Wall clock time and date at job start Tue Mar 31 2020 18:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47362 * 2 1 4 4 C 1.52996 * 109.47019 * 239.99697 * 2 1 3 5 5 C 1.47199 * 109.47656 * 177.00064 * 4 2 1 6 6 N 3.43553 * 155.04530 * 245.08742 * 2 1 3 7 7 N 1.46908 * 109.47128 * 120.00179 * 2 1 3 8 8 C 1.46899 * 110.99628 * 285.76658 * 7 2 1 9 9 C 1.46896 * 110.99843 * 49.71621 * 7 2 1 10 10 C 1.50704 * 109.46963 * 170.00099 * 9 7 2 11 11 O 1.21294 * 119.99671 * 0.02562 * 10 9 7 12 12 N 1.34770 * 120.00116 * 180.02562 * 10 9 7 13 13 C 1.39938 * 120.00179 * 174.36716 * 12 10 9 14 14 C 1.38683 * 120.11152 * 341.86012 * 13 12 10 15 15 C 1.38222 * 120.01820 * 180.25057 * 14 13 12 16 16 C 1.38394 * 120.24724 * 359.75186 * 15 14 13 17 17 C 1.38078 * 120.23287 * 359.96929 * 16 15 14 18 18 C 1.38998 * 119.97654 * 0.02579 * 17 16 15 19 19 S 1.76201 * 120.12454 * 179.97438 * 18 17 16 20 20 C 1.76205 * 100.00022 * 7.21089 * 19 18 17 21 21 H 1.07994 * 119.99878 * 359.34077 * 20 19 18 22 22 C 1.38681 * 119.99846 * 179.34253 * 20 19 18 23 23 N 1.31655 * 120.00058 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00379 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46932 * 90.00072 * 24 22 20 26 26 H 1.48488 * 109.47352 * 210.00515 * 24 22 20 27 27 H 1.48504 * 109.47013 * 330.00603 * 24 22 20 28 28 H 1.08999 * 109.47119 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46901 * 300.00186 * 1 2 3 30 30 H 1.08996 * 109.46832 * 59.99785 * 1 2 3 31 31 H 1.09001 * 109.47620 * 297.00697 * 4 2 1 32 32 H 1.09009 * 109.47045 * 57.00142 * 4 2 1 33 33 H 1.09003 * 109.46873 * 190.33089 * 8 7 2 34 34 H 1.09003 * 109.47385 * 310.32297 * 8 7 2 35 35 H 1.08995 * 109.47394 * 70.32273 * 8 7 2 36 36 H 1.08996 * 109.47429 * 50.00502 * 9 7 2 37 37 H 1.08999 * 109.47573 * 290.00457 * 9 7 2 38 38 H 0.97001 * 119.99997 * 354.36317 * 12 10 9 39 39 H 1.08002 * 119.99212 * 359.97196 * 14 13 12 40 40 H 1.08000 * 119.87454 * 179.76097 * 15 14 13 41 41 H 1.08009 * 119.88188 * 180.02562 * 16 15 14 42 42 H 1.08004 * 120.01500 * 180.02562 * 17 16 15 43 43 H 0.97000 * 120.00468 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5102 -0.6588 -1.2862 6 7 4.6448 -0.6106 -1.3146 7 7 2.0197 -0.6926 1.1995 8 6 1.8438 0.1402 2.3968 9 6 1.3592 -1.9945 1.3621 10 6 2.0519 -2.7771 2.4479 11 8 3.0020 -2.2971 3.0294 12 7 1.6156 -4.0101 2.7729 13 6 2.3280 -4.7836 3.6962 14 6 3.6462 -4.4726 3.9942 15 6 4.3496 -5.2410 4.9026 16 6 3.7419 -6.3191 5.5220 17 6 2.4281 -6.6345 5.2373 18 6 1.7118 -5.8682 4.3254 19 16 0.0353 -6.2676 3.9586 20 6 -0.2470 -7.5306 5.1545 21 1 0.5470 -7.8280 5.8234 22 6 -1.4887 -8.1427 5.2365 23 7 -1.6998 -9.0860 6.1303 24 14 -2.8622 -7.6278 4.0799 25 1 -2.8107 -8.4581 2.8498 26 1 -4.1726 -7.8189 4.7516 27 1 -2.6950 -6.1971 3.7188 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.7211 -1.7633 -1.2228 32 1 1.6334 -0.2394 -2.1384 33 1 2.3750 -0.3114 3.2347 34 1 2.2432 1.1367 2.2082 35 1 0.7829 0.2133 2.6359 36 1 1.4122 -2.5485 0.4249 37 1 0.3151 -1.8408 1.6347 38 1 0.8078 -4.3614 2.3668 39 1 4.1248 -3.6325 3.5129 40 1 5.3773 -4.9991 5.1301 41 1 4.2969 -6.9153 6.2312 42 1 1.9571 -7.4764 5.7230 43 1 -2.5683 -9.5140 6.1880 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161789651.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:46 Heat of formation + Delta-G solvation = 14.285506 kcal Electronic energy + Delta-G solvation = -25621.455643 eV Core-core repulsion = 21985.685725 eV Total energy + Delta-G solvation = -3635.769919 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.65768 -39.88806 -38.78027 -37.12516 -35.80795 -34.76033 -33.08583 -31.91649 -31.11467 -29.05262 -28.66196 -28.02023 -25.73766 -24.08908 -23.58696 -21.83473 -20.76007 -20.17285 -18.62677 -18.46193 -18.10857 -17.65132 -17.14295 -16.87818 -16.46076 -15.97049 -15.74177 -15.40918 -15.36809 -14.95854 -14.76365 -14.52174 -14.47886 -14.20645 -13.99970 -13.96051 -13.70077 -13.33099 -13.07199 -13.05151 -12.94935 -12.85378 -12.67705 -12.64316 -12.31891 -12.22608 -12.01485 -11.64376 -11.60572 -11.45738 -11.30612 -10.86248 -10.59239 -10.46425 -9.27815 -9.14734 -8.54649 -8.50444 -6.28448 0.31158 0.48274 1.02207 1.32260 1.41694 1.60797 1.65237 1.94381 1.99114 2.06850 2.19315 2.51768 2.80896 2.93874 2.99818 3.30981 3.63786 3.94847 4.05239 4.20447 4.22707 4.30907 4.33214 4.43957 4.47439 4.59262 4.65165 4.65344 4.70088 4.81192 4.91406 5.01388 5.04096 5.14540 5.22759 5.28500 5.41601 5.46566 5.57978 5.67343 5.70731 5.94006 6.12085 6.14217 6.22307 6.49422 6.85266 6.85578 7.15354 8.57026 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012925 B = 0.003323 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.758042 B = 8423.656542 C = 9904.167275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.085 3.915 3 H 0.097 0.903 4 C -0.021 4.021 5 C 0.241 3.759 6 N -0.517 5.517 7 N -0.541 5.541 8 C 0.023 3.977 9 C 0.036 3.964 10 C 0.506 3.494 11 O -0.536 6.536 12 N -0.657 5.657 13 C 0.142 3.858 14 C -0.137 4.137 15 C -0.121 4.121 16 C -0.125 4.125 17 C -0.135 4.135 18 C -0.118 4.118 19 S -0.041 6.041 20 C -0.552 4.552 21 H 0.078 0.922 22 C 0.043 3.957 23 N -0.914 5.914 24 Si 0.916 3.084 25 H -0.256 1.256 26 H -0.263 1.263 27 H -0.217 1.217 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.128 0.872 32 H 0.158 0.842 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.138 0.862 37 H 0.100 0.900 38 H 0.418 0.582 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.139 0.861 42 H 0.118 0.882 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.356 18.385 -15.702 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.024 4.024 3 H 0.115 0.885 4 C -0.061 4.061 5 C -0.075 4.075 6 N -0.195 5.195 7 N -0.266 5.266 8 C -0.124 4.124 9 C -0.094 4.094 10 C 0.295 3.705 11 O -0.413 6.413 12 N -0.302 5.302 13 C 0.040 3.960 14 C -0.159 4.159 15 C -0.143 4.143 16 C -0.146 4.146 17 C -0.159 4.159 18 C -0.233 4.233 19 S 0.207 5.793 20 C -0.699 4.699 21 H 0.096 0.904 22 C -0.163 4.163 23 N -0.550 5.550 24 Si 0.736 3.264 25 H -0.180 1.180 26 H -0.188 1.188 27 H -0.140 1.140 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.146 0.854 32 H 0.175 0.825 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.156 0.844 37 H 0.117 0.883 38 H 0.256 0.744 39 H 0.170 0.830 40 H 0.165 0.835 41 H 0.156 0.844 42 H 0.135 0.865 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.420 19.022 -16.222 25.040 hybrid contribution -1.099 -1.320 1.519 2.293 sum 0.321 17.703 -14.703 23.014 Atomic orbital electron populations 1.22454 0.93718 1.03991 1.04055 1.21848 0.95017 0.98206 0.87313 0.88527 1.19871 0.79241 1.05932 1.01048 1.29777 0.95954 0.91247 0.90541 1.81236 1.15719 1.11040 1.11502 1.61837 1.57809 1.02610 1.04329 1.22436 0.99962 0.97373 0.92665 1.22177 0.97454 0.91621 0.98167 1.21534 0.84278 0.80255 0.84435 1.90558 1.28853 1.68617 1.53268 1.43523 1.28653 1.15949 1.42039 1.17394 0.91925 0.92236 0.94461 1.21667 0.92140 1.01737 1.00317 1.21284 1.00732 0.95043 0.97266 1.21241 0.94044 0.98350 1.00923 1.21359 0.95494 1.00284 0.98804 1.21866 0.99447 0.99946 1.02085 1.81781 1.05963 1.45556 1.46011 1.22877 1.02635 1.23119 1.21229 0.90419 1.25767 1.00437 0.93462 0.96618 1.70035 1.25334 1.24699 1.34979 0.85881 0.78683 0.82408 0.79395 1.17999 1.18779 1.14044 0.90649 0.92471 0.88975 0.85442 0.82461 0.92618 0.90809 0.94172 0.84421 0.88286 0.74403 0.82994 0.83524 0.84357 0.86468 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.47 8.39 71.98 0.60 0.13 16 2 C 0.09 0.58 2.29 44.91 0.10 0.69 16 3 H 0.10 0.68 7.84 -2.39 -0.02 0.66 16 4 C -0.02 -0.10 5.16 28.79 0.15 0.05 16 5 C 0.24 4.13 15.10 89.44 1.35 5.48 16 6 N -0.52 -13.79 18.54 20.01 0.37 -13.42 16 7 N -0.54 -8.25 4.06 -901.62 -3.66 -11.91 16 8 C 0.02 0.41 8.86 127.69 1.13 1.54 16 9 C 0.04 0.52 4.25 85.56 0.36 0.88 16 10 C 0.51 13.03 7.45 87.66 0.65 13.69 16 11 O -0.54 -17.61 11.15 -3.07 -0.03 -17.64 16 12 N -0.66 -18.98 5.25 -303.00 -1.59 -20.57 16 13 C 0.14 5.23 6.53 38.31 0.25 5.48 16 14 C -0.14 -4.86 8.80 22.37 0.20 -4.66 16 15 C -0.12 -3.98 10.04 22.30 0.22 -3.76 16 16 C -0.13 -4.45 10.03 22.27 0.22 -4.23 16 17 C -0.13 -5.79 9.24 22.41 0.21 -5.58 16 18 C -0.12 -4.97 6.12 22.81 0.14 -4.83 16 19 S -0.04 -1.82 18.26 -56.49 -1.03 -2.85 16 20 C -0.55 -30.32 9.60 67.93 0.65 -29.66 16 21 H 0.08 4.67 5.10 -2.91 -0.01 4.65 16 22 C 0.04 2.35 5.50 84.83 0.47 2.82 16 23 N -0.91 -53.27 13.97 21.63 0.30 -52.97 16 24 Si 0.92 39.07 27.73 68.60 1.90 40.97 16 25 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 26 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 27 H -0.22 -8.43 6.74 99.48 0.67 -7.76 16 28 H 0.07 0.11 6.53 -2.39 -0.02 0.10 16 29 H 0.06 0.29 7.09 -2.39 -0.02 0.27 16 30 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.13 0.16 6.42 -2.39 -0.02 0.15 16 32 H 0.16 -0.50 8.14 -2.38 -0.02 -0.52 16 33 H 0.06 1.39 6.02 -2.39 -0.01 1.38 16 34 H 0.07 1.13 7.87 -2.39 -0.02 1.11 16 35 H 0.04 0.57 7.14 -2.39 -0.02 0.55 16 36 H 0.14 1.15 6.26 -2.39 -0.01 1.14 16 37 H 0.10 1.01 6.77 -2.39 -0.02 0.99 16 38 H 0.42 10.51 7.48 -92.71 -0.69 9.82 16 39 H 0.15 5.43 5.32 -3.03 -0.02 5.42 16 40 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 41 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 42 H 0.12 5.68 4.98 -2.91 -0.01 5.67 16 43 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -77.99 362.79 3.31 -74.69 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.34 Total: 25.67 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 6.71 Total: -21.97 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -4.58 Total: -98.87 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.03 Total: -17.64 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.90 Total: 40.97 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -1.03 Total: -2.85 kcal Total: -77.99 3.31 -74.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161789651.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.971 kcal (2) G-P(sol) polarization free energy of solvation -77.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds