Wall clock time and date at job start Tue Mar 31 2020 18:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47743 * 2 1 4 4 C 1.50694 * 109.47215 * 239.99824 * 2 1 3 5 5 H 1.08009 * 119.99866 * 245.35849 * 4 2 1 6 6 C 1.37876 * 120.00332 * 65.36196 * 4 2 1 7 7 N 1.31515 * 120.00128 * 184.92585 * 6 4 2 8 8 Si 1.86804 * 119.99579 * 5.19712 * 6 4 2 9 9 H 1.48498 * 109.46962 * 269.72718 * 8 6 4 10 10 H 1.48489 * 109.47324 * 29.72751 * 8 6 4 11 11 H 1.48506 * 109.46838 * 149.73060 * 8 6 4 12 12 N 1.46900 * 109.47104 * 119.99721 * 2 1 3 13 13 C 1.46902 * 110.99776 * 58.95335 * 12 2 1 14 14 C 1.46903 * 111.00055 * 295.00415 * 12 2 1 15 15 C 1.50704 * 109.47219 * 189.99664 * 14 12 2 16 16 O 1.21277 * 119.99736 * 0.02562 * 15 14 12 17 17 N 1.34777 * 120.00318 * 179.97438 * 15 14 12 18 18 C 1.46501 * 119.99794 * 0.02562 * 17 15 14 19 19 C 1.38539 * 119.99932 * 180.02562 * 17 15 14 20 20 N 1.28782 * 124.81458 * 359.70100 * 19 17 15 21 21 C 1.34754 * 117.91326 * 179.77264 * 20 19 17 22 22 C 1.41134 * 128.74819 * 180.21084 * 21 20 19 23 23 C 1.37166 * 120.43076 * 180.32391 * 22 21 20 24 24 C 1.38733 * 120.61112 * 359.97438 * 23 22 21 25 25 C 1.37693 * 119.98762 * 359.97438 * 24 23 22 26 26 C 1.39295 * 120.19400 * 0.02562 * 25 24 23 27 27 S 1.75811 * 124.80935 * 179.97438 * 19 17 15 28 28 H 1.08994 * 109.47526 * 174.89098 * 1 2 3 29 29 H 1.09000 * 109.47839 * 294.89706 * 1 2 3 30 30 H 1.09003 * 109.46954 * 54.89477 * 1 2 3 31 31 H 0.96993 * 119.99870 * 355.26522 * 7 6 4 32 32 H 1.08995 * 109.47277 * 60.00398 * 13 12 2 33 33 H 1.09008 * 109.47313 * 180.02562 * 13 12 2 34 34 H 1.08997 * 109.47116 * 300.00060 * 13 12 2 35 35 H 1.09000 * 109.46604 * 309.99517 * 14 12 2 36 36 H 1.08996 * 109.47211 * 69.99887 * 14 12 2 37 37 H 1.08999 * 109.47042 * 89.99782 * 18 17 15 38 38 H 1.08998 * 109.47368 * 209.99994 * 18 17 15 39 39 H 1.09008 * 109.46982 * 329.99863 * 18 17 15 40 40 H 1.08000 * 119.78157 * 0.30928 * 22 21 20 41 41 H 1.08006 * 119.69526 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.00679 * 180.02562 * 24 23 22 43 43 H 1.07997 * 119.90376 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5800 -1.6363 -1.1336 6 6 1.7928 -0.1785 -2.4797 7 7 2.1454 -0.8455 -3.5569 8 14 0.9744 1.4928 -2.6419 9 1 -0.4985 1.3179 -2.7135 10 1 1.3169 2.3282 -1.4630 11 1 1.4542 2.1610 -3.8783 12 7 2.0196 -0.6924 1.1995 13 6 1.5282 -2.0760 1.2460 14 6 1.6485 0.0392 2.4181 15 6 2.3677 -0.5570 3.6007 16 8 3.1159 -1.4984 3.4436 17 7 2.1800 -0.0435 4.8325 18 6 1.2765 1.0940 5.0221 19 6 2.8416 -0.5914 5.9195 20 7 3.6499 -1.5922 5.8602 21 6 4.2223 -2.0095 7.0066 22 6 5.1347 -3.0680 7.2040 23 6 5.6093 -3.3510 8.4595 24 6 5.2015 -2.6027 9.5542 25 6 4.3128 -1.5646 9.3856 26 6 3.8204 -1.2627 8.1181 27 16 2.6913 -0.0232 7.5765 28 1 -0.3634 -1.0235 -0.0915 29 1 -0.3635 0.4326 0.9321 30 1 -0.3633 0.5910 -0.8408 31 1 2.6349 -1.6785 -3.4730 32 1 1.8761 -2.6150 0.3649 33 1 1.9051 -2.5655 2.1441 34 1 0.4384 -2.0741 1.2640 35 1 1.9296 1.0871 2.3124 36 1 0.5721 -0.0345 2.5726 37 1 0.2688 0.7286 5.2196 38 1 1.6181 1.6926 5.8666 39 1 1.2705 1.7073 4.1209 40 1 5.4612 -3.6590 6.3611 41 1 6.3075 -4.1635 8.5969 42 1 5.5817 -2.8338 10.5383 43 1 3.9966 -0.9826 10.2387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161736645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:14 Heat of formation + Delta-G solvation = 61.761316 kcal Electronic energy + Delta-G solvation = -25867.867367 eV Core-core repulsion = 22234.156154 eV Total energy + Delta-G solvation = -3633.711213 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.82913 -39.87042 -37.56486 -36.51832 -35.55613 -32.70732 -31.26659 -30.34213 -29.59793 -27.98829 -27.22651 -25.20008 -24.96199 -23.84905 -22.82134 -22.02452 -19.58181 -18.96175 -18.78095 -17.53518 -17.24827 -16.87300 -16.41577 -15.95976 -15.53494 -14.90647 -14.76733 -14.71489 -14.21108 -14.02145 -14.00662 -13.64043 -13.28829 -13.13912 -12.78500 -12.70200 -12.56054 -12.25777 -12.13978 -11.85744 -11.52841 -11.46899 -11.12225 -11.01944 -10.93183 -10.46276 -10.34016 -10.16925 -10.04413 -9.92106 -9.74589 -9.23854 -8.72271 -8.41401 -8.41016 -8.18697 -7.42642 -6.42713 -4.05576 0.27069 0.66677 0.90412 1.34955 2.10136 2.33908 2.80660 3.32606 3.39289 3.52882 3.54766 3.94653 4.41611 4.46349 4.53445 4.61570 4.70263 4.76689 4.93877 4.94939 5.10358 5.18993 5.24992 5.30474 5.45368 5.51242 5.64325 5.77075 5.90710 6.02989 6.13865 6.14733 6.21821 6.24431 6.28769 6.42286 6.50920 6.66884 6.78700 6.92135 7.16973 7.56751 7.64226 7.92699 8.10351 8.23628 8.45171 8.97291 9.63859 10.98647 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025590 B = 0.002616 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.911641 B =10702.164799 C =11495.649516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.181 3.819 3 H 0.041 0.959 4 C -0.577 4.577 5 H 0.066 0.934 6 C 0.025 3.975 7 N -0.914 5.914 8 Si 1.057 2.943 9 H -0.286 1.286 10 H -0.280 1.280 11 H -0.290 1.290 12 N -0.508 5.508 13 C 0.030 3.970 14 C 0.041 3.959 15 C 0.505 3.495 16 O -0.438 6.438 17 N -0.534 5.534 18 C 0.067 3.933 19 C 0.354 3.646 20 N -0.475 5.475 21 C 0.117 3.883 22 C -0.072 4.072 23 C -0.103 4.103 24 C -0.116 4.116 25 C -0.066 4.066 26 C -0.186 4.186 27 S 0.045 5.955 28 H 0.055 0.945 29 H 0.025 0.975 30 H 0.049 0.951 31 H 0.268 0.732 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.014 0.986 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.635 3.114 28.267 28.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.074 3.926 3 H 0.058 0.942 4 C -0.616 4.616 5 H 0.084 0.916 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.887 3.113 9 H -0.213 1.213 10 H -0.207 1.207 11 H -0.216 1.216 12 N -0.232 5.232 13 C -0.118 4.118 14 C -0.092 4.092 15 C 0.290 3.710 16 O -0.302 6.302 17 N -0.266 5.266 18 C -0.075 4.075 19 C -0.020 4.020 20 N -0.195 5.195 21 C -0.004 4.004 22 C -0.093 4.093 23 C -0.124 4.124 24 C -0.137 4.137 25 C -0.089 4.089 26 C -0.305 4.305 27 S 0.296 5.704 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.813 4.244 26.796 27.143 hybrid contribution 0.093 -1.570 1.248 2.008 sum -0.719 2.674 28.044 28.181 Atomic orbital electron populations 1.22808 1.01539 1.01408 0.98717 1.19913 0.88942 0.95352 0.88388 0.94170 1.22031 1.38953 1.10501 0.90076 0.91571 1.25708 0.96837 1.03438 0.91920 1.70792 1.36944 1.17001 1.30175 0.83841 0.76044 0.75817 0.75614 1.21294 1.20668 1.21629 1.62019 1.59368 1.02217 0.99567 1.22392 0.96259 0.90169 1.02931 1.22049 0.97422 0.99675 0.90019 1.21563 0.82973 0.84087 0.82355 1.90792 1.32420 1.24514 1.82498 1.45639 1.43474 1.32854 1.04646 1.22195 0.93354 0.87284 1.04692 1.24100 0.94335 0.92918 0.90696 1.66453 1.12198 1.13527 1.27355 1.19055 0.98542 0.97554 0.85206 1.20749 0.95253 0.95199 0.98101 1.20955 0.99783 0.99843 0.91779 1.21053 0.97844 0.95541 0.99265 1.20256 0.97104 0.97855 0.93695 1.23540 1.05621 1.02045 0.99336 1.84711 1.47672 1.35725 1.02322 0.92597 0.95583 0.93196 0.92188 0.90364 0.92038 0.96756 0.87973 0.92003 0.90461 0.90171 0.88215 0.84602 0.84807 0.84903 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.80 8.04 37.15 0.30 -3.51 16 2 C 0.18 4.20 1.92 -68.87 -0.13 4.07 16 3 H 0.04 0.94 6.53 -51.93 -0.34 0.60 16 4 C -0.58 -16.09 8.41 -34.44 -0.29 -16.38 16 5 H 0.07 2.03 6.78 -52.48 -0.36 1.68 16 6 C 0.03 0.72 5.43 -17.82 -0.10 0.62 16 7 N -0.91 -28.16 13.70 55.43 0.76 -27.40 16 8 Si 1.06 24.93 25.28 -169.99 -4.30 20.64 16 9 H -0.29 -6.39 6.82 56.52 0.39 -6.00 16 10 H -0.28 -6.03 6.35 56.52 0.36 -5.67 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 N -0.51 -10.85 4.48 -237.73 -1.06 -11.92 16 13 C 0.03 0.64 8.53 60.07 0.51 1.15 16 14 C 0.04 0.66 3.45 -4.97 -0.02 0.64 16 15 C 0.50 8.53 7.33 -10.98 -0.08 8.45 16 16 O -0.44 -9.30 12.95 5.56 0.07 -9.23 16 17 N -0.53 -7.13 3.06 -123.71 -0.38 -7.51 16 18 C 0.07 0.53 9.94 59.85 0.59 1.12 16 19 C 0.35 5.12 7.81 -88.48 -0.69 4.43 16 20 N -0.47 -8.08 8.63 -11.05 -0.10 -8.18 16 21 C 0.12 1.68 6.94 -84.90 -0.59 1.09 16 22 C -0.07 -0.86 10.10 -38.87 -0.39 -1.26 16 23 C -0.10 -0.90 9.99 -39.79 -0.40 -1.29 16 24 C -0.12 -0.90 10.05 -39.60 -0.40 -1.30 16 25 C -0.07 -0.60 10.06 -39.39 -0.40 -1.00 16 26 C -0.19 -2.23 6.52 -38.60 -0.25 -2.49 16 27 S 0.05 0.49 21.91 -107.50 -2.36 -1.87 16 28 H 0.05 1.18 6.68 -51.93 -0.35 0.83 16 29 H 0.03 0.43 6.51 -51.93 -0.34 0.09 16 30 H 0.05 1.04 4.41 -51.93 -0.23 0.81 16 31 H 0.27 8.29 8.72 -40.82 -0.36 7.93 16 32 H 0.08 1.82 6.43 -51.93 -0.33 1.49 16 33 H 0.06 1.28 5.83 -51.92 -0.30 0.98 16 34 H 0.01 0.28 6.40 -51.93 -0.33 -0.06 16 35 H 0.10 1.44 7.26 -51.93 -0.38 1.06 16 36 H 0.06 0.87 6.79 -51.93 -0.35 0.51 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.50 7.05 -51.93 -0.37 0.13 16 39 H 0.10 0.65 6.44 -51.92 -0.33 0.31 16 40 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 41 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 42 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 351.00 15.07 5.29 5.29 Total: -1.00 -35.70 351.00 -9.73 -45.43 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.33 Total: 0.39 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.33 Total: -5.65 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.78 Total: -55.00 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.07 Total: -9.23 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -4.30 Total: 20.64 kcal Atomic # 16 Polarization: 0.49 SS G_CDS: -2.36 Total: -1.87 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.70 -9.73 -45.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161736645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.193 kcal (2) G-P(sol) polarization free energy of solvation -35.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds