Wall clock time and date at job start Tue Mar 31 2020 17:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47028 * 2 1 4 4 O 1.42899 * 109.47459 * 240.00083 * 2 1 3 5 5 C 1.35951 * 116.99538 * 301.74720 * 4 2 1 6 6 C 1.38702 * 120.03231 * 354.03256 * 5 4 2 7 7 C 1.38150 * 119.97006 * 179.79083 * 6 5 4 8 8 C 1.38450 * 120.02793 * 0.48367 * 7 6 5 9 9 F 1.35103 * 119.96944 * 179.72073 * 8 7 6 10 10 C 1.38450 * 120.06147 * 359.75028 * 8 7 6 11 11 C 1.38149 * 120.03245 * 0.02562 * 10 8 7 12 12 C 1.50700 * 109.47068 * 119.99404 * 2 1 3 13 13 O 1.21300 * 119.99378 * 120.00493 * 12 2 1 14 14 N 1.34775 * 120.00173 * 300.00249 * 12 2 1 15 15 C 1.40593 * 119.99789 * 179.97438 * 14 12 2 16 16 C 1.40648 * 126.08182 * 0.02562 * 15 14 12 17 17 N 1.30916 * 108.38396 * 179.71461 * 16 15 14 18 18 N 1.40068 * 108.40640 * 0.44496 * 17 16 15 19 19 C 1.37321 * 126.06760 * 179.80896 * 18 17 16 20 20 H 1.07996 * 119.99846 * 179.69231 * 19 18 17 21 21 C 1.38982 * 120.00114 * 359.97422 * 19 18 17 22 22 N 1.31303 * 120.00049 * 359.71695 * 21 19 18 23 23 Si 1.86796 * 120.00111 * 179.72062 * 21 19 18 24 24 H 1.48496 * 109.47252 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47125 * 119.99656 * 23 21 19 26 26 H 1.48504 * 109.47378 * 239.99507 * 23 21 19 27 27 C 1.35681 * 126.08141 * 179.97438 * 15 14 12 28 28 H 1.09001 * 109.47584 * 292.64882 * 1 2 3 29 29 H 1.09007 * 109.47263 * 52.64950 * 1 2 3 30 30 H 1.09003 * 109.46974 * 172.64491 * 1 2 3 31 31 H 1.08994 * 109.47129 * 184.79824 * 3 2 1 32 32 H 1.09004 * 109.46930 * 304.79352 * 3 2 1 33 33 H 1.08995 * 109.46781 * 64.79151 * 3 2 1 34 34 H 1.08000 * 120.01478 * 0.02562 * 6 5 4 35 35 H 1.07996 * 119.98447 * 180.21281 * 7 6 5 36 36 H 1.08003 * 119.98569 * 179.97438 * 10 8 7 37 37 H 1.08001 * 120.01549 * 179.97438 * 11 10 8 38 38 H 0.96993 * 119.99883 * 0.02562 * 14 12 2 39 39 H 1.07993 * 125.81086 * 0.02562 * 16 15 14 40 40 H 0.96996 * 119.99989 * 180.02562 * 22 21 19 41 41 H 1.08003 * 126.24639 * 0.04274 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 1.6112 -1.9629 -1.3396 6 6 0.8858 -2.6055 -0.3473 7 6 0.4811 -3.9143 -0.5261 8 6 0.8080 -4.5876 -1.6909 9 9 0.4165 -5.8692 -1.8621 10 6 1.5362 -3.9488 -2.6801 11 6 1.9382 -2.6386 -2.5059 12 6 2.0323 -0.7103 1.2305 13 8 2.7297 -1.6965 1.1192 14 7 1.7067 -0.2498 2.4546 15 6 2.1749 -0.9128 3.6026 16 6 2.9868 -2.0611 3.6227 17 7 3.2196 -2.3804 4.8708 18 7 2.5598 -1.4586 5.6935 19 6 2.5580 -1.4571 7.0667 20 1 2.0173 -0.6929 7.6051 21 6 3.2568 -2.4357 7.7637 22 7 3.9142 -3.3649 7.1091 23 14 3.2607 -2.4291 9.6316 24 1 2.4511 -1.2859 10.1243 25 1 2.6789 -3.7004 10.1323 26 1 4.6556 -2.2956 10.1233 27 6 1.9247 -0.5581 4.8881 28 1 -0.3634 0.3957 0.9484 29 1 -0.3634 0.6235 -0.8170 30 1 -0.3633 -1.0192 -0.1316 31 1 3.1265 1.4438 -0.0860 32 1 1.6082 1.9806 -0.8440 33 1 1.7484 1.9310 0.9298 34 1 0.6341 -2.0818 0.5631 35 1 -0.0866 -4.4138 0.2449 36 1 1.7909 -4.4753 -3.5881 37 1 2.5066 -2.1408 -3.2776 38 1 1.1487 0.5386 2.5435 39 1 3.3595 -2.5867 2.7560 40 1 4.4015 -4.0481 7.5955 41 1 1.3304 0.2825 5.2145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139525543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:51 Heat of formation + Delta-G solvation = -8.797379 kcal Electronic energy + Delta-G solvation = -28526.003274 eV Core-core repulsion = 24323.019230 eV Total energy + Delta-G solvation = -4202.984044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.04 seconds Orbital eigenvalues (eV) -49.84808 -42.54074 -41.42331 -39.77361 -38.24393 -36.07477 -35.28777 -34.10935 -32.26198 -32.16297 -30.49240 -29.55536 -28.30833 -26.93351 -25.04327 -23.92905 -23.58637 -22.84160 -21.60726 -21.05816 -19.62235 -19.08647 -18.66931 -17.77812 -17.57083 -17.39964 -16.87208 -16.60673 -16.47964 -16.13269 -15.60268 -15.53540 -15.46485 -15.05150 -14.88093 -14.81136 -14.32639 -14.16434 -13.80661 -13.54256 -13.43277 -13.37289 -13.21584 -13.12452 -12.97067 -12.94319 -12.83661 -12.64823 -12.03522 -11.98047 -11.90021 -11.69827 -11.04542 -10.83355 -10.60139 -10.12010 -10.10643 -9.03610 -8.55196 -8.47997 -6.25635 0.17701 0.19638 1.15319 1.39521 1.43816 1.58462 1.83060 1.89272 2.06666 2.21246 2.47935 2.56275 2.86413 3.08570 3.31130 3.61816 3.64609 3.66983 3.75878 3.81599 4.12745 4.27479 4.41997 4.43421 4.56922 4.59806 4.65332 4.74490 4.80315 4.89854 4.99375 5.04582 5.10489 5.12007 5.12585 5.14331 5.27324 5.28243 5.41186 5.67053 5.94939 6.21637 6.30422 6.65680 6.72668 7.28668 7.45770 7.67121 8.51430 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.003106 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.616103 B = 9011.379231 C =10335.742317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.105 3.895 3 C -0.135 4.135 4 O -0.291 6.291 5 C 0.122 3.878 6 C -0.162 4.162 7 C -0.134 4.134 8 C 0.041 3.959 9 F -0.150 7.150 10 C -0.112 4.112 11 C -0.126 4.126 12 C 0.471 3.529 13 O -0.559 6.559 14 N -0.605 5.605 15 C -0.044 4.044 16 C -0.058 4.058 17 N -0.312 5.312 18 N -0.168 5.168 19 C -0.353 4.353 20 H 0.143 0.857 21 C -0.007 4.007 22 N -0.826 5.826 23 Si 1.018 2.982 24 H -0.239 1.239 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.077 4.077 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.169 0.831 37 H 0.165 0.835 38 H 0.420 0.580 39 H 0.162 0.838 40 H 0.275 0.725 41 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.571 10.337 -15.178 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.064 3.936 3 C -0.192 4.192 4 O -0.203 6.203 5 C 0.077 3.923 6 C -0.180 4.180 7 C -0.153 4.153 8 C 0.022 3.978 9 F -0.129 7.129 10 C -0.131 4.131 11 C -0.144 4.144 12 C 0.258 3.742 13 O -0.437 6.437 14 N -0.251 5.251 15 C -0.150 4.150 16 C -0.233 4.233 17 N -0.144 5.144 18 N 0.063 4.937 19 C -0.484 4.484 20 H 0.160 0.840 21 C -0.218 4.218 22 N -0.454 5.454 23 Si 0.837 3.163 24 H -0.161 1.161 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.227 4.227 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.187 0.813 37 H 0.182 0.818 38 H 0.258 0.742 39 H 0.179 0.821 40 H 0.085 0.915 41 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -8.261 8.733 -14.597 18.910 hybrid contribution -0.379 -0.104 0.623 0.736 sum -8.639 8.629 -13.975 18.558 Atomic orbital electron populations 1.22884 0.90361 1.05184 1.06632 1.22015 0.96766 0.94037 0.80828 1.21943 1.02544 0.88464 1.06267 1.86167 1.69986 1.22361 1.41832 1.19052 0.94341 0.84538 0.94386 1.21382 1.01733 0.95744 0.99159 1.21056 1.02031 0.95047 0.97187 1.17749 1.03190 0.79828 0.97062 1.91452 1.89694 1.35910 1.95822 1.21167 0.97701 0.94605 0.99581 1.20527 1.03288 0.93930 0.96701 1.21740 0.81503 0.85335 0.85655 1.90703 1.39157 1.27573 1.86275 1.42420 1.50410 1.29957 1.02362 1.17279 1.11090 1.00346 0.86302 1.24091 1.04280 0.99414 0.95528 1.78178 1.20996 1.15364 0.99860 1.44847 1.27678 1.15376 1.05753 1.20669 1.34736 1.16003 0.76982 0.83977 1.26877 0.94029 0.93935 1.06994 1.70413 1.24504 1.11684 1.38797 0.84544 0.78853 0.79589 0.73269 1.16123 1.19920 1.19914 1.22026 1.09928 1.01831 0.88917 0.88153 0.87325 0.91236 0.92053 0.87367 0.87619 0.85091 0.84908 0.81334 0.81778 0.74158 0.82148 0.91502 0.79208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.07 8.09 71.98 0.58 -2.48 16 2 C 0.11 2.33 0.96 -11.54 -0.01 2.32 16 3 C -0.14 -2.01 8.78 71.99 0.63 -1.38 16 4 O -0.29 -7.64 9.62 -73.96 -0.71 -8.35 16 5 C 0.12 3.42 5.56 22.49 0.13 3.55 16 6 C -0.16 -4.93 5.59 22.36 0.13 -4.80 16 7 C -0.13 -4.06 10.02 22.30 0.22 -3.83 16 8 C 0.04 1.15 7.30 22.37 0.16 1.31 16 9 F -0.15 -4.30 17.27 44.97 0.78 -3.53 16 10 C -0.11 -2.57 10.02 22.30 0.22 -2.35 16 11 C -0.13 -2.96 9.98 22.36 0.22 -2.74 16 12 C 0.47 15.17 4.56 87.66 0.40 15.57 16 13 O -0.56 -23.82 11.07 15.94 0.18 -23.64 16 14 N -0.60 -18.84 5.17 -303.93 -1.57 -20.41 16 15 C -0.04 -1.93 6.90 37.73 0.26 -1.67 16 16 C -0.06 -3.13 10.85 85.42 0.93 -2.20 16 17 N -0.31 -18.77 10.40 -56.47 -0.59 -19.35 16 18 N -0.17 -9.14 3.74 -190.02 -0.71 -9.85 16 19 C -0.35 -18.39 10.25 84.01 0.86 -17.53 16 20 H 0.14 6.36 7.83 -2.91 -0.02 6.34 16 21 C -0.01 -0.36 5.50 84.95 0.47 0.11 16 22 N -0.83 -47.87 11.81 21.66 0.26 -47.61 16 23 Si 1.02 38.34 29.55 68.60 2.03 40.36 16 24 H -0.24 -7.94 7.11 99.48 0.71 -7.23 16 25 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 26 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 27 C -0.08 -3.39 11.49 83.38 0.96 -2.43 16 28 H 0.10 1.17 7.37 -2.39 -0.02 1.15 16 29 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.07 1.37 4.68 -2.39 -0.01 1.36 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.11 1.10 7.43 -2.39 -0.02 1.08 16 34 H 0.13 4.15 3.78 -2.91 -0.01 4.14 16 35 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 36 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 37 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.42 8.82 7.53 -92.71 -0.70 8.12 16 39 H 0.16 8.96 5.92 -2.91 -0.02 8.94 16 40 H 0.28 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.19 6.40 8.06 -2.91 -0.02 6.38 16 Total: -1.00 -79.30 345.30 6.22 -73.08 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: 0.40 Total: 37.86 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 6.16 Total: -18.55 kcal Atomic # 7 Polarization: -94.61 SS G_CDS: -2.61 Total: -97.22 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.54 Total: -32.00 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.78 Total: -3.53 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.36 kcal Total: -79.30 6.22 -73.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139525543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.283 kcal (2) G-P(sol) polarization free energy of solvation -79.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.04 seconds