Wall clock time and date at job start Tue Mar 31 2020 18:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.47078 * 2 1 4 4 C 1.50695 * 109.47239 * 119.99985 * 2 1 3 5 5 H 1.07997 * 119.99974 * 120.00047 * 4 2 1 6 6 C 1.37881 * 120.00079 * 299.99794 * 4 2 1 7 7 N 1.31517 * 119.99656 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99913 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47294 * 90.00351 * 8 6 4 10 10 H 1.48505 * 109.46886 * 209.99930 * 8 6 4 11 11 H 1.48500 * 109.47309 * 330.00089 * 8 6 4 12 12 N 1.46500 * 109.46872 * 240.00145 * 2 1 3 13 13 C 1.46496 * 119.99880 * 299.99714 * 12 2 1 14 14 C 1.34782 * 120.00047 * 119.99794 * 12 2 1 15 15 O 1.21604 * 119.99777 * 5.32850 * 14 12 2 16 16 C 1.47459 * 119.99702 * 185.32904 * 14 12 2 17 17 N 1.32004 * 126.44956 * 5.45530 * 16 14 12 18 18 N 1.28469 * 110.21970 * 179.81734 * 17 16 14 19 19 C 1.40130 * 124.93978 * 180.14714 * 18 17 16 20 20 C 1.38855 * 120.04593 * 180.02562 * 19 18 17 21 21 C 1.38089 * 119.95486 * 179.76790 * 20 19 18 22 22 C 1.38503 * 120.04633 * 0.52593 * 21 20 19 23 23 F 1.35098 * 119.95772 * 179.71931 * 22 21 20 24 24 C 1.38494 * 120.08148 * 359.71024 * 22 21 20 25 25 C 1.38087 * 120.04758 * 0.03173 * 24 22 21 26 26 C 1.36101 * 110.12627 * 0.45567 * 18 17 16 27 27 C 1.35770 * 107.06723 * 359.72436 * 26 18 17 28 28 O 1.36073 * 127.26316 * 179.97438 * 27 26 18 29 29 H 1.08998 * 109.47243 * 59.99586 * 1 2 3 30 30 H 1.08993 * 109.46799 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46425 * 300.00126 * 1 2 3 32 32 H 0.97007 * 119.99403 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47003 * 95.29317 * 13 12 2 34 34 H 1.09006 * 109.47251 * 215.28994 * 13 12 2 35 35 H 1.08997 * 109.47197 * 335.29262 * 13 12 2 36 36 H 1.07999 * 120.02303 * 0.02742 * 20 19 18 37 37 H 1.08001 * 119.97847 * 180.23445 * 21 20 19 38 38 H 1.08006 * 119.97304 * 180.02562 * 24 22 21 39 39 H 1.07999 * 120.02347 * 180.02562 * 25 24 22 40 40 H 1.08002 * 126.46854 * 179.76394 * 26 18 17 41 41 H 0.96700 * 113.99990 * 270.00565 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3227 -1.1195 4.0079 9 1 3.6307 -0.5439 4.4118 10 1 1.3446 -0.9489 5.1123 11 1 2.4882 -2.5653 3.7121 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4280 14 6 2.7932 -0.0356 -2.0834 15 8 3.1670 1.0967 -1.8446 16 6 3.1875 -0.6919 -3.3436 17 7 2.7761 -1.8691 -3.7769 18 7 3.3130 -2.1364 -4.9130 19 6 3.0879 -3.3057 -5.6517 20 6 3.7243 -3.4906 -6.8719 21 6 3.5047 -4.6457 -7.5961 22 6 2.6421 -5.6147 -7.1112 23 9 2.4242 -6.7416 -7.8239 24 6 2.0026 -5.4300 -5.8967 25 6 2.2236 -4.2786 -5.1671 26 6 4.1376 -1.1220 -5.2916 27 6 4.0847 -0.1800 -4.3153 28 8 4.7522 1.0051 -4.2769 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 0.7083 1.1609 3.4844 33 1 0.7908 -2.1448 -2.0778 34 1 2.5013 -2.6054 -1.9029 35 1 1.4379 -2.5728 -0.4758 36 1 4.3937 -2.7333 -7.2524 37 1 4.0025 -4.7915 -8.5434 38 1 1.3306 -6.1869 -5.5201 39 1 1.7251 -4.1352 -4.2198 40 1 4.7230 -1.0749 -6.1980 41 1 5.6186 0.9549 -3.8504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136999505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:34 Heat of formation + Delta-G solvation = -13.071527 kcal Electronic energy + Delta-G solvation = -28029.301880 eV Core-core repulsion = 23826.132495 eV Total energy + Delta-G solvation = -4203.169385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.95238 -44.07094 -40.65273 -39.90693 -38.26407 -37.11134 -34.99409 -34.15757 -32.58640 -31.67456 -30.89554 -29.74809 -27.68624 -27.32174 -25.77271 -24.53117 -23.50693 -22.22335 -22.15605 -20.48187 -19.55228 -18.75952 -18.54637 -18.29815 -17.92846 -17.38345 -17.28057 -16.96145 -16.61586 -16.20785 -15.91172 -15.77463 -15.38781 -15.13387 -14.78616 -14.61882 -14.42248 -14.23216 -14.00616 -13.93437 -13.57819 -13.46420 -13.43409 -12.97239 -12.76298 -12.72145 -12.39285 -12.20591 -12.10695 -12.07998 -11.54471 -11.21742 -11.05175 -10.88851 -10.52943 -10.28821 -10.16390 -9.45072 -9.16411 -8.15042 -6.31801 -0.52935 0.08339 0.57399 0.97679 1.14874 1.41836 1.43229 1.53487 2.20042 2.29703 2.45327 2.48753 2.94796 3.12889 3.15745 3.46523 3.63048 3.68490 3.81828 3.86448 4.09212 4.21633 4.46925 4.47062 4.56641 4.73673 4.73716 4.83583 4.85262 4.88794 4.97032 5.00713 5.02640 5.06683 5.13241 5.44483 5.51882 5.58282 5.64641 5.85716 6.00434 6.14047 6.57899 6.72990 6.75226 6.77971 7.23920 7.42024 8.89853 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014929 B = 0.002976 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.109607 B = 9407.077572 C =10647.773583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.263 3.737 3 H 0.012 0.988 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.967 3.033 9 H -0.281 1.281 10 H -0.278 1.278 11 H -0.262 1.262 12 N -0.585 5.585 13 C 0.097 3.903 14 C 0.574 3.426 15 O -0.582 6.582 16 C -0.042 4.042 17 N -0.246 5.246 18 N -0.225 5.225 19 C 0.105 3.895 20 C -0.084 4.084 21 C -0.121 4.121 22 C 0.092 3.908 23 F -0.140 7.140 24 C -0.131 4.131 25 C -0.089 4.089 26 C -0.015 4.015 27 C 0.032 3.968 28 O -0.467 6.467 29 H 0.017 0.983 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.266 0.734 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.177 0.823 37 H 0.177 0.823 38 H 0.162 0.838 39 H 0.144 0.856 40 H 0.241 0.759 41 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.484 -15.185 -23.393 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.161 3.839 3 H 0.030 0.970 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.792 3.208 9 H -0.207 1.207 10 H -0.203 1.203 11 H -0.186 1.186 12 N -0.315 5.315 13 C -0.046 4.046 14 C 0.361 3.639 15 O -0.461 6.461 16 C -0.202 4.202 17 N -0.082 5.082 18 N -0.008 5.008 19 C 0.015 3.985 20 C -0.104 4.104 21 C -0.140 4.140 22 C 0.072 3.928 23 F -0.118 7.118 24 C -0.150 4.150 25 C -0.109 4.109 26 C -0.155 4.155 27 C -0.023 4.023 28 O -0.274 6.274 29 H 0.037 0.963 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.194 0.806 37 H 0.195 0.805 38 H 0.179 0.821 39 H 0.162 0.838 40 H 0.257 0.743 41 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 5.382 -15.215 -23.154 28.224 hybrid contribution 0.843 0.466 1.275 1.597 sum 6.224 -14.749 -21.880 27.111 Atomic orbital electron populations 1.21881 0.96873 1.00201 1.00019 1.18638 0.91733 0.92275 0.81251 0.96990 1.21529 1.32105 1.13144 0.91034 0.92208 1.25746 0.94964 0.95643 1.01988 1.70024 1.37108 1.23857 1.24546 0.85420 0.77855 0.79143 0.78383 1.20695 1.20347 1.18621 1.48139 1.47875 1.13397 1.22066 1.21810 1.01027 0.80299 1.01415 1.17420 0.79053 0.85052 0.82399 1.90734 1.57243 1.20179 1.77953 1.22486 1.05174 0.94185 0.98387 1.73863 1.20424 1.15226 0.98683 1.42635 1.30838 1.14243 1.13110 1.17999 1.02256 0.84866 0.93406 1.21033 0.99457 0.99100 0.90816 1.21285 0.98495 0.91903 1.02347 1.18014 0.99071 0.84242 0.91468 1.91527 1.93547 1.49245 1.77489 1.21213 1.01495 0.98629 0.93676 1.20909 0.96812 0.92026 1.01154 1.23441 1.00492 0.87753 1.03793 1.18347 0.99970 0.89611 0.94403 1.84843 1.36141 1.25352 1.81109 0.96349 0.93444 0.90895 0.92506 0.92286 0.90052 0.91094 0.80588 0.80522 0.82089 0.83791 0.74260 0.73858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.67 8.97 71.98 0.65 -6.03 16 2 C 0.26 14.47 2.63 44.25 0.12 14.59 16 3 H 0.01 0.79 6.91 -2.39 -0.02 0.77 16 4 C -0.54 -30.44 7.95 25.60 0.20 -30.24 16 5 H 0.06 3.29 7.42 -2.91 -0.02 3.27 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.92 -53.80 11.32 21.45 0.24 -53.55 16 8 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 9 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 12 N -0.59 -27.72 2.75 -830.62 -2.29 -30.00 16 13 C 0.10 3.64 8.25 127.77 1.05 4.70 16 14 C 0.57 27.35 7.66 86.67 0.66 28.01 16 15 O -0.58 -32.28 15.88 -2.26 -0.04 -32.32 16 16 C -0.04 -1.57 6.76 42.44 0.29 -1.28 16 17 N -0.25 -7.45 7.90 -48.06 -0.38 -7.83 16 18 N -0.22 -5.02 3.52 -186.80 -0.66 -5.68 16 19 C 0.10 1.70 6.66 38.11 0.25 1.95 16 20 C -0.08 -0.74 9.43 22.38 0.21 -0.53 16 21 C -0.12 -0.94 10.02 22.30 0.22 -0.72 16 22 C 0.09 1.08 7.30 22.39 0.16 1.24 16 23 F -0.14 -1.90 17.27 44.97 0.78 -1.13 16 24 C -0.13 -1.64 10.02 22.29 0.22 -1.42 16 25 C -0.09 -1.44 9.59 22.38 0.21 -1.23 16 26 C -0.01 -0.29 10.81 83.46 0.90 0.61 16 27 C 0.03 0.96 7.35 22.58 0.17 1.12 16 28 O -0.47 -13.85 13.21 -92.59 -1.22 -15.07 16 29 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 2.19 7.67 -2.39 -0.02 2.17 16 31 H 0.07 4.03 6.07 -2.38 -0.01 4.02 16 32 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 33 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.08 2.76 5.92 -2.38 -0.01 2.75 16 35 H 0.07 2.73 7.10 -2.39 -0.02 2.71 16 36 H 0.18 0.39 6.64 -2.91 -0.02 0.37 16 37 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 38 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.14 2.59 7.64 -2.91 -0.02 2.57 16 40 H 0.24 1.90 6.96 -2.91 -0.02 1.87 16 41 H 0.40 8.45 9.07 -74.06 -0.67 7.78 16 Total: -1.00 -79.50 353.54 4.67 -74.83 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.43 Total: 12.81 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 5.78 Total: 12.14 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -3.08 Total: -97.07 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -1.26 Total: -47.39 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.78 Total: -1.13 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -79.50 4.67 -74.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136999505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.762 kcal (2) G-P(sol) polarization free energy of solvation -79.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds