -0.942 5.942 9 Si 0.949 3.051 10 H -0.273 1.273 11 H -0.270 1.270 12 H -0.241 1.241 13 C 0.581 3.419 14 O -0.572 6.572 15 C -0.051 4.051 16 N -0.238 5.238 17 N -0.228 5.228 18 C 0.066 3.934 19 C -0.094 4.094 20 C -0.097 4.097 21 C -0.076 4.076 22 C -0.140 4.140 23 C 0.079 3.921 24 F -0.133 7.133 25 C -0.015 4.015 26 C 0.032 3.968 27 O -0.465 6.465 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.024 0.976 35 H 0.270 0.730 36 H 0.170 0.830 37 H 0.182 0.818 38 H 0.177 0.823 39 H 0.160 0.840 40 H 0.243 0.757 41 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.159 -15.513 23.889 32.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 N -0.315 5.315 4 C 0.104 3.896 5 C -0.578 4.578 6 H 0.044 0.956 7 C -0.183 4.183 8 N -0.582 5.582 9 Si 0.771 3.229 10 H -0.198 1.198 11 H -0.195 1.195 12 H -0.164 1.164 13 C 0.368 3.632 14 O -0.451 6.451 15 C -0.210 4.210 16 N -0.074 5.074 17 N -0.011 5.011 18 C -0.025 4.025 19 C -0.114 4.114 20 C -0.115 4.115 21 C -0.094 4.094 22 C -0.159 4.159 23 C 0.058 3.942 24 F -0.112 7.112 25 C -0.155 4.155 26 C -0.023 4.023 27 O -0.272 6.272 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.188 0.812 37 H 0.199 0.801 38 H 0.194 0.806 39 H 0.178 0.822 40 H 0.259 0.741 41 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -16.773 -15.648 23.059 32.525 hybrid contribution 1.282 1.430 -1.030 2.179 sum -15.490 -14.218 22.029 30.453 Atomic orbital electron populations 1.21897 0.94251 1.02653 1.00645 1.21886 0.95535 0.81041 1.03520 1.47931 1.62026 1.14994 1.06562 1.19419 0.94317 0.93739 0.82144 1.21480 0.94785 1.34335 1.07209 0.95585 1.25830 0.96123 0.96685 0.99700 1.70042 1.12848 1.47014 1.28318 0.85701 0.80237 0.79080 0.77893 1.19792 1.19480 1.16438 1.17311 0.77655 0.85469 0.82788 1.90723 1.50157 1.17251 1.86950 1.22577 1.09658 0.93061 0.95722 1.74109 1.18382 1.14874 0.99992 1.42683 1.43680 1.11348 1.03411 1.18263 1.06548 0.82812 0.94848 1.21275 0.99336 1.01095 0.89664 1.21593 0.96374 0.90808 1.02758 1.21691 0.95834 1.01023 0.90900 1.21488 1.00903 0.95011 0.98542 1.17946 1.03467 0.95451 0.77359 1.91569 1.93633 1.95709 1.30243 1.23424 1.05671 0.85816 1.00625 1.18334 1.06766 0.88159 0.89045 1.84826 1.29068 1.22965 1.90371 0.89734 0.94061 0.93198 0.91005 0.88658 0.93086 0.95812 0.92059 0.81248 0.80118 0.80593 0.82204 0.74130 0.73949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 9.35 71.98 0.67 -3.90 16 2 C 0.10 4.16 5.71 86.38 0.49 4.65 16 3 N -0.59 -28.79 2.47 -830.01 -2.05 -30.84 16 4 C 0.23 12.24 4.23 85.63 0.36 12.60 16 5 C -0.54 -34.04 9.94 25.60 0.25 -33.78 16 6 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 7 C 0.01 0.92 5.47 84.65 0.46 1.39 16 8 N -0.94 -61.54 13.96 21.45 0.30 -61.24 16 9 Si 0.95 46.55 27.47 68.60 1.88 48.44 16 10 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.24 -10.82 6.54 99.48 0.65 -10.17 16 13 C 0.58 29.13 7.62 86.68 0.66 29.79 16 14 O -0.57 -32.64 16.10 -2.22 -0.04 -32.68 16 15 C -0.05 -2.05 6.65 42.43 0.28 -1.77 16 16 N -0.24 -8.23 5.47 -48.05 -0.26 -8.49 16 17 N -0.23 -5.97 3.52 -186.67 -0.66 -6.63 16 18 C 0.07 1.27 6.67 38.15 0.25 1.52 16 19 C -0.09 -0.86 9.43 22.38 0.21 -0.64 16 20 C -0.10 -0.36 10.04 22.26 0.22 -0.14 16 21 C -0.08 -0.36 10.04 22.29 0.22 -0.13 16 22 C -0.14 -1.60 10.02 22.30 0.22 -1.38 16 23 C 0.08 1.59 7.27 22.49 0.16 1.75 16 24 F -0.13 -3.59 14.15 44.97 0.64 -2.95 16 25 C -0.02 -0.35 10.81 83.46 0.90 0.55 16 26 C 0.03 1.06 7.35 22.58 0.17 1.23 16 27 O -0.46 -14.94 13.21 -92.61 -1.22 -16.17 16 28 H 0.08 2.38 7.73 -2.39 -0.02 2.36 16 29 H 0.04 1.45 7.07 -2.38 -0.02 1.43 16 30 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.07 2.93 8.02 -2.39 -0.02 2.91 16 32 H 0.10 3.84 4.78 -2.39 -0.01 3.83 16 33 H 0.05 2.55 7.13 -2.38 -0.02 2.53 16 34 H 0.02 1.36 6.80 -2.39 -0.02 1.34 16 35 H 0.27 16.28 8.31 -92.71 -0.77 15.51 16 36 H 0.17 0.55 6.65 -2.91 -0.02 0.53 16 37 H 0.18 -0.66 8.06 -2.91 -0.02 -0.68 16 38 H 0.18 -0.40 8.06 -2.91 -0.02 -0.42 16 39 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.24 2.49 6.96 -2.91 -0.02 2.47 16 41 H 0.40 9.75 9.07 -74.06 -0.67 9.08 16 Total: -1.00 -92.33 350.57 4.51 -87.82 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.37 Total: 11.01 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 5.56 Total: 11.74 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -2.67 Total: -107.20 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -1.26 Total: -48.85 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.64 Total: -2.95 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.88 Total: 48.44 kcal Total: -92.33 4.51 -87.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121569163.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.267 kcal (2) G-P(sol) polarization free energy of solvation -92.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds