Wall clock time and date at job start Tue Mar 31 2020 18:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47743 * 2 1 4 4 C 1.50694 * 109.47215 * 239.99824 * 2 1 3 5 5 H 1.08009 * 119.99866 * 245.35849 * 4 2 1 6 6 C 1.37876 * 120.00332 * 65.36196 * 4 2 1 7 7 N 1.31515 * 120.00128 * 184.92585 * 6 4 2 8 8 Si 1.86804 * 119.99579 * 5.19712 * 6 4 2 9 9 H 1.48498 * 109.46962 * 269.72718 * 8 6 4 10 10 H 1.48489 * 109.47324 * 29.72751 * 8 6 4 11 11 H 1.48506 * 109.46838 * 149.73060 * 8 6 4 12 12 N 1.46900 * 109.47104 * 119.99721 * 2 1 3 13 13 C 1.46902 * 110.99776 * 58.95335 * 12 2 1 14 14 C 1.46903 * 111.00055 * 295.00415 * 12 2 1 15 15 C 1.50704 * 109.47219 * 189.99664 * 14 12 2 16 16 O 1.21277 * 119.99736 * 0.02562 * 15 14 12 17 17 N 1.34777 * 120.00318 * 179.97438 * 15 14 12 18 18 C 1.46501 * 119.99794 * 0.02562 * 17 15 14 19 19 C 1.38539 * 119.99932 * 180.02562 * 17 15 14 20 20 N 1.28782 * 124.81458 * 359.70100 * 19 17 15 21 21 C 1.34754 * 117.91326 * 179.77264 * 20 19 17 22 22 C 1.41134 * 128.74819 * 180.21084 * 21 20 19 23 23 C 1.37166 * 120.43076 * 180.32391 * 22 21 20 24 24 C 1.38733 * 120.61112 * 359.97438 * 23 22 21 25 25 C 1.37693 * 119.98762 * 359.97438 * 24 23 22 26 26 C 1.39295 * 120.19400 * 0.02562 * 25 24 23 27 27 S 1.75811 * 124.80935 * 179.97438 * 19 17 15 28 28 H 1.08994 * 109.47526 * 174.89098 * 1 2 3 29 29 H 1.09000 * 109.47839 * 294.89706 * 1 2 3 30 30 H 1.09003 * 109.46954 * 54.89477 * 1 2 3 31 31 H 0.96993 * 119.99870 * 355.26522 * 7 6 4 32 32 H 1.08995 * 109.47277 * 60.00398 * 13 12 2 33 33 H 1.09008 * 109.47313 * 180.02562 * 13 12 2 34 34 H 1.08997 * 109.47116 * 300.00060 * 13 12 2 35 35 H 1.09000 * 109.46604 * 309.99517 * 14 12 2 36 36 H 1.08996 * 109.47211 * 69.99887 * 14 12 2 37 37 H 1.08999 * 109.47042 * 89.99782 * 18 17 15 38 38 H 1.08998 * 109.47368 * 209.99994 * 18 17 15 39 39 H 1.09008 * 109.46982 * 329.99863 * 18 17 15 40 40 H 1.08000 * 119.78157 * 0.30928 * 22 21 20 41 41 H 1.08006 * 119.69526 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.00679 * 180.02562 * 24 23 22 43 43 H 1.07997 * 119.90376 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5800 -1.6363 -1.1336 6 6 1.7928 -0.1785 -2.4797 7 7 2.1454 -0.8455 -3.5569 8 14 0.9744 1.4928 -2.6419 9 1 -0.4985 1.3179 -2.7135 10 1 1.3169 2.3282 -1.4630 11 1 1.4542 2.1610 -3.8783 12 7 2.0196 -0.6924 1.1995 13 6 1.5282 -2.0760 1.2460 14 6 1.6485 0.0392 2.4181 15 6 2.3677 -0.5570 3.6007 16 8 3.1159 -1.4984 3.4436 17 7 2.1800 -0.0435 4.8325 18 6 1.2765 1.0940 5.0221 19 6 2.8416 -0.5914 5.9195 20 7 3.6499 -1.5922 5.8602 21 6 4.2223 -2.0095 7.0066 22 6 5.1347 -3.0680 7.2040 23 6 5.6093 -3.3510 8.4595 24 6 5.2015 -2.6027 9.5542 25 6 4.3128 -1.5646 9.3856 26 6 3.8204 -1.2627 8.1181 27 16 2.6913 -0.0232 7.5765 28 1 -0.3634 -1.0235 -0.0915 29 1 -0.3635 0.4326 0.9321 30 1 -0.3633 0.5910 -0.8408 31 1 2.6349 -1.6785 -3.4730 32 1 1.8761 -2.6150 0.3649 33 1 1.9051 -2.5655 2.1441 34 1 0.4384 -2.0741 1.2640 35 1 1.9296 1.0871 2.3124 36 1 0.5721 -0.0345 2.5726 37 1 0.2688 0.7286 5.2196 38 1 1.6181 1.6926 5.8666 39 1 1.2705 1.7073 4.1209 40 1 5.4612 -3.6590 6.3611 41 1 6.3075 -4.1635 8.5969 42 1 5.5817 -2.8338 10.5383 43 1 3.9966 -0.9826 10.2387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161736645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:13 Heat of formation + Delta-G solvation = 36.078830 kcal Electronic energy + Delta-G solvation = -25868.981043 eV Core-core repulsion = 22234.156154 eV Total energy + Delta-G solvation = -3634.824889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.88290 -40.86067 -38.96147 -37.73588 -36.54991 -34.77408 -32.02601 -31.84654 -30.73071 -29.36132 -27.97124 -26.89591 -26.49264 -25.08397 -23.80688 -22.97670 -21.21119 -20.18538 -19.64345 -19.41222 -18.52499 -17.79987 -17.47066 -17.08543 -16.47290 -16.23199 -15.97986 -15.92851 -15.44718 -15.25137 -15.16095 -14.81248 -14.52307 -14.29015 -14.07134 -13.87874 -13.70534 -13.40883 -13.30161 -13.16722 -13.06276 -12.81601 -12.62334 -12.57322 -12.15650 -11.92588 -11.73930 -11.54970 -11.28624 -11.15556 -10.93964 -10.83219 -10.57331 -10.34394 -9.20398 -9.09854 -9.01307 -8.70825 -6.34395 -0.61941 -0.23378 0.13697 0.47723 1.13104 1.44703 1.45433 1.57818 1.72597 1.72985 2.53021 2.70996 2.91696 3.12898 3.28021 3.53635 3.66913 4.00298 4.08414 4.19092 4.25014 4.29598 4.32792 4.36731 4.46220 4.52032 4.56018 4.58651 4.69714 4.71882 4.78124 4.88727 4.96360 5.01507 5.14325 5.18798 5.27988 5.41294 5.49000 5.62948 5.75891 5.85474 6.05319 6.19269 6.43640 6.68284 6.71316 6.98026 7.46861 8.68816 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025590 B = 0.002616 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.911641 B =10702.164799 C =11495.649516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.184 3.816 3 H 0.051 0.949 4 C -0.579 4.579 5 H 0.014 0.986 6 C -0.033 4.033 7 N -0.951 5.951 8 Si 1.097 2.903 9 H -0.261 1.261 10 H -0.239 1.239 11 H -0.298 1.298 12 N -0.538 5.538 13 C 0.047 3.953 14 C 0.043 3.957 15 C 0.505 3.495 16 O -0.500 6.500 17 N -0.530 5.530 18 C 0.053 3.947 19 C 0.320 3.680 20 N -0.527 5.527 21 C 0.074 3.926 22 C -0.102 4.102 23 C -0.092 4.092 24 C -0.101 4.101 25 C -0.068 4.068 26 C -0.207 4.207 27 S 0.119 5.881 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.246 0.754 32 H 0.036 0.964 33 H 0.058 0.942 34 H 0.032 0.968 35 H 0.132 0.868 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.164 0.836 42 H 0.176 0.824 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.504 6.284 32.759 33.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.076 3.924 3 H 0.068 0.932 4 C -0.617 4.617 5 H 0.032 0.968 6 C -0.228 4.228 7 N -0.588 5.588 8 Si 0.919 3.081 9 H -0.186 1.186 10 H -0.162 1.162 11 H -0.226 1.226 12 N -0.262 5.262 13 C -0.101 4.101 14 C -0.088 4.088 15 C 0.291 3.709 16 O -0.369 6.369 17 N -0.261 5.261 18 C -0.087 4.087 19 C -0.054 4.054 20 N -0.249 5.249 21 C -0.045 4.045 22 C -0.123 4.123 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.091 4.091 26 C -0.326 4.326 27 S 0.369 5.631 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.149 0.851 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.182 0.818 42 H 0.193 0.807 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.707 7.435 31.373 32.355 hybrid contribution 0.814 -2.679 0.095 2.802 sum -1.893 4.756 31.468 31.882 Atomic orbital electron populations 1.22650 0.98766 1.01112 1.01355 1.19736 0.90892 0.94792 0.86957 0.93153 1.22262 1.37643 1.08825 0.92996 0.96810 1.27386 0.97074 1.06851 0.91507 1.70946 1.39284 1.16999 1.31612 0.83420 0.76485 0.71374 0.76866 1.18632 1.16217 1.22555 1.61740 1.60776 1.02360 1.01338 1.22125 0.96982 0.90356 1.00672 1.22161 0.99236 1.00094 0.87289 1.21687 0.82133 0.83339 0.83702 1.90777 1.35119 1.27235 1.83765 1.45609 1.43579 1.33494 1.03463 1.22661 0.93430 0.86054 1.06524 1.24420 0.94776 0.93457 0.92700 1.66406 1.13463 1.15198 1.29837 1.19340 1.00250 0.99338 0.85616 1.20930 0.96406 0.95605 0.99388 1.21357 0.99100 1.00198 0.90637 1.21594 0.96161 0.93922 1.00571 1.20752 0.96697 0.98302 0.93340 1.23964 1.06286 1.02451 0.99881 1.84205 1.46475 1.34136 0.98256 0.94044 0.90642 0.93161 0.94470 0.94529 0.92360 0.94979 0.85055 0.88547 0.88185 0.88433 0.86276 0.86189 0.81838 0.80704 0.82315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.77 8.04 71.98 0.58 -6.20 16 2 C 0.18 8.28 1.92 44.16 0.08 8.36 16 3 H 0.05 2.19 6.53 -2.39 -0.02 2.17 16 4 C -0.58 -33.50 8.41 25.60 0.22 -33.28 16 5 H 0.01 0.91 6.78 -2.91 -0.02 0.89 16 6 C -0.03 -1.91 5.43 84.65 0.46 -1.45 16 7 N -0.95 -61.47 13.70 21.45 0.29 -61.17 16 8 Si 1.10 48.76 25.28 68.60 1.73 50.49 16 9 H -0.26 -10.53 6.82 99.48 0.68 -9.85 16 10 H -0.24 -8.94 6.35 99.48 0.63 -8.31 16 11 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 12 N -0.54 -22.92 4.48 -906.05 -4.06 -26.98 16 13 C 0.05 2.05 8.53 127.69 1.09 3.14 16 14 C 0.04 1.29 3.45 85.56 0.29 1.59 16 15 C 0.51 16.92 7.33 87.66 0.64 17.56 16 16 O -0.50 -22.38 12.95 -3.02 -0.04 -22.42 16 17 N -0.53 -13.49 3.06 -663.70 -2.03 -15.52 16 18 C 0.05 0.64 9.94 127.77 1.27 1.91 16 19 C 0.32 9.21 7.81 179.60 1.40 10.61 16 20 N -0.53 -18.88 8.63 -188.86 -1.63 -20.51 16 21 C 0.07 2.20 6.94 39.79 0.28 2.48 16 22 C -0.10 -2.57 10.10 22.73 0.23 -2.34 16 23 C -0.09 -1.46 9.99 22.14 0.22 -1.24 16 24 C -0.10 -1.21 10.05 22.26 0.22 -0.99 16 25 C -0.07 -1.02 10.06 22.40 0.23 -0.80 16 26 C -0.21 -4.70 6.52 22.90 0.15 -4.55 16 27 S 0.12 2.30 21.91 -56.49 -1.24 1.06 16 28 H 0.04 1.66 6.68 -2.39 -0.02 1.64 16 29 H 0.07 2.10 6.51 -2.39 -0.02 2.08 16 30 H 0.05 1.89 4.41 -2.39 -0.01 1.88 16 31 H 0.25 16.44 8.72 -92.71 -0.81 15.63 16 32 H 0.04 1.85 6.43 -2.39 -0.02 1.83 16 33 H 0.06 2.57 5.83 -2.38 -0.01 2.56 16 34 H 0.03 1.25 6.40 -2.39 -0.02 1.23 16 35 H 0.13 3.13 7.26 -2.39 -0.02 3.12 16 36 H 0.10 2.24 6.79 -2.39 -0.02 2.22 16 37 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.10 0.84 7.05 -2.39 -0.02 0.82 16 39 H 0.12 0.97 6.44 -2.38 -0.02 0.96 16 40 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 42 H 0.18 0.66 8.06 -2.91 -0.02 0.63 16 43 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -88.20 351.00 1.30 -86.90 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.91 Total: 13.34 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 7.36 Total: -5.19 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -7.43 Total: -124.18 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.04 Total: -22.42 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 1.73 Total: 50.49 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.24 Total: 1.06 kcal Total: -88.20 1.30 -86.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161736645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.983 kcal (2) G-P(sol) polarization free energy of solvation -88.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds