Wall clock time and date at job start Tue Mar 31 2020 19:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47129 * 2 1 4 4 C 1.37098 * 120.00083 * 264.76626 * 3 2 1 5 5 H 1.08002 * 119.99667 * 138.85208 * 4 3 2 6 6 C 1.38951 * 120.00086 * 318.86006 * 4 3 2 7 7 N 1.31414 * 119.99667 * 341.82245 * 6 4 3 8 8 Si 1.86800 * 120.00094 * 161.82630 * 6 4 3 9 9 H 1.48501 * 109.47035 * 89.99524 * 8 6 4 10 10 H 1.48497 * 109.47060 * 209.99567 * 8 6 4 11 11 H 1.48501 * 109.46944 * 329.99597 * 8 6 4 12 12 C 1.34781 * 120.00184 * 84.77047 * 3 2 1 13 13 O 1.21290 * 120.00242 * 179.97438 * 12 3 2 14 14 C 1.50704 * 119.99527 * 359.97438 * 12 3 2 15 15 S 1.81407 * 109.46777 * 180.02562 * 14 12 3 16 16 C 1.81402 * 102.99856 * 180.02562 * 15 14 12 17 17 C 1.50695 * 109.47130 * 179.97438 * 16 15 14 18 18 C 1.35105 * 125.68571 * 270.01874 * 17 16 15 19 19 N 1.36841 * 107.17823 * 179.97438 * 18 17 16 20 20 C 1.36477 * 132.56783 * 179.97438 * 19 18 17 21 21 C 1.34956 * 120.61366 * 180.27453 * 20 19 18 22 22 C 1.50695 * 119.85428 * 179.72448 * 21 20 19 23 23 C 1.40480 * 120.29139 * 359.41958 * 21 20 19 24 24 C 1.36023 * 119.69410 * 0.59031 * 23 21 20 25 25 C 1.37080 * 107.00196 * 359.97438 * 19 18 17 26 26 N 1.32565 * 108.03339 * 359.97438 * 25 19 18 27 27 H 1.08991 * 109.47582 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46867 * 300.00661 * 1 2 3 29 29 H 1.09004 * 109.46920 * 59.99987 * 1 2 3 30 30 H 1.08994 * 109.46907 * 240.00118 * 2 1 3 31 31 H 1.09004 * 109.46920 * 120.00013 * 2 1 3 32 32 H 0.96999 * 119.99313 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47129 * 60.00257 * 14 12 3 34 34 H 1.08997 * 109.47009 * 299.99519 * 14 12 3 35 35 H 1.08995 * 109.47069 * 59.99358 * 16 15 14 36 36 H 1.09008 * 109.46978 * 299.99757 * 16 15 14 37 37 H 1.08000 * 126.40969 * 359.95516 * 18 17 16 38 38 H 1.08007 * 119.69817 * 359.97438 * 20 19 18 39 39 H 1.08993 * 109.47125 * 89.99915 * 22 21 20 40 40 H 1.09006 * 109.47175 * 210.00008 * 22 21 20 41 41 H 1.09002 * 109.47098 * 330.00166 * 22 21 20 42 42 H 1.08004 * 120.15040 * 180.27934 * 23 21 20 43 43 H 1.07997 * 120.33182 * 179.67951 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3490 1.9914 -1.1823 5 1 2.0743 3.0219 -1.3534 6 6 3.0371 1.2842 -2.1605 7 7 3.6791 0.1817 -1.8451 8 14 3.0499 1.9004 -3.9239 9 1 4.2055 2.8119 -4.1214 10 1 3.1659 0.7461 -4.8508 11 1 1.7884 2.6332 -4.2013 12 6 2.1427 2.0521 1.1624 13 8 2.5474 3.1955 1.1624 14 6 1.7788 1.3815 2.4620 15 16 2.0527 2.5350 3.8350 16 6 1.5680 1.5626 5.2877 17 6 1.7422 2.3961 6.5310 18 6 2.8637 2.4681 7.2809 19 7 2.6060 3.3303 8.3117 20 6 3.3638 3.7720 9.3574 21 6 2.8542 4.6386 10.2577 22 6 3.7042 5.1103 11.4092 23 6 1.5371 5.1080 10.1225 24 6 0.7708 4.6756 9.0852 25 6 1.3154 3.7657 8.1570 26 7 0.8146 3.1883 7.0739 27 1 -0.3634 -1.0275 -0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.1598 -0.3118 -2.5279 33 1 2.4002 0.4968 2.6008 34 1 0.7293 1.0883 2.4381 35 1 2.1952 0.6738 5.3557 36 1 0.5239 1.2641 5.1932 37 1 3.7901 1.9430 7.1007 38 1 4.3792 3.4209 9.4682 39 1 4.2432 6.0117 11.1176 40 1 3.0665 5.3293 12.2657 41 1 4.4177 4.3311 11.6772 42 1 1.1331 5.8050 10.8418 43 1 -0.2448 5.0257 8.9743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127953806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:49 Heat of formation + Delta-G solvation = 38.620331 kcal Electronic energy + Delta-G solvation = -24657.470101 eV Core-core repulsion = 21022.755419 eV Total energy + Delta-G solvation = -3634.714681 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.81646 -40.39470 -38.86479 -36.92805 -34.75088 -34.13802 -33.63297 -31.37796 -31.22173 -30.76361 -28.85668 -26.92339 -26.57680 -24.24154 -23.96778 -23.06102 -21.80942 -20.91823 -18.82574 -18.72235 -17.83184 -17.69982 -17.40457 -17.00516 -16.82603 -16.20415 -16.13889 -15.86039 -15.61238 -15.05697 -14.80586 -14.62007 -14.58861 -14.31251 -14.20791 -13.86076 -13.73191 -13.49231 -13.19245 -13.15453 -13.03400 -12.87828 -12.68764 -12.42233 -12.35102 -12.24523 -12.09055 -11.85804 -11.83089 -11.16690 -10.96292 -10.83768 -10.48714 -9.54337 -9.43900 -8.84209 -8.63146 -8.36312 -6.12965 -0.26231 0.21819 0.51526 1.37047 1.40541 1.52947 1.56049 1.62551 1.97871 2.05433 2.29318 2.54149 2.98538 3.02856 3.12197 3.38248 3.74762 3.88824 3.94246 4.02559 4.07654 4.13024 4.18837 4.20121 4.43164 4.44639 4.49601 4.60437 4.61637 4.75014 4.82880 4.89197 4.90812 5.01940 5.09799 5.24987 5.28792 5.33419 5.44010 5.51374 5.53142 5.61267 6.09249 6.20968 6.50845 6.82701 7.14787 7.39501 8.01239 8.67582 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.028831 B = 0.002046 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.940005 B =13682.068433 C =13997.930733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.100 3.900 3 N -0.448 5.448 4 C -0.341 4.341 5 H 0.059 0.941 6 C 0.005 3.995 7 N -0.889 5.889 8 Si 0.983 3.017 9 H -0.280 1.280 10 H -0.264 1.264 11 H -0.267 1.267 12 C 0.461 3.539 13 O -0.614 6.614 14 C -0.095 4.095 15 S -0.237 6.237 16 C -0.007 4.007 17 C 0.052 3.948 18 C -0.077 4.077 19 N -0.364 5.364 20 C 0.033 3.967 21 C -0.107 4.107 22 C -0.101 4.101 23 C -0.081 4.081 24 C -0.104 4.104 25 C 0.200 3.800 26 N -0.526 5.526 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.274 0.726 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.211 0.789 38 H 0.190 0.810 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.178 0.822 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.875 0.291 27.224 27.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.023 4.023 3 N -0.167 5.167 4 C -0.470 4.470 5 H 0.077 0.923 6 C -0.198 4.198 7 N -0.526 5.526 8 Si 0.806 3.194 9 H -0.206 1.206 10 H -0.188 1.188 11 H -0.192 1.192 12 C 0.249 3.751 13 O -0.500 6.500 14 C -0.246 4.246 15 S -0.010 6.010 16 C -0.156 4.156 17 C -0.081 4.081 18 C -0.211 4.211 19 N -0.034 5.034 20 C -0.088 4.088 21 C -0.110 4.110 22 C -0.158 4.158 23 C -0.104 4.104 24 C -0.124 4.124 25 C -0.044 4.044 26 N -0.247 5.247 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.117 0.883 37 H 0.228 0.772 38 H 0.207 0.793 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.195 0.805 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.945 1.740 26.682 26.809 hybrid contribution 0.409 -1.130 -1.109 1.635 sum -1.536 0.610 25.573 25.626 Atomic orbital electron populations 1.22130 0.95195 1.02707 1.01332 1.21630 0.94058 0.83177 1.03421 1.43666 1.55989 1.13121 1.03966 1.19317 1.36894 0.98212 0.92553 0.92295 1.26172 0.92992 0.96601 1.03996 1.69983 1.29167 1.18030 1.35402 0.85118 0.78727 0.78235 0.77338 1.20561 1.18848 1.19152 1.20419 0.81595 0.87566 0.85528 1.90520 1.51649 1.20641 1.87184 1.23435 1.06752 1.01049 0.93357 1.87956 1.87850 1.25167 0.99983 1.21616 1.06140 0.98408 0.89414 1.20022 0.91133 0.99928 0.96971 1.22775 1.02988 1.03220 0.92166 1.42903 1.12425 1.29357 1.18740 1.22103 0.98604 1.00327 0.87727 1.19995 0.96011 0.96999 0.97956 1.20772 0.98885 1.02352 0.93771 1.21462 0.92846 0.98949 0.97174 1.20559 1.02359 0.96371 0.93120 1.21449 0.83389 1.02071 0.97512 1.70526 1.31849 1.13689 1.08670 0.89295 0.92871 0.93953 0.89932 0.91208 0.91593 0.86281 0.86267 0.85829 0.88287 0.77211 0.79304 0.89778 0.89117 0.89921 0.80495 0.82313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.31 10.15 71.98 0.73 -4.58 16 2 C 0.10 4.25 5.41 86.38 0.47 4.72 16 3 N -0.45 -23.50 2.50 -635.52 -1.59 -25.09 16 4 C -0.34 -19.87 8.84 84.04 0.74 -19.13 16 5 H 0.06 3.69 7.82 -2.91 -0.02 3.67 16 6 C 0.01 0.29 4.95 84.93 0.42 0.71 16 7 N -0.89 -48.31 11.61 21.66 0.25 -48.06 16 8 Si 0.98 43.12 29.59 68.60 2.03 45.15 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 12 C 0.46 24.04 7.61 87.66 0.67 24.71 16 13 O -0.61 -37.92 15.78 -3.06 -0.05 -37.97 16 14 C -0.10 -3.67 5.03 71.24 0.36 -3.31 16 15 S -0.24 -9.27 20.86 -56.49 -1.18 -10.45 16 16 C -0.01 -0.21 6.47 71.23 0.46 0.25 16 17 C 0.05 1.57 6.32 41.58 0.26 1.83 16 18 C -0.08 -1.91 11.66 83.19 0.97 -0.94 16 19 N -0.36 -8.45 2.94 -352.15 -1.04 -9.48 16 20 C 0.03 0.50 10.56 83.22 0.88 1.38 16 21 C -0.11 -1.18 5.85 -20.07 -0.12 -1.30 16 22 C -0.10 -0.35 10.00 71.23 0.71 0.36 16 23 C -0.08 -0.97 9.74 22.30 0.22 -0.76 16 24 C -0.10 -2.02 10.11 22.41 0.23 -1.79 16 25 C 0.20 5.49 7.81 134.10 1.05 6.53 16 26 N -0.53 -17.54 11.32 -182.41 -2.06 -19.61 16 27 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.05 1.69 6.60 -2.38 -0.02 1.68 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.08 3.89 5.76 -2.39 -0.01 3.88 16 31 H 0.07 2.59 6.66 -2.39 -0.02 2.58 16 32 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 33 H 0.12 4.00 7.41 -2.39 -0.02 3.99 16 34 H 0.12 3.96 6.54 -2.39 -0.02 3.94 16 35 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.21 3.75 8.06 -2.91 -0.02 3.73 16 38 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.09 0.08 8.09 -2.38 -0.02 0.06 16 41 H 0.08 0.13 8.07 -2.39 -0.02 0.11 16 42 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 43 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -83.73 374.61 5.43 -78.30 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 1.02 Total: 18.52 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 8.04 Total: 8.69 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -4.44 Total: -102.23 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -0.05 Total: -37.97 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -9.27 SS G_CDS: -1.18 Total: -10.45 kcal Total: -83.73 5.43 -78.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127953806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.922 kcal (2) G-P(sol) polarization free energy of solvation -83.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds