Wall clock time and date at job start Tue Mar 31 2020 18:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.47078 * 2 1 4 4 C 1.50695 * 109.47239 * 119.99985 * 2 1 3 5 5 H 1.07997 * 119.99974 * 120.00047 * 4 2 1 6 6 C 1.37881 * 120.00079 * 299.99794 * 4 2 1 7 7 N 1.31517 * 119.99656 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99913 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47294 * 90.00351 * 8 6 4 10 10 H 1.48505 * 109.46886 * 209.99930 * 8 6 4 11 11 H 1.48500 * 109.47309 * 330.00089 * 8 6 4 12 12 N 1.46500 * 109.46872 * 240.00145 * 2 1 3 13 13 C 1.46496 * 119.99880 * 299.99714 * 12 2 1 14 14 C 1.34782 * 120.00047 * 119.99794 * 12 2 1 15 15 O 1.21604 * 119.99777 * 5.32850 * 14 12 2 16 16 C 1.47459 * 119.99702 * 185.32904 * 14 12 2 17 17 N 1.32004 * 126.44956 * 5.45530 * 16 14 12 18 18 N 1.28469 * 110.21970 * 179.81734 * 17 16 14 19 19 C 1.40130 * 124.93978 * 180.14714 * 18 17 16 20 20 C 1.38855 * 120.04593 * 180.02562 * 19 18 17 21 21 C 1.38089 * 119.95486 * 179.76790 * 20 19 18 22 22 C 1.38503 * 120.04633 * 0.52593 * 21 20 19 23 23 F 1.35098 * 119.95772 * 179.71931 * 22 21 20 24 24 C 1.38494 * 120.08148 * 359.71024 * 22 21 20 25 25 C 1.38087 * 120.04758 * 0.03173 * 24 22 21 26 26 C 1.36101 * 110.12627 * 0.45567 * 18 17 16 27 27 C 1.35770 * 107.06723 * 359.72436 * 26 18 17 28 28 O 1.36073 * 127.26316 * 179.97438 * 27 26 18 29 29 H 1.08998 * 109.47243 * 59.99586 * 1 2 3 30 30 H 1.08993 * 109.46799 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46425 * 300.00126 * 1 2 3 32 32 H 0.97007 * 119.99403 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47003 * 95.29317 * 13 12 2 34 34 H 1.09006 * 109.47251 * 215.28994 * 13 12 2 35 35 H 1.08997 * 109.47197 * 335.29262 * 13 12 2 36 36 H 1.07999 * 120.02303 * 0.02742 * 20 19 18 37 37 H 1.08001 * 119.97847 * 180.23445 * 21 20 19 38 38 H 1.08006 * 119.97304 * 180.02562 * 24 22 21 39 39 H 1.07999 * 120.02347 * 180.02562 * 25 24 22 40 40 H 1.08002 * 126.46854 * 179.76394 * 26 18 17 41 41 H 0.96700 * 113.99990 * 270.00565 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3227 -1.1195 4.0079 9 1 3.6307 -0.5439 4.4118 10 1 1.3446 -0.9489 5.1123 11 1 2.4882 -2.5653 3.7121 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4280 14 6 2.7932 -0.0356 -2.0834 15 8 3.1670 1.0967 -1.8446 16 6 3.1875 -0.6919 -3.3436 17 7 2.7761 -1.8691 -3.7769 18 7 3.3130 -2.1364 -4.9130 19 6 3.0879 -3.3057 -5.6517 20 6 3.7243 -3.4906 -6.8719 21 6 3.5047 -4.6457 -7.5961 22 6 2.6421 -5.6147 -7.1112 23 9 2.4242 -6.7416 -7.8239 24 6 2.0026 -5.4300 -5.8967 25 6 2.2236 -4.2786 -5.1671 26 6 4.1376 -1.1220 -5.2916 27 6 4.0847 -0.1800 -4.3153 28 8 4.7522 1.0051 -4.2769 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 0.7083 1.1609 3.4844 33 1 0.7908 -2.1448 -2.0778 34 1 2.5013 -2.6054 -1.9029 35 1 1.4379 -2.5728 -0.4758 36 1 4.3937 -2.7333 -7.2524 37 1 4.0025 -4.7915 -8.5434 38 1 1.3306 -6.1869 -5.5201 39 1 1.7251 -4.1352 -4.2198 40 1 4.7230 -1.0749 -6.1980 41 1 5.6186 0.9549 -3.8504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136999505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:34 Heat of formation + Delta-G solvation = 10.109043 kcal Electronic energy + Delta-G solvation = -28028.296695 eV Core-core repulsion = 23826.132495 eV Total energy + Delta-G solvation = -4202.164200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.34167 -43.01645 -39.53238 -38.62835 -37.18110 -35.23776 -33.55265 -32.65285 -31.96606 -30.28742 -29.55064 -28.64771 -26.08091 -25.21208 -24.54633 -23.86058 -22.36741 -21.30368 -20.68391 -19.20289 -18.32418 -18.03438 -17.40486 -16.70868 -16.53926 -16.28030 -16.12621 -15.93223 -15.32613 -15.05725 -14.42968 -14.35924 -14.25047 -14.20354 -13.96088 -13.64970 -13.38033 -12.94084 -12.76339 -12.52829 -12.25887 -12.10907 -11.59561 -11.53169 -11.07990 -11.00564 -10.84890 -10.71360 -10.28708 -10.23945 -10.14636 -10.06869 -9.74949 -9.23448 -9.16268 -9.09436 -8.40919 -8.36421 -7.53981 -6.05117 -4.12849 0.20927 0.61918 1.77373 1.92858 2.07095 3.07983 3.28865 3.35214 3.37019 3.71579 3.73792 3.91597 3.99945 4.19173 4.29523 4.42715 4.49999 4.58602 4.67844 4.92928 5.02399 5.23590 5.26376 5.33191 5.47764 5.53055 5.62251 5.70934 5.98816 6.12320 6.14783 6.23788 6.49606 6.67892 6.80210 6.89254 7.09144 7.44669 7.54681 7.67512 7.73638 7.74455 8.04337 8.21579 8.52929 8.84325 9.04217 9.53176 11.00304 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014929 B = 0.002976 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.109607 B = 9407.077572 C =10647.773583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.575 5.575 13 C 0.090 3.910 14 C 0.581 3.419 15 O -0.532 6.532 16 C 0.001 3.999 17 N -0.243 5.243 18 N -0.239 5.239 19 C 0.139 3.861 20 C -0.102 4.102 21 C -0.129 4.129 22 C 0.094 3.906 23 F -0.135 7.135 24 C -0.129 4.129 25 C -0.081 4.081 26 C -0.048 4.048 27 C 0.056 3.944 28 O -0.451 6.451 29 H 0.011 0.989 30 H 0.030 0.970 31 H 0.094 0.906 32 H 0.263 0.737 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.188 0.812 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.337 -12.438 -20.754 24.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.306 5.306 13 C -0.054 4.054 14 C 0.365 3.635 15 O -0.408 6.408 16 C -0.162 4.162 17 N -0.077 5.077 18 N -0.022 5.022 19 C 0.047 3.953 20 C -0.122 4.122 21 C -0.149 4.149 22 C 0.074 3.926 23 F -0.114 7.114 24 C -0.148 4.148 25 C -0.101 4.101 26 C -0.188 4.188 27 C 0.001 3.999 28 O -0.256 6.256 29 H 0.030 0.970 30 H 0.049 0.951 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.173 0.827 40 H 0.205 0.795 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.243 -12.418 -20.498 24.339 hybrid contribution 1.190 -0.245 0.660 1.383 sum 5.434 -12.663 -19.838 24.154 Atomic orbital electron populations 1.22090 0.97956 0.99540 1.00862 1.19015 0.90960 0.94518 0.79678 0.91781 1.21309 1.31806 1.13025 0.90206 0.92186 1.24889 0.94934 0.94998 0.98930 1.69886 1.36288 1.22638 1.23747 0.86486 0.78642 0.79853 0.82343 1.20608 1.21136 1.19930 1.48152 1.47580 1.11983 1.22849 1.21729 0.99720 0.82578 1.01405 1.16841 0.80072 0.85439 0.81174 1.90793 1.55479 1.18007 1.76475 1.23120 1.01912 0.92224 0.98933 1.74021 1.20069 1.16386 0.97184 1.42336 1.32201 1.13488 1.14195 1.17630 1.00115 0.85442 0.92084 1.20691 1.00487 0.98498 0.92571 1.20947 0.99425 0.92940 1.01551 1.17773 0.99059 0.84149 0.91621 1.91528 1.93509 1.48886 1.77462 1.21103 1.01237 0.98834 0.93611 1.20897 0.96593 0.91403 1.01178 1.22833 1.02076 0.90048 1.03801 1.18124 0.99445 0.88549 0.93786 1.84895 1.35018 1.24783 1.80948 0.96953 0.95052 0.88712 0.92677 0.93867 0.91706 0.90403 0.83810 0.83521 0.83384 0.82738 0.79529 0.75527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.97 37.16 0.33 -3.24 16 2 C 0.26 6.75 2.63 -69.08 -0.18 6.57 16 3 H 0.06 1.93 6.91 -51.93 -0.36 1.57 16 4 C -0.52 -14.35 7.95 -34.44 -0.27 -14.62 16 5 H 0.06 1.62 7.42 -52.49 -0.39 1.23 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.23 11.32 55.43 0.63 -24.61 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.58 -13.05 2.75 -176.52 -0.49 -13.54 16 13 C 0.09 1.66 8.25 59.84 0.49 2.16 16 14 C 0.58 13.12 7.66 -12.50 -0.10 13.03 16 15 O -0.53 -13.75 15.88 3.41 0.05 -13.69 16 16 C 0.00 0.02 6.76 -82.67 -0.56 -0.54 16 17 N -0.24 -3.77 7.90 33.46 0.26 -3.51 16 18 N -0.24 -2.98 3.52 -10.39 -0.04 -3.01 16 19 C 0.14 1.35 6.66 -83.60 -0.56 0.79 16 20 C -0.10 -0.70 9.43 -39.41 -0.37 -1.08 16 21 C -0.13 -0.81 10.02 -39.54 -0.40 -1.21 16 22 C 0.09 0.71 7.30 -39.39 -0.29 0.42 16 23 F -0.14 -1.13 17.27 2.25 0.04 -1.09 16 24 C -0.13 -0.96 10.02 -39.54 -0.40 -1.36 16 25 C -0.08 -0.73 9.59 -39.40 -0.38 -1.11 16 26 C -0.05 -0.55 10.81 -16.54 -0.18 -0.73 16 27 C 0.06 0.86 7.35 -39.10 -0.29 0.57 16 28 O -0.45 -6.68 13.21 -21.84 -0.29 -6.96 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 31 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 1.10 5.92 -51.93 -0.31 0.79 16 35 H 0.08 1.48 7.10 -51.93 -0.37 1.12 16 36 H 0.14 0.65 6.64 -52.49 -0.35 0.30 16 37 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.15 1.46 7.64 -52.49 -0.40 1.06 16 40 H 0.19 1.31 6.96 -52.49 -0.37 0.94 16 41 H 0.39 4.01 9.07 45.56 0.41 4.42 16 LS Contribution 353.54 15.07 5.33 5.33 Total: -1.00 -34.15 353.54 -6.42 -40.56 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -3.67 Total: 3.08 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -3.23 Total: 1.34 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.37 Total: -44.66 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.23 Total: -20.66 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.15 -6.42 -40.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136999505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.669 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds