Wall clock time and date at job start Tue Mar 31 2020 18:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 N 1.46904 * 109.47027 * 240.00552 * 2 1 3 13 13 C 1.46900 * 110.99842 * 306.04472 * 12 2 1 14 14 C 1.46899 * 111.00128 * 70.00022 * 12 2 1 15 15 C 1.50704 * 109.47089 * 169.99927 * 14 12 2 16 16 O 1.21263 * 119.99793 * 0.02562 * 15 14 12 17 17 N 1.34771 * 119.99570 * 179.97438 * 15 14 12 18 18 C 1.46501 * 120.00561 * 0.02562 * 17 15 14 19 19 C 1.38548 * 119.99526 * 180.02562 * 17 15 14 20 20 N 1.28785 * 124.81653 * 359.70161 * 19 17 15 21 21 C 1.34745 * 117.92188 * 179.77092 * 20 19 17 22 22 C 1.41122 * 128.75235 * 180.21121 * 21 20 19 23 23 C 1.37172 * 120.43222 * 180.32891 * 22 21 20 24 24 C 1.38739 * 120.60753 * 359.97438 * 23 22 21 25 25 C 1.37683 * 119.98593 * 0.02562 * 24 23 22 26 26 C 1.39287 * 120.19994 * 0.02562 * 25 24 23 27 27 S 1.75811 * 124.81168 * 180.02562 * 19 17 15 28 28 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 29 29 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 31 31 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.46886 * 60.00102 * 13 12 2 33 33 H 1.09003 * 109.47182 * 180.02562 * 13 12 2 34 34 H 1.08997 * 109.47165 * 299.99892 * 13 12 2 35 35 H 1.09003 * 109.47253 * 290.00141 * 14 12 2 36 36 H 1.08996 * 109.47059 * 50.00124 * 14 12 2 37 37 H 1.08999 * 109.46873 * 90.00101 * 18 17 15 38 38 H 1.08996 * 109.46976 * 209.99767 * 18 17 15 39 39 H 1.08996 * 109.47178 * 330.00435 * 18 17 15 40 40 H 1.08004 * 119.78848 * 0.30561 * 22 21 20 41 41 H 1.08005 * 119.69428 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.00209 * 180.02562 * 24 23 22 43 43 H 1.08005 * 119.89702 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 7 2.0196 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3080 14 6 1.7529 0.0974 -2.4091 15 6 2.4774 -0.5160 -3.5795 16 8 3.1493 -1.5131 -3.4217 17 7 2.3777 0.0430 -4.8018 18 6 1.5656 1.2473 -4.9925 19 6 3.0434 -0.5213 -5.8779 20 7 3.7846 -1.5725 -5.8148 21 6 4.3641 -2.0051 -6.9518 22 6 5.2068 -3.1205 -7.1448 23 6 5.7126 -3.4023 -8.3884 24 6 5.4043 -2.5972 -9.4754 25 6 4.5841 -1.5035 -9.3110 26 6 4.0623 -1.2015 -8.0554 27 16 3.0025 0.1011 -7.5217 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8912 -0.5369 4.4374 32 1 0.3489 -1.9547 -1.3695 33 1 1.8139 -2.5259 -2.2043 34 1 1.7059 -2.6220 -0.4305 35 1 0.6813 0.1055 -2.6088 36 1 2.1025 1.1190 -2.2603 37 1 2.1848 2.1311 -4.8391 38 1 1.1628 1.2572 -6.0053 39 1 0.7451 1.2496 -4.2751 40 1 5.4555 -3.7563 -6.3079 41 1 6.3561 -4.2593 -8.5226 42 1 5.8075 -2.8283 -10.4502 43 1 4.3454 -0.8775 -10.1582 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161736503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:09 Heat of formation + Delta-G solvation = 44.706345 kcal Electronic energy + Delta-G solvation = -25855.011763 eV Core-core repulsion = 22220.560991 eV Total energy + Delta-G solvation = -3634.450772 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.86006 -40.84088 -38.95061 -37.71788 -36.52873 -34.68472 -32.01084 -32.00232 -30.72218 -29.27942 -27.95328 -27.21762 -26.54638 -25.15097 -23.82314 -22.97642 -21.27853 -20.17588 -19.62537 -18.68751 -18.51574 -17.79539 -17.44041 -17.14484 -16.49279 -16.31060 -16.02758 -15.94033 -15.56111 -15.29077 -15.10212 -14.78933 -14.64799 -14.31420 -14.15523 -13.99349 -13.67958 -13.38299 -13.24220 -13.08907 -12.99576 -12.79654 -12.76377 -12.58396 -12.18408 -11.93221 -11.88843 -11.41152 -11.29633 -11.13963 -11.09360 -10.91381 -10.73903 -10.32185 -9.18572 -9.07272 -8.97326 -8.24827 -6.29326 -0.60108 -0.21587 0.15347 0.49357 1.15460 1.33212 1.39536 1.46820 1.50612 1.75175 2.35349 2.72724 2.93481 3.08976 3.28183 3.55717 3.68650 4.01426 4.09957 4.20018 4.27473 4.31127 4.34595 4.40695 4.46835 4.51991 4.58056 4.59337 4.64888 4.72914 4.77614 4.90432 4.97852 5.00886 5.18864 5.21352 5.29771 5.42922 5.44234 5.62180 5.66490 5.84797 6.02606 6.28357 6.64061 6.72305 6.77549 7.00706 7.34879 8.92961 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.026187 B = 0.002602 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.977137 B =10758.583333 C =11557.783462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.188 3.812 3 H 0.049 0.951 4 C -0.507 4.507 5 H 0.025 0.975 6 C 0.004 3.996 7 N -0.955 5.955 8 Si 0.959 3.041 9 H -0.266 1.266 10 H -0.303 1.303 11 H -0.234 1.234 12 N -0.537 5.537 13 C 0.043 3.957 14 C 0.045 3.955 15 C 0.505 3.495 16 O -0.498 6.498 17 N -0.530 5.530 18 C 0.053 3.947 19 C 0.320 3.680 20 N -0.526 5.526 21 C 0.074 3.926 22 C -0.102 4.102 23 C -0.093 4.093 24 C -0.102 4.102 25 C -0.068 4.068 26 C -0.207 4.207 27 S 0.117 5.883 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.265 0.735 32 H 0.037 0.963 33 H 0.059 0.941 34 H 0.041 0.959 35 H 0.098 0.902 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.164 0.836 42 H 0.175 0.825 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 6.505 -32.168 32.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.080 3.920 3 H 0.067 0.933 4 C -0.546 4.546 5 H 0.044 0.956 6 C -0.192 4.192 7 N -0.596 5.596 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.231 1.231 11 H -0.157 1.157 12 N -0.261 5.261 13 C -0.106 4.106 14 C -0.087 4.087 15 C 0.292 3.708 16 O -0.367 6.367 17 N -0.262 5.262 18 C -0.086 4.086 19 C -0.053 4.053 20 N -0.248 5.248 21 C -0.045 4.045 22 C -0.123 4.123 23 C -0.113 4.113 24 C -0.123 4.123 25 C -0.091 4.091 26 C -0.326 4.326 27 S 0.367 5.633 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.115 0.885 36 H 0.147 0.853 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.182 0.818 42 H 0.193 0.807 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.449 6.557 -31.671 32.375 hybrid contribution -0.428 -0.685 1.206 1.452 sum -1.878 5.872 -30.465 31.082 Atomic orbital electron populations 1.22728 0.99010 1.01585 1.00916 1.19639 0.90569 0.94601 0.87153 0.93286 1.21179 1.30418 1.12515 0.90446 0.95631 1.25925 0.97695 1.00548 0.95036 1.70078 1.48091 1.42806 0.98639 0.85724 0.78614 0.79463 0.77722 1.19215 1.23105 1.15676 1.61650 1.60246 1.02873 1.01335 1.22200 0.96551 0.90786 1.01014 1.22142 0.99737 0.99222 0.87566 1.21658 0.81594 0.84114 0.83479 1.90778 1.37923 1.24996 1.82969 1.45612 1.46648 1.29259 1.04655 1.22649 0.96180 0.83901 1.05912 1.24419 0.95213 0.92891 0.92766 1.66401 1.13937 1.14777 1.29697 1.19338 1.00532 0.98764 0.85867 1.20934 0.96829 0.95071 0.99447 1.21360 0.98656 1.00525 0.90767 1.21589 0.96801 0.93372 1.00512 1.20743 0.96515 0.98406 0.93463 1.23959 1.07256 1.01232 1.00127 1.84211 1.50474 1.28769 0.99833 0.90524 0.93000 0.94090 0.92626 0.94492 0.92251 0.94051 0.88471 0.85279 0.88333 0.88422 0.86279 0.86121 0.81840 0.80742 0.82366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.94 7.92 71.98 0.57 -6.37 16 2 C 0.19 8.42 1.90 44.17 0.08 8.50 16 3 H 0.05 2.13 7.00 -2.38 -0.02 2.11 16 4 C -0.51 -29.44 8.55 25.60 0.22 -29.22 16 5 H 0.03 1.73 7.35 -2.91 -0.02 1.70 16 6 C 0.00 0.24 5.45 84.65 0.46 0.70 16 7 N -0.96 -61.02 13.96 21.45 0.30 -60.72 16 8 Si 0.96 43.39 24.37 68.60 1.67 45.06 16 9 H -0.27 -11.36 6.86 99.48 0.68 -10.68 16 10 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 11 H -0.23 -9.19 6.54 99.48 0.65 -8.54 16 12 N -0.54 -22.56 4.44 -906.01 -4.02 -26.58 16 13 C 0.04 1.80 8.46 127.69 1.08 2.88 16 14 C 0.04 1.31 3.57 85.56 0.31 1.62 16 15 C 0.51 16.77 7.33 87.66 0.64 17.41 16 16 O -0.50 -22.09 12.95 -2.98 -0.04 -22.13 16 17 N -0.53 -13.42 3.06 -663.73 -2.03 -15.45 16 18 C 0.05 0.65 9.94 127.77 1.27 1.92 16 19 C 0.32 9.20 7.81 179.60 1.40 10.60 16 20 N -0.53 -18.78 8.63 -188.86 -1.63 -20.41 16 21 C 0.07 2.21 6.94 39.79 0.28 2.48 16 22 C -0.10 -2.55 10.10 22.73 0.23 -2.32 16 23 C -0.09 -1.46 9.99 22.14 0.22 -1.24 16 24 C -0.10 -1.22 10.05 22.26 0.22 -1.00 16 25 C -0.07 -1.03 10.06 22.39 0.23 -0.81 16 26 C -0.21 -4.70 6.52 22.90 0.15 -4.55 16 27 S 0.12 2.26 21.91 -56.49 -1.24 1.03 16 28 H 0.08 2.14 6.91 -2.38 -0.02 2.13 16 29 H 0.05 2.03 6.33 -2.39 -0.02 2.01 16 30 H 0.04 1.61 3.25 -2.38 -0.01 1.60 16 31 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 32 H 0.04 1.37 6.21 -2.38 -0.01 1.35 16 33 H 0.06 2.55 5.82 -2.39 -0.01 2.54 16 34 H 0.04 2.03 6.86 -2.39 -0.02 2.01 16 35 H 0.10 2.17 6.32 -2.39 -0.02 2.15 16 36 H 0.13 3.12 7.90 -2.39 -0.02 3.10 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.10 0.82 7.05 -2.39 -0.02 0.80 16 39 H 0.12 0.94 6.44 -2.39 -0.02 0.92 16 40 H 0.12 3.20 8.06 -2.91 -0.02 3.17 16 41 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 42 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 43 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -87.49 350.52 1.34 -86.15 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.97 Total: 12.43 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 7.36 Total: 0.62 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -7.39 Total: -123.16 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.04 Total: -22.13 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.67 Total: 45.06 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.24 Total: 1.03 kcal Total: -87.49 1.34 -86.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161736503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.861 kcal (2) G-P(sol) polarization free energy of solvation -87.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds