Wall clock time and date at job start Tue Mar 31 2020 18:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47362 * 2 1 4 4 C 1.52996 * 109.47019 * 239.99697 * 2 1 3 5 5 C 1.47199 * 109.47656 * 177.00064 * 4 2 1 6 6 N 3.43553 * 155.04530 * 245.08742 * 2 1 3 7 7 N 1.46908 * 109.47128 * 120.00179 * 2 1 3 8 8 C 1.46899 * 110.99628 * 285.76658 * 7 2 1 9 9 C 1.46896 * 110.99843 * 49.71621 * 7 2 1 10 10 C 1.50704 * 109.46963 * 170.00099 * 9 7 2 11 11 O 1.21294 * 119.99671 * 0.02562 * 10 9 7 12 12 N 1.34770 * 120.00116 * 180.02562 * 10 9 7 13 13 C 1.39938 * 120.00179 * 174.36716 * 12 10 9 14 14 C 1.38683 * 120.11152 * 341.86012 * 13 12 10 15 15 C 1.38222 * 120.01820 * 180.25057 * 14 13 12 16 16 C 1.38394 * 120.24724 * 359.75186 * 15 14 13 17 17 C 1.38078 * 120.23287 * 359.96929 * 16 15 14 18 18 C 1.38998 * 119.97654 * 0.02579 * 17 16 15 19 19 S 1.76201 * 120.12454 * 179.97438 * 18 17 16 20 20 C 1.76205 * 100.00022 * 7.21089 * 19 18 17 21 21 H 1.07994 * 119.99878 * 359.34077 * 20 19 18 22 22 C 1.38681 * 119.99846 * 179.34253 * 20 19 18 23 23 N 1.31655 * 120.00058 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00379 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46932 * 90.00072 * 24 22 20 26 26 H 1.48488 * 109.47352 * 210.00515 * 24 22 20 27 27 H 1.48504 * 109.47013 * 330.00603 * 24 22 20 28 28 H 1.08999 * 109.47119 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46901 * 300.00186 * 1 2 3 30 30 H 1.08996 * 109.46832 * 59.99785 * 1 2 3 31 31 H 1.09001 * 109.47620 * 297.00697 * 4 2 1 32 32 H 1.09009 * 109.47045 * 57.00142 * 4 2 1 33 33 H 1.09003 * 109.46873 * 190.33089 * 8 7 2 34 34 H 1.09003 * 109.47385 * 310.32297 * 8 7 2 35 35 H 1.08995 * 109.47394 * 70.32273 * 8 7 2 36 36 H 1.08996 * 109.47429 * 50.00502 * 9 7 2 37 37 H 1.08999 * 109.47573 * 290.00457 * 9 7 2 38 38 H 0.97001 * 119.99997 * 354.36317 * 12 10 9 39 39 H 1.08002 * 119.99212 * 359.97196 * 14 13 12 40 40 H 1.08000 * 119.87454 * 179.76097 * 15 14 13 41 41 H 1.08009 * 119.88188 * 180.02562 * 16 15 14 42 42 H 1.08004 * 120.01500 * 180.02562 * 17 16 15 43 43 H 0.97000 * 120.00468 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5102 -0.6588 -1.2862 6 7 4.6448 -0.6106 -1.3146 7 7 2.0197 -0.6926 1.1995 8 6 1.8438 0.1402 2.3968 9 6 1.3592 -1.9945 1.3621 10 6 2.0519 -2.7771 2.4479 11 8 3.0020 -2.2971 3.0294 12 7 1.6156 -4.0101 2.7729 13 6 2.3280 -4.7836 3.6962 14 6 3.6462 -4.4726 3.9942 15 6 4.3496 -5.2410 4.9026 16 6 3.7419 -6.3191 5.5220 17 6 2.4281 -6.6345 5.2373 18 6 1.7118 -5.8682 4.3254 19 16 0.0353 -6.2676 3.9586 20 6 -0.2470 -7.5306 5.1545 21 1 0.5470 -7.8280 5.8234 22 6 -1.4887 -8.1427 5.2365 23 7 -1.6998 -9.0860 6.1303 24 14 -2.8622 -7.6278 4.0799 25 1 -2.8107 -8.4581 2.8498 26 1 -4.1726 -7.8189 4.7516 27 1 -2.6950 -6.1971 3.7188 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.7211 -1.7633 -1.2228 32 1 1.6334 -0.2394 -2.1384 33 1 2.3750 -0.3114 3.2347 34 1 2.2432 1.1367 2.2082 35 1 0.7829 0.2133 2.6359 36 1 1.4122 -2.5485 0.4249 37 1 0.3151 -1.8408 1.6347 38 1 0.8078 -4.3614 2.3668 39 1 4.1248 -3.6325 3.5129 40 1 5.3773 -4.9991 5.1301 41 1 4.2969 -6.9153 6.2312 42 1 1.9571 -7.4764 5.7230 43 1 -2.5683 -9.5140 6.1880 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161789651.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:47 Heat of formation + Delta-G solvation = 36.664850 kcal Electronic energy + Delta-G solvation = -25620.485202 eV Core-core repulsion = 21985.685725 eV Total energy + Delta-G solvation = -3634.799477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.54249 -38.99170 -37.61795 -36.30616 -34.51829 -32.75793 -32.51302 -30.38764 -29.94973 -28.52920 -27.84128 -26.01431 -25.04787 -22.71701 -22.24421 -20.83488 -19.88374 -18.51472 -17.87022 -17.51862 -16.71434 -16.16820 -16.12004 -15.46506 -15.36762 -15.16604 -14.74237 -14.21611 -14.02523 -13.92164 -13.70970 -13.62326 -13.38391 -13.24117 -12.75094 -12.72176 -12.52405 -12.44388 -12.10674 -12.03964 -11.98643 -11.66374 -11.52295 -11.38904 -11.29288 -11.19634 -11.14367 -10.65097 -10.22934 -9.86651 -9.51388 -9.32517 -8.99642 -8.82244 -8.59239 -7.72822 -6.80665 -6.53445 -4.29307 1.74349 2.01582 2.67338 2.69625 2.73275 2.78920 2.98978 3.08278 3.17217 3.34435 3.66262 3.83330 4.02850 4.33792 4.36977 4.42624 4.54154 4.69323 4.76461 4.86736 4.89283 4.95698 5.02082 5.16336 5.20386 5.33618 5.36294 5.49351 5.59664 5.62359 5.69888 5.84119 5.93587 6.10465 6.14300 6.51157 6.55489 6.68627 6.77398 6.87505 7.04483 7.17785 7.52076 7.59900 7.66759 7.70686 8.27357 8.29009 8.87764 10.54130 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012925 B = 0.003323 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.758042 B = 8423.656542 C = 9904.167275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.082 3.918 3 H 0.096 0.904 4 C -0.021 4.021 5 C 0.215 3.785 6 N -0.435 5.435 7 N -0.519 5.519 8 C 0.018 3.982 9 C 0.029 3.971 10 C 0.510 3.490 11 O -0.505 6.505 12 N -0.657 5.657 13 C 0.134 3.866 14 C -0.126 4.126 15 C -0.135 4.135 16 C -0.122 4.122 17 C -0.116 4.116 18 C -0.088 4.088 19 S -0.066 6.066 20 C -0.529 4.529 21 H 0.111 0.889 22 C 0.098 3.902 23 N -0.866 5.866 24 Si 0.855 3.145 25 H -0.264 1.264 26 H -0.270 1.270 27 H -0.239 1.239 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.027 0.973 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.410 0.590 39 H 0.151 0.849 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.145 0.855 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.005 16.234 -12.926 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.028 4.028 3 H 0.114 0.886 4 C -0.062 4.062 5 C -0.103 4.103 6 N -0.112 5.112 7 N -0.242 5.242 8 C -0.130 4.130 9 C -0.102 4.102 10 C 0.297 3.703 11 O -0.380 6.380 12 N -0.301 5.301 13 C 0.032 3.968 14 C -0.148 4.148 15 C -0.158 4.158 16 C -0.143 4.143 17 C -0.141 4.141 18 C -0.204 4.204 19 S 0.184 5.816 20 C -0.675 4.675 21 H 0.128 0.872 22 C -0.112 4.112 23 N -0.500 5.500 24 Si 0.680 3.320 25 H -0.189 1.189 26 H -0.194 1.194 27 H -0.163 1.163 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.247 0.753 39 H 0.168 0.832 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.162 0.838 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.755 16.836 -13.425 21.709 hybrid contribution -1.714 -0.745 0.609 1.965 sum 1.041 16.091 -12.816 20.598 Atomic orbital electron populations 1.22502 0.95723 1.03256 1.03337 1.21781 0.93600 0.98494 0.88878 0.88607 1.19421 0.82765 1.04203 0.99770 1.28770 0.94961 0.93654 0.92946 1.81210 1.12999 1.08225 1.08726 1.61885 1.56539 1.02369 1.03438 1.22592 0.99720 0.97337 0.93305 1.22098 0.97179 0.91944 0.98953 1.20513 0.84736 0.80966 0.84131 1.90570 1.27253 1.68167 1.52015 1.43403 1.28494 1.15546 1.42635 1.17276 0.91649 0.93032 0.94834 1.21462 0.92114 1.01444 0.99763 1.20886 0.99454 0.96501 0.98991 1.21017 0.95074 0.97729 1.00439 1.21405 0.94021 1.00492 0.98152 1.21784 0.99797 0.98337 1.00525 1.82411 1.04709 1.47107 1.47359 1.22603 1.03056 1.21577 1.20298 0.87173 1.24783 0.97828 0.93637 0.94976 1.69918 1.24368 1.23006 1.32749 0.86802 0.82170 0.81545 0.81532 1.18922 1.19446 1.16303 0.91436 0.91624 0.91166 0.87498 0.86733 0.88921 0.91496 0.95447 0.87476 0.90740 0.75341 0.83214 0.86802 0.86813 0.83755 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.71 8.39 37.16 0.31 -0.40 16 2 C 0.08 0.45 2.29 -67.71 -0.15 0.29 16 3 H 0.10 0.50 7.84 -51.93 -0.41 0.09 16 4 C -0.02 -0.10 5.16 -29.52 -0.15 -0.25 16 5 C 0.21 2.07 15.10 -20.76 -0.31 1.76 16 6 N -0.43 -5.89 18.54 42.15 0.78 -5.11 16 7 N -0.52 -4.66 4.06 -236.33 -0.96 -5.63 16 8 C 0.02 0.17 8.86 60.06 0.53 0.70 16 9 C 0.03 0.26 4.25 -4.98 -0.02 0.24 16 10 C 0.51 7.04 7.45 -10.99 -0.08 6.96 16 11 O -0.50 -8.48 11.15 5.54 0.06 -8.42 16 12 N -0.66 -10.03 5.25 -9.70 -0.05 -10.08 16 13 C 0.13 2.50 6.53 -83.44 -0.55 1.96 16 14 C -0.13 -2.30 8.80 -39.42 -0.35 -2.65 16 15 C -0.14 -2.33 10.04 -39.53 -0.40 -2.73 16 16 C -0.12 -2.19 10.03 -39.58 -0.40 -2.59 16 17 C -0.12 -2.41 9.24 -39.36 -0.36 -2.77 16 18 C -0.09 -1.84 6.12 -38.75 -0.24 -2.08 16 19 S -0.07 -1.46 18.26 -107.50 -1.96 -3.42 16 20 C -0.53 -14.01 9.60 30.90 0.30 -13.71 16 21 H 0.11 3.08 5.10 -52.49 -0.27 2.81 16 22 C 0.10 2.62 5.50 -17.46 -0.10 2.53 16 23 N -0.87 -24.34 13.97 55.48 0.78 -23.57 16 24 Si 0.86 19.15 27.73 -169.99 -4.71 14.44 16 25 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.24 -5.07 6.74 56.52 0.38 -4.69 16 28 H 0.07 0.24 6.53 -51.93 -0.34 -0.10 16 29 H 0.06 0.30 7.09 -51.93 -0.37 -0.07 16 30 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.11 0.37 6.42 -51.93 -0.33 0.03 16 32 H 0.11 0.16 8.14 -51.92 -0.42 -0.26 16 33 H 0.09 1.17 6.02 -51.93 -0.31 0.86 16 34 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 35 H 0.03 0.22 7.14 -51.93 -0.37 -0.15 16 36 H 0.11 0.71 6.26 -51.93 -0.33 0.38 16 37 H 0.07 0.55 6.77 -51.93 -0.35 0.19 16 38 H 0.41 5.62 7.48 -40.82 -0.31 5.31 16 39 H 0.15 2.75 5.32 -52.49 -0.28 2.47 16 40 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 42 H 0.15 3.25 4.98 -52.48 -0.26 2.98 16 43 H 0.28 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -33.14 362.79 -7.75 -40.89 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.18 Total: 8.19 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -1.97 Total: -12.75 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.54 Total: -44.39 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.06 Total: -8.42 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.44 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -1.96 Total: -3.42 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.14 -7.75 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161789651.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.554 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds