Wall clock time and date at job start Tue Mar 31 2020 18:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 N 1.46904 * 109.47027 * 240.00552 * 2 1 3 13 13 C 1.46900 * 110.99842 * 306.04472 * 12 2 1 14 14 C 1.46899 * 111.00128 * 70.00022 * 12 2 1 15 15 C 1.50704 * 109.47089 * 169.99927 * 14 12 2 16 16 O 1.21263 * 119.99793 * 0.02562 * 15 14 12 17 17 N 1.34771 * 119.99570 * 179.97438 * 15 14 12 18 18 C 1.46501 * 120.00561 * 0.02562 * 17 15 14 19 19 C 1.38548 * 119.99526 * 180.02562 * 17 15 14 20 20 N 1.28785 * 124.81653 * 359.70161 * 19 17 15 21 21 C 1.34745 * 117.92188 * 179.77092 * 20 19 17 22 22 C 1.41122 * 128.75235 * 180.21121 * 21 20 19 23 23 C 1.37172 * 120.43222 * 180.32891 * 22 21 20 24 24 C 1.38739 * 120.60753 * 359.97438 * 23 22 21 25 25 C 1.37683 * 119.98593 * 0.02562 * 24 23 22 26 26 C 1.39287 * 120.19994 * 0.02562 * 25 24 23 27 27 S 1.75811 * 124.81168 * 180.02562 * 19 17 15 28 28 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 29 29 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 31 31 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.46886 * 60.00102 * 13 12 2 33 33 H 1.09003 * 109.47182 * 180.02562 * 13 12 2 34 34 H 1.08997 * 109.47165 * 299.99892 * 13 12 2 35 35 H 1.09003 * 109.47253 * 290.00141 * 14 12 2 36 36 H 1.08996 * 109.47059 * 50.00124 * 14 12 2 37 37 H 1.08999 * 109.46873 * 90.00101 * 18 17 15 38 38 H 1.08996 * 109.46976 * 209.99767 * 18 17 15 39 39 H 1.08996 * 109.47178 * 330.00435 * 18 17 15 40 40 H 1.08004 * 119.78848 * 0.30561 * 22 21 20 41 41 H 1.08005 * 119.69428 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.00209 * 180.02562 * 24 23 22 43 43 H 1.08005 * 119.89702 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 7 2.0196 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3080 14 6 1.7529 0.0974 -2.4091 15 6 2.4774 -0.5160 -3.5795 16 8 3.1493 -1.5131 -3.4217 17 7 2.3777 0.0430 -4.8018 18 6 1.5656 1.2473 -4.9925 19 6 3.0434 -0.5213 -5.8779 20 7 3.7846 -1.5725 -5.8148 21 6 4.3641 -2.0051 -6.9518 22 6 5.2068 -3.1205 -7.1448 23 6 5.7126 -3.4023 -8.3884 24 6 5.4043 -2.5972 -9.4754 25 6 4.5841 -1.5035 -9.3110 26 6 4.0623 -1.2015 -8.0554 27 16 3.0025 0.1011 -7.5217 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8912 -0.5369 4.4374 32 1 0.3489 -1.9547 -1.3695 33 1 1.8139 -2.5259 -2.2043 34 1 1.7059 -2.6220 -0.4305 35 1 0.6813 0.1055 -2.6088 36 1 2.1025 1.1190 -2.2603 37 1 2.1848 2.1311 -4.8391 38 1 1.1628 1.2572 -6.0053 39 1 0.7451 1.2496 -4.2751 40 1 5.4555 -3.7563 -6.3079 41 1 6.3561 -4.2593 -8.5226 42 1 5.8075 -2.8283 -10.4502 43 1 4.3454 -0.8775 -10.1582 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161736503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:10 Heat of formation + Delta-G solvation = 70.262695 kcal Electronic energy + Delta-G solvation = -25853.903557 eV Core-core repulsion = 22220.560991 eV Total energy + Delta-G solvation = -3633.342565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.81698 -39.85920 -37.57080 -36.52160 -35.54384 -32.65536 -31.25270 -30.43296 -29.66539 -27.93371 -27.21333 -25.37007 -25.12589 -23.95273 -22.86977 -22.04706 -19.68013 -18.99949 -18.77416 -17.45373 -16.91069 -16.57939 -16.40386 -15.98211 -15.51888 -14.92335 -14.76502 -14.73405 -14.31853 -14.04109 -13.96739 -13.75885 -13.33976 -13.09759 -12.88230 -12.67425 -12.58812 -12.26772 -12.21119 -12.12432 -11.57293 -11.26401 -11.15609 -11.10010 -10.95579 -10.50698 -10.32537 -10.12461 -10.07074 -9.95520 -9.58313 -9.26852 -9.05265 -8.60220 -8.39952 -8.17161 -7.42743 -6.06913 -4.05443 0.28421 0.67987 0.91821 1.36256 2.11593 2.34948 2.82066 3.22276 3.30342 3.35609 3.54329 3.95672 4.36717 4.42821 4.53688 4.61998 4.71262 4.77887 4.92133 4.96246 5.11800 5.19497 5.23050 5.26373 5.46927 5.51283 5.65703 5.78308 5.91915 6.01328 6.11955 6.15634 6.19244 6.22514 6.27894 6.43393 6.45304 6.65793 6.77574 6.94359 7.11780 7.55149 7.62573 7.83873 7.93546 8.15928 8.62970 9.03463 9.53672 11.06301 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.026187 B = 0.002602 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.977137 B =10758.583333 C =11557.783462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.183 3.817 3 H 0.041 0.959 4 C -0.500 4.500 5 H 0.084 0.916 6 C 0.069 3.931 7 N -0.898 5.898 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.296 1.296 11 H -0.269 1.269 12 N -0.507 5.507 13 C 0.027 3.973 14 C 0.042 3.958 15 C 0.505 3.495 16 O -0.437 6.437 17 N -0.534 5.534 18 C 0.067 3.933 19 C 0.354 3.646 20 N -0.474 5.474 21 C 0.117 3.883 22 C -0.072 4.072 23 C -0.103 4.103 24 C -0.116 4.116 25 C -0.066 4.066 26 C -0.186 4.186 27 S 0.045 5.955 28 H 0.026 0.974 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.015 0.985 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.012 3.321 -27.878 28.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.076 3.924 3 H 0.058 0.942 4 C -0.539 4.539 5 H 0.102 0.898 6 C -0.133 4.133 7 N -0.536 5.536 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.230 5.230 13 C -0.121 4.121 14 C -0.090 4.090 15 C 0.290 3.710 16 O -0.300 6.300 17 N -0.266 5.266 18 C -0.076 4.076 19 C -0.020 4.020 20 N -0.195 5.195 21 C -0.003 4.003 22 C -0.093 4.093 23 C -0.124 4.124 24 C -0.137 4.137 25 C -0.089 4.089 26 C -0.305 4.305 27 S 0.295 5.705 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.393 3.332 -27.300 27.506 hybrid contribution -1.159 0.433 0.089 1.240 sum -0.766 3.765 -27.211 27.481 Atomic orbital electron populations 1.22869 1.01582 1.01373 0.98922 1.19849 0.88743 0.95236 0.88610 0.94163 1.20899 1.31452 1.13984 0.87522 0.89798 1.24921 0.95955 0.96589 0.95788 1.69879 1.45680 1.40204 0.97866 0.86892 0.80521 0.83906 0.76973 1.20781 1.22381 1.19387 1.61930 1.59021 1.02400 0.99648 1.22450 0.95486 0.90901 1.03239 1.22033 0.97602 0.99252 0.90158 1.21516 0.82422 0.84833 0.82194 1.90794 1.35254 1.22325 1.81677 1.45633 1.46742 1.28429 1.05819 1.22194 0.95829 0.85493 1.04035 1.24097 0.94762 0.92383 0.90792 1.66447 1.12739 1.13026 1.27258 1.19052 0.98803 0.97059 0.85425 1.20752 0.95480 0.94889 0.98150 1.20959 0.99641 0.99853 0.91917 1.21051 0.98522 0.94853 0.99281 1.20250 0.97120 0.97739 0.93823 1.23539 1.06556 1.00846 0.99592 1.84713 1.51588 1.30427 1.03788 0.95450 0.92127 0.93437 0.92594 0.96636 0.91859 0.90007 0.92174 0.87888 0.90283 0.90242 0.88347 0.84563 0.84806 0.84919 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.88 7.92 37.16 0.29 -3.58 16 2 C 0.18 4.19 1.90 -68.86 -0.13 4.06 16 3 H 0.04 0.93 7.00 -51.93 -0.36 0.57 16 4 C -0.50 -13.94 8.55 -34.44 -0.29 -14.23 16 5 H 0.08 2.61 7.35 -52.49 -0.39 2.22 16 6 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 7 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 8 Si 0.89 21.33 24.37 -169.99 -4.14 17.19 16 9 H -0.28 -6.58 6.86 56.52 0.39 -6.19 16 10 H -0.30 -7.21 7.11 56.52 0.40 -6.80 16 11 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 12 N -0.51 -10.62 4.44 -237.72 -1.06 -11.67 16 13 C 0.03 0.55 8.46 60.06 0.51 1.06 16 14 C 0.04 0.66 3.57 -4.97 -0.02 0.65 16 15 C 0.51 8.41 7.33 -10.99 -0.08 8.33 16 16 O -0.44 -9.15 12.95 5.57 0.07 -9.08 16 17 N -0.53 -7.06 3.06 -123.72 -0.38 -7.44 16 18 C 0.07 0.52 9.94 59.85 0.59 1.12 16 19 C 0.35 5.08 7.81 -88.47 -0.69 4.39 16 20 N -0.47 -8.01 8.63 -11.05 -0.10 -8.11 16 21 C 0.12 1.68 6.94 -84.90 -0.59 1.09 16 22 C -0.07 -0.86 10.10 -38.88 -0.39 -1.25 16 23 C -0.10 -0.89 9.99 -39.78 -0.40 -1.29 16 24 C -0.12 -0.90 10.05 -39.60 -0.40 -1.30 16 25 C -0.07 -0.60 10.06 -39.39 -0.40 -1.00 16 26 C -0.19 -2.23 6.52 -38.60 -0.25 -2.48 16 27 S 0.04 0.48 21.91 -107.50 -2.36 -1.88 16 28 H 0.03 0.46 6.91 -51.93 -0.36 0.10 16 29 H 0.06 1.25 6.33 -51.93 -0.33 0.92 16 30 H 0.05 1.03 3.25 -51.93 -0.17 0.86 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.02 0.29 6.21 -51.93 -0.32 -0.04 16 33 H 0.06 1.28 5.82 -51.93 -0.30 0.98 16 34 H 0.08 1.85 6.86 -51.93 -0.36 1.49 16 35 H 0.06 0.82 6.32 -51.93 -0.33 0.49 16 36 H 0.10 1.44 7.90 -51.93 -0.41 1.03 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.48 7.05 -51.93 -0.37 0.12 16 39 H 0.10 0.63 6.44 -51.93 -0.33 0.29 16 40 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 43 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -35.52 350.52 -9.56 -45.08 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.32 Total: -0.25 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.34 Total: -2.56 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.76 Total: -53.79 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.07 Total: -9.08 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.14 Total: 17.19 kcal Atomic # 16 Polarization: 0.48 SS G_CDS: -2.36 Total: -1.88 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.52 -9.56 -45.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161736503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.347 kcal (2) G-P(sol) polarization free energy of solvation -35.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds