Wall clock time and date at job start Tue Mar 31 2020 17:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47028 * 2 1 4 4 O 1.42899 * 109.47459 * 240.00083 * 2 1 3 5 5 C 1.35951 * 116.99538 * 301.74720 * 4 2 1 6 6 C 1.38702 * 120.03231 * 354.03256 * 5 4 2 7 7 C 1.38150 * 119.97006 * 179.79083 * 6 5 4 8 8 C 1.38450 * 120.02793 * 0.48367 * 7 6 5 9 9 F 1.35103 * 119.96944 * 179.72073 * 8 7 6 10 10 C 1.38450 * 120.06147 * 359.75028 * 8 7 6 11 11 C 1.38149 * 120.03245 * 0.02562 * 10 8 7 12 12 C 1.50700 * 109.47068 * 119.99404 * 2 1 3 13 13 O 1.21300 * 119.99378 * 120.00493 * 12 2 1 14 14 N 1.34775 * 120.00173 * 300.00249 * 12 2 1 15 15 C 1.40593 * 119.99789 * 179.97438 * 14 12 2 16 16 C 1.40648 * 126.08182 * 0.02562 * 15 14 12 17 17 N 1.30916 * 108.38396 * 179.71461 * 16 15 14 18 18 N 1.40068 * 108.40640 * 0.44496 * 17 16 15 19 19 C 1.37321 * 126.06760 * 179.80896 * 18 17 16 20 20 H 1.07996 * 119.99846 * 179.69231 * 19 18 17 21 21 C 1.38982 * 120.00114 * 359.97422 * 19 18 17 22 22 N 1.31303 * 120.00049 * 359.71695 * 21 19 18 23 23 Si 1.86796 * 120.00111 * 179.72062 * 21 19 18 24 24 H 1.48496 * 109.47252 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47125 * 119.99656 * 23 21 19 26 26 H 1.48504 * 109.47378 * 239.99507 * 23 21 19 27 27 C 1.35681 * 126.08141 * 179.97438 * 15 14 12 28 28 H 1.09001 * 109.47584 * 292.64882 * 1 2 3 29 29 H 1.09007 * 109.47263 * 52.64950 * 1 2 3 30 30 H 1.09003 * 109.46974 * 172.64491 * 1 2 3 31 31 H 1.08994 * 109.47129 * 184.79824 * 3 2 1 32 32 H 1.09004 * 109.46930 * 304.79352 * 3 2 1 33 33 H 1.08995 * 109.46781 * 64.79151 * 3 2 1 34 34 H 1.08000 * 120.01478 * 0.02562 * 6 5 4 35 35 H 1.07996 * 119.98447 * 180.21281 * 7 6 5 36 36 H 1.08003 * 119.98569 * 179.97438 * 10 8 7 37 37 H 1.08001 * 120.01549 * 179.97438 * 11 10 8 38 38 H 0.96993 * 119.99883 * 0.02562 * 14 12 2 39 39 H 1.07993 * 125.81086 * 0.02562 * 16 15 14 40 40 H 0.96996 * 119.99989 * 180.02562 * 22 21 19 41 41 H 1.08003 * 126.24639 * 0.04274 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 1.6112 -1.9629 -1.3396 6 6 0.8858 -2.6055 -0.3473 7 6 0.4811 -3.9143 -0.5261 8 6 0.8080 -4.5876 -1.6909 9 9 0.4165 -5.8692 -1.8621 10 6 1.5362 -3.9488 -2.6801 11 6 1.9382 -2.6386 -2.5059 12 6 2.0323 -0.7103 1.2305 13 8 2.7297 -1.6965 1.1192 14 7 1.7067 -0.2498 2.4546 15 6 2.1749 -0.9128 3.6026 16 6 2.9868 -2.0611 3.6227 17 7 3.2196 -2.3804 4.8708 18 7 2.5598 -1.4586 5.6935 19 6 2.5580 -1.4571 7.0667 20 1 2.0173 -0.6929 7.6051 21 6 3.2568 -2.4357 7.7637 22 7 3.9142 -3.3649 7.1091 23 14 3.2607 -2.4291 9.6316 24 1 2.4511 -1.2859 10.1243 25 1 2.6789 -3.7004 10.1323 26 1 4.6556 -2.2956 10.1233 27 6 1.9247 -0.5581 4.8881 28 1 -0.3634 0.3957 0.9484 29 1 -0.3634 0.6235 -0.8170 30 1 -0.3633 -1.0192 -0.1316 31 1 3.1265 1.4438 -0.0860 32 1 1.6082 1.9806 -0.8440 33 1 1.7484 1.9310 0.9298 34 1 0.6341 -2.0818 0.5631 35 1 -0.0866 -4.4138 0.2449 36 1 1.7909 -4.4753 -3.5881 37 1 2.5066 -2.1408 -3.2776 38 1 1.1487 0.5386 2.5435 39 1 3.3595 -2.5867 2.7560 40 1 4.4015 -4.0481 7.5955 41 1 1.3304 0.2825 5.2145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139525543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:52 Heat of formation + Delta-G solvation = 12.569237 kcal Electronic energy + Delta-G solvation = -28525.076748 eV Core-core repulsion = 24323.019230 eV Total energy + Delta-G solvation = -4202.057518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -48.73606 -41.35988 -39.68296 -38.44723 -37.10996 -34.57738 -33.69430 -32.80143 -31.17170 -30.27621 -29.44656 -27.79641 -27.54376 -25.12049 -23.90009 -22.79830 -22.44760 -21.02586 -20.20953 -19.43677 -18.30034 -17.55725 -17.43156 -16.68375 -16.46029 -15.53763 -15.48225 -15.35626 -15.28544 -14.79922 -14.41538 -14.27940 -13.97239 -13.78041 -13.46104 -13.32841 -13.08144 -13.01073 -12.78226 -12.55479 -12.45173 -12.28899 -12.06764 -11.74206 -11.64831 -11.45280 -11.30667 -11.01036 -10.94941 -10.78197 -10.54184 -10.22352 -9.28849 -9.23202 -9.03396 -8.86333 -8.11927 -7.93375 -6.78620 -6.60364 -4.28359 1.22333 1.28239 2.60762 2.93743 2.98511 3.02528 3.08409 3.34484 3.59952 3.63370 3.81203 4.31923 4.37788 4.47165 4.54141 4.60590 4.75880 4.81497 4.95472 4.97747 5.12786 5.23686 5.24682 5.34802 5.40545 5.46552 5.64825 5.79312 5.87609 5.89221 6.14785 6.17031 6.20823 6.29843 6.36937 6.69489 6.80215 6.88986 7.00769 7.17228 7.29670 7.80268 8.03649 8.19972 8.52185 8.71707 9.31930 9.61108 10.35489 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.003106 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.616103 B = 9011.379231 C =10335.742317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.100 3.900 3 C -0.136 4.136 4 O -0.284 6.284 5 C 0.135 3.865 6 C -0.150 4.150 7 C -0.117 4.117 8 C 0.056 3.944 9 F -0.145 7.145 10 C -0.121 4.121 11 C -0.127 4.127 12 C 0.472 3.528 13 O -0.513 6.513 14 N -0.615 5.615 15 C -0.064 4.064 16 C -0.030 4.030 17 N -0.260 5.260 18 N -0.141 5.141 19 C -0.323 4.323 20 H 0.117 0.883 21 C 0.046 3.954 22 N -0.768 5.768 23 Si 0.935 3.065 24 H -0.263 1.263 25 H -0.273 1.273 26 H -0.274 1.274 27 C -0.083 4.083 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.396 0.604 39 H 0.175 0.825 40 H 0.275 0.725 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.055 7.483 -14.541 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.058 3.942 3 C -0.193 4.193 4 O -0.197 6.197 5 C 0.090 3.910 6 C -0.168 4.168 7 C -0.135 4.135 8 C 0.037 3.963 9 F -0.124 7.124 10 C -0.140 4.140 11 C -0.146 4.146 12 C 0.256 3.744 13 O -0.389 6.389 14 N -0.259 5.259 15 C -0.170 4.170 16 C -0.206 4.206 17 N -0.091 5.091 18 N 0.092 4.908 19 C -0.456 4.456 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.759 3.241 24 H -0.187 1.187 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.234 4.234 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.230 0.770 39 H 0.192 0.808 40 H 0.086 0.914 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.701 5.819 -13.927 16.515 hybrid contribution -0.818 0.733 0.619 1.260 sum -7.519 6.552 -13.309 16.631 Atomic orbital electron populations 1.22856 0.92924 1.05293 1.04326 1.21755 0.94962 0.93556 0.83930 1.21807 1.03330 0.90482 1.03698 1.86166 1.69577 1.22592 1.41371 1.18802 0.94273 0.84079 0.93889 1.21428 1.00792 0.95547 0.99050 1.20953 1.01298 0.94746 0.96550 1.17547 1.02363 0.79831 0.96574 1.91468 1.89530 1.35621 1.95795 1.20820 0.99273 0.94712 0.99191 1.20147 1.03845 0.93890 0.96719 1.20713 0.82994 0.86091 0.84572 1.90715 1.37271 1.25440 1.85496 1.42519 1.50095 1.29409 1.03865 1.17247 1.13341 1.01935 0.84467 1.24103 1.02521 0.97502 0.96439 1.78287 1.19030 1.13225 0.98542 1.44573 1.26526 1.14568 1.05120 1.19931 1.33940 1.14890 0.76795 0.86529 1.25652 0.95158 0.94917 1.01390 1.70226 1.22578 1.10252 1.36385 0.85760 0.78783 0.79033 0.80550 1.18675 1.19868 1.19881 1.21245 1.11067 1.01823 0.89272 0.90140 0.90164 0.89684 0.90572 0.90372 0.89817 0.84094 0.84699 0.84426 0.84464 0.77032 0.80830 0.91441 0.83701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 8.09 37.16 0.30 -1.55 16 2 C 0.10 1.21 0.96 -91.77 -0.09 1.13 16 3 C -0.14 -1.25 8.78 37.16 0.33 -0.92 16 4 O -0.28 -3.96 9.62 -39.49 -0.38 -4.34 16 5 C 0.13 1.94 5.56 -39.24 -0.22 1.72 16 6 C -0.15 -2.25 5.59 -39.44 -0.22 -2.47 16 7 C -0.12 -1.70 10.02 -39.54 -0.40 -2.09 16 8 C 0.06 0.79 7.30 -39.42 -0.29 0.50 16 9 F -0.15 -2.08 17.27 2.25 0.04 -2.04 16 10 C -0.12 -1.48 10.02 -39.54 -0.40 -1.87 16 11 C -0.13 -1.60 9.98 -39.44 -0.39 -1.99 16 12 C 0.47 7.76 4.56 -10.99 -0.05 7.71 16 13 O -0.51 -10.64 11.07 -14.37 -0.16 -10.79 16 14 N -0.61 -10.05 5.17 -10.00 -0.05 -10.10 16 15 C -0.06 -1.42 6.90 -83.84 -0.58 -2.00 16 16 C -0.03 -0.78 10.85 -17.03 -0.18 -0.96 16 17 N -0.26 -7.46 10.40 30.80 0.32 -7.14 16 18 N -0.14 -3.78 3.74 -11.41 -0.04 -3.82 16 19 C -0.32 -8.40 10.25 -14.82 -0.15 -8.55 16 20 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 21 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 22 N -0.77 -21.30 11.81 55.49 0.66 -20.65 16 23 Si 0.93 18.67 29.55 -169.99 -5.02 13.65 16 24 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 27 C -0.08 -1.88 11.49 -16.39 -0.19 -2.07 16 28 H 0.08 0.62 7.37 -51.93 -0.38 0.24 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.90 4.68 -51.93 -0.24 0.66 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.62 7.43 -51.93 -0.39 0.23 16 34 H 0.14 2.18 3.78 -52.49 -0.20 1.98 16 35 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 37 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.40 4.80 7.53 -40.82 -0.31 4.50 16 39 H 0.17 4.52 5.92 -52.49 -0.31 4.21 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.15 2.69 8.06 -52.48 -0.42 2.27 16 LS Contribution 345.30 15.07 5.20 5.20 Total: -1.00 -33.67 345.30 -6.39 -40.06 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -4.33 Total: 12.31 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -2.62 Total: -12.34 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.88 Total: -41.70 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.54 Total: -15.14 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.67 -6.39 -40.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139525543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.631 kcal (2) G-P(sol) polarization free energy of solvation -33.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds