Wall clock time and date at job start Tue Mar 31 2020 19:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47129 * 2 1 4 4 C 1.37098 * 120.00083 * 264.76626 * 3 2 1 5 5 H 1.08002 * 119.99667 * 138.85208 * 4 3 2 6 6 C 1.38951 * 120.00086 * 318.86006 * 4 3 2 7 7 N 1.31414 * 119.99667 * 341.82245 * 6 4 3 8 8 Si 1.86800 * 120.00094 * 161.82630 * 6 4 3 9 9 H 1.48501 * 109.47035 * 89.99524 * 8 6 4 10 10 H 1.48497 * 109.47060 * 209.99567 * 8 6 4 11 11 H 1.48501 * 109.46944 * 329.99597 * 8 6 4 12 12 C 1.34781 * 120.00184 * 84.77047 * 3 2 1 13 13 O 1.21290 * 120.00242 * 179.97438 * 12 3 2 14 14 C 1.50704 * 119.99527 * 359.97438 * 12 3 2 15 15 S 1.81407 * 109.46777 * 180.02562 * 14 12 3 16 16 C 1.81402 * 102.99856 * 180.02562 * 15 14 12 17 17 C 1.50695 * 109.47130 * 179.97438 * 16 15 14 18 18 C 1.35105 * 125.68571 * 270.01874 * 17 16 15 19 19 N 1.36841 * 107.17823 * 179.97438 * 18 17 16 20 20 C 1.36477 * 132.56783 * 179.97438 * 19 18 17 21 21 C 1.34956 * 120.61366 * 180.27453 * 20 19 18 22 22 C 1.50695 * 119.85428 * 179.72448 * 21 20 19 23 23 C 1.40480 * 120.29139 * 359.41958 * 21 20 19 24 24 C 1.36023 * 119.69410 * 0.59031 * 23 21 20 25 25 C 1.37080 * 107.00196 * 359.97438 * 19 18 17 26 26 N 1.32565 * 108.03339 * 359.97438 * 25 19 18 27 27 H 1.08991 * 109.47582 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46867 * 300.00661 * 1 2 3 29 29 H 1.09004 * 109.46920 * 59.99987 * 1 2 3 30 30 H 1.08994 * 109.46907 * 240.00118 * 2 1 3 31 31 H 1.09004 * 109.46920 * 120.00013 * 2 1 3 32 32 H 0.96999 * 119.99313 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47129 * 60.00257 * 14 12 3 34 34 H 1.08997 * 109.47009 * 299.99519 * 14 12 3 35 35 H 1.08995 * 109.47069 * 59.99358 * 16 15 14 36 36 H 1.09008 * 109.46978 * 299.99757 * 16 15 14 37 37 H 1.08000 * 126.40969 * 359.95516 * 18 17 16 38 38 H 1.08007 * 119.69817 * 359.97438 * 20 19 18 39 39 H 1.08993 * 109.47125 * 89.99915 * 22 21 20 40 40 H 1.09006 * 109.47175 * 210.00008 * 22 21 20 41 41 H 1.09002 * 109.47098 * 330.00166 * 22 21 20 42 42 H 1.08004 * 120.15040 * 180.27934 * 23 21 20 43 43 H 1.07997 * 120.33182 * 179.67951 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3490 1.9914 -1.1823 5 1 2.0743 3.0219 -1.3534 6 6 3.0371 1.2842 -2.1605 7 7 3.6791 0.1817 -1.8451 8 14 3.0499 1.9004 -3.9239 9 1 4.2055 2.8119 -4.1214 10 1 3.1659 0.7461 -4.8508 11 1 1.7884 2.6332 -4.2013 12 6 2.1427 2.0521 1.1624 13 8 2.5474 3.1955 1.1624 14 6 1.7788 1.3815 2.4620 15 16 2.0527 2.5350 3.8350 16 6 1.5680 1.5626 5.2877 17 6 1.7422 2.3961 6.5310 18 6 2.8637 2.4681 7.2809 19 7 2.6060 3.3303 8.3117 20 6 3.3638 3.7720 9.3574 21 6 2.8542 4.6386 10.2577 22 6 3.7042 5.1103 11.4092 23 6 1.5371 5.1080 10.1225 24 6 0.7708 4.6756 9.0852 25 6 1.3154 3.7657 8.1570 26 7 0.8146 3.1883 7.0739 27 1 -0.3634 -1.0275 -0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.1598 -0.3118 -2.5279 33 1 2.4002 0.4968 2.6008 34 1 0.7293 1.0883 2.4381 35 1 2.1952 0.6738 5.3557 36 1 0.5239 1.2641 5.1932 37 1 3.7901 1.9430 7.1007 38 1 4.3792 3.4209 9.4682 39 1 4.2432 6.0117 11.1176 40 1 3.0665 5.3293 12.2657 41 1 4.4177 4.3311 11.6772 42 1 1.1331 5.8050 10.8418 43 1 -0.2448 5.0257 8.9743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127953806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:50 Heat of formation + Delta-G solvation = 59.204843 kcal Electronic energy + Delta-G solvation = -24656.577489 eV Core-core repulsion = 21022.755419 eV Total energy + Delta-G solvation = -3633.822070 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.96455 -38.46009 -38.14876 -34.95565 -33.94454 -32.90583 -32.14792 -30.46415 -29.47828 -29.13988 -28.05015 -26.18534 -24.64451 -23.50500 -22.31506 -22.28510 -20.76123 -19.12124 -17.97213 -16.97147 -16.79620 -16.28700 -15.93616 -15.75901 -15.39816 -15.07707 -14.90705 -14.39698 -14.22637 -14.16494 -13.87794 -13.59596 -13.21152 -12.93582 -12.90847 -12.78479 -12.53790 -12.40020 -12.12631 -11.88514 -11.77168 -11.39629 -11.26868 -11.17102 -11.06421 -10.97080 -10.40218 -10.34362 -10.18909 -10.12624 -9.55400 -8.91538 -8.67166 -8.46905 -8.02332 -7.43969 -7.14588 -6.32275 -4.00340 0.47144 1.02671 1.75261 2.39824 2.80875 3.06544 3.19038 3.27092 3.32642 3.39294 3.88592 3.93965 4.11685 4.17401 4.36353 4.46515 4.67915 4.85195 4.87179 5.01425 5.02195 5.11584 5.12490 5.16795 5.41854 5.49794 5.57992 5.59900 5.63676 5.66247 5.76400 5.81508 5.91481 5.99127 6.19716 6.25293 6.31647 6.43253 6.48731 6.85810 6.87650 7.19524 7.59130 7.75330 8.28616 8.50454 9.18477 9.37377 9.99574 10.73116 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.028831 B = 0.002046 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.940005 B =13682.068433 C =13997.930733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 N -0.437 5.437 4 C -0.306 4.306 5 H 0.089 0.911 6 C 0.038 3.962 7 N -0.872 5.872 8 Si 0.920 3.080 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.478 3.522 13 O -0.560 6.560 14 C -0.117 4.117 15 S -0.168 6.168 16 C -0.035 4.035 17 C 0.085 3.915 18 C -0.077 4.077 19 N -0.360 5.360 20 C 0.053 3.947 21 C -0.113 4.113 22 C -0.103 4.103 23 C -0.103 4.103 24 C -0.072 4.072 25 C 0.219 3.781 26 N -0.476 5.476 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.267 0.733 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.186 0.814 38 H 0.161 0.839 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.141 0.859 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 1.150 24.831 24.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.022 4.022 3 N -0.158 5.158 4 C -0.434 4.434 5 H 0.106 0.894 6 C -0.166 4.166 7 N -0.510 5.510 8 Si 0.746 3.254 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.193 1.193 12 C 0.264 3.736 13 O -0.442 6.442 14 C -0.269 4.269 15 S 0.059 5.941 16 C -0.184 4.184 17 C -0.048 4.048 18 C -0.210 4.210 19 N -0.031 5.031 20 C -0.069 4.069 21 C -0.116 4.116 22 C -0.160 4.160 23 C -0.127 4.127 24 C -0.092 4.092 25 C -0.025 4.025 26 N -0.196 5.196 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.203 0.797 38 H 0.179 0.821 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.159 0.841 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.302 2.647 24.286 24.538 hybrid contribution 0.463 -1.484 -0.606 1.668 sum -1.839 1.163 23.680 23.780 Atomic orbital electron populations 1.22235 0.98124 1.00416 1.01676 1.21481 0.91684 0.85526 1.03476 1.43368 1.56270 1.11778 1.04370 1.19379 1.34896 0.98660 0.90468 0.89355 1.25446 0.93978 0.96555 1.00661 1.69929 1.29427 1.17544 1.34051 0.86050 0.79048 0.78321 0.81983 1.20231 1.20836 1.19339 1.19541 0.82397 0.87943 0.83714 1.90566 1.49351 1.18227 1.86038 1.23711 1.05069 1.01485 0.96632 1.87723 1.87184 1.22178 0.96984 1.21669 1.05541 0.98720 0.92440 1.19867 0.90081 0.98630 0.96215 1.22420 1.02871 1.03334 0.92406 1.42735 1.12554 1.29638 1.18192 1.21400 0.97448 0.99726 0.88336 1.19456 0.95874 0.98525 0.97789 1.20665 0.98811 1.01722 0.94812 1.20946 0.93124 1.00333 0.98283 1.20272 1.01199 0.95482 0.92262 1.20956 0.82469 1.01640 0.97451 1.70633 1.30244 1.11933 1.06798 0.93006 0.93885 0.92233 0.87707 0.93465 0.92256 0.88523 0.88687 0.88762 0.88640 0.79683 0.82127 0.90646 0.90768 0.91240 0.84083 0.83079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 10.15 37.16 0.38 -2.58 16 2 C 0.10 2.20 5.41 -4.04 -0.02 2.18 16 3 N -0.44 -11.22 2.50 -114.81 -0.29 -11.51 16 4 C -0.31 -8.58 8.84 -14.93 -0.13 -8.71 16 5 H 0.09 2.60 7.82 -52.49 -0.41 2.19 16 6 C 0.04 1.01 4.95 -17.47 -0.09 0.93 16 7 N -0.87 -23.63 11.61 55.50 0.64 -22.98 16 8 Si 0.92 20.81 29.59 -169.99 -5.03 15.78 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 C 0.48 12.11 7.61 -10.98 -0.08 12.03 16 13 O -0.56 -16.42 15.78 5.55 0.09 -16.34 16 14 C -0.12 -2.28 5.03 36.01 0.18 -2.10 16 15 S -0.17 -3.21 20.86 -107.50 -2.24 -5.45 16 16 C -0.03 -0.50 6.47 36.00 0.23 -0.27 16 17 C 0.09 1.27 6.32 -82.98 -0.52 0.75 16 18 C -0.08 -0.97 11.66 -16.43 -0.19 -1.16 16 19 N -0.36 -4.31 2.94 -62.66 -0.18 -4.50 16 20 C 0.05 0.45 10.56 -16.65 -0.18 0.28 16 21 C -0.11 -0.80 5.85 -104.95 -0.61 -1.41 16 22 C -0.10 -0.39 10.00 36.00 0.36 -0.03 16 23 C -0.10 -0.76 9.74 -39.53 -0.38 -1.14 16 24 C -0.07 -0.72 10.11 -39.36 -0.40 -1.12 16 25 C 0.22 2.97 7.81 -156.04 -1.22 1.75 16 26 N -0.48 -7.67 11.32 -9.01 -0.10 -7.77 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.72 6.60 -51.93 -0.34 0.38 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.10 2.48 5.76 -51.93 -0.30 2.18 16 31 H 0.05 0.91 6.66 -51.93 -0.35 0.57 16 32 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.10 1.69 7.41 -51.93 -0.38 1.31 16 34 H 0.09 1.64 6.54 -51.93 -0.34 1.30 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.10 1.31 8.14 -51.92 -0.42 0.89 16 37 H 0.19 1.78 8.06 -52.49 -0.42 1.35 16 38 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 40 H 0.07 0.20 8.09 -51.93 -0.42 -0.22 16 41 H 0.07 0.20 8.07 -51.93 -0.42 -0.22 16 42 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 43 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -35.77 374.61 -10.05 -45.82 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.90 Total: 1.91 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.68 Total: -0.61 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.07 Total: -46.75 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.09 Total: -16.34 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.24 Total: -5.45 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.77 -10.05 -45.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127953806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.029 kcal (2) G-P(sol) polarization free energy of solvation -35.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds