Wall clock time and date at job start Tue Mar 31 2020 16:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32559 * 121.64641 * 2 1 4 4 S 1.77223 * 105.31988 * 180.19900 * 3 2 1 5 5 C 1.72202 * 94.84910 * 359.76600 * 4 3 2 6 6 O 1.21832 * 127.06061 * 180.02562 * 5 4 3 7 7 N 1.34241 * 105.88500 * 359.97438 * 5 4 3 8 8 C 1.46497 * 121.38440 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47249 * 90.02458 * 8 7 5 10 10 N 1.46908 * 109.47075 * 179.61603 * 9 8 7 11 11 C 1.46898 * 110.99688 * 287.80950 * 10 9 8 12 12 C 1.50697 * 109.47010 * 298.44629 * 11 10 9 13 13 H 1.07998 * 120.00273 * 4.83627 * 12 11 10 14 14 C 1.37888 * 119.99777 * 184.83507 * 12 11 10 15 15 N 1.31516 * 119.99389 * 180.02562 * 14 12 11 16 16 Si 1.86792 * 119.99942 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47528 * 90.00022 * 16 14 12 18 18 H 1.48502 * 109.46900 * 210.00231 * 16 14 12 19 19 H 1.48502 * 109.47464 * 329.99692 * 16 14 12 20 20 C 1.46898 * 110.99760 * 163.85417 * 10 9 8 21 21 C 1.50701 * 109.46775 * 189.99709 * 20 10 9 22 22 C 1.38234 * 119.61592 * 95.02692 * 21 20 10 23 23 C 1.38626 * 119.15972 * 179.74863 * 22 21 20 24 24 C 1.38677 * 118.42235 * 0.46744 * 23 22 21 25 25 C 1.38182 * 119.15805 * 359.50657 * 24 23 22 26 26 N 1.31849 * 119.62057 * 275.00163 * 21 20 10 27 27 H 1.09003 * 109.47039 * 270.23406 * 1 2 3 28 28 H 1.08996 * 109.47401 * 30.23666 * 1 2 3 29 29 H 1.09005 * 109.47335 * 150.24002 * 1 2 3 30 30 H 1.07999 * 127.33956 * 359.94592 * 3 2 1 31 31 H 1.09000 * 109.46870 * 330.02391 * 8 7 5 32 32 H 1.09002 * 109.47459 * 210.02393 * 8 7 5 33 33 H 1.08996 * 109.47285 * 59.61415 * 9 8 7 34 34 H 1.08997 * 109.47019 * 299.61234 * 9 8 7 35 35 H 1.08995 * 109.47707 * 58.44821 * 11 10 9 36 36 H 1.09001 * 109.47076 * 178.44939 * 11 10 9 37 37 H 0.97006 * 119.99179 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.47073 * 70.00032 * 20 10 9 39 39 H 1.08996 * 109.47324 * 309.99752 * 20 10 9 40 40 H 1.07997 * 120.42038 * 359.94591 * 22 21 20 41 41 H 1.07998 * 120.79275 * 180.23077 * 23 22 21 42 42 H 1.07992 * 120.42237 * 179.78522 * 24 23 22 43 43 H 1.08006 * 119.61481 * 180.25002 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9033 0.6303 -0.0059 5 6 3.5607 -1.0573 -0.0010 6 8 4.3674 -1.9703 -0.0020 7 7 2.2223 -1.1605 0.0053 8 6 1.5577 -2.4660 0.0104 9 6 1.3324 -2.9180 1.4546 10 7 0.6577 -4.2230 1.4597 11 6 -0.7464 -4.0912 1.0488 12 6 -1.4740 -3.2026 2.0245 13 1 -0.9303 -2.7155 2.8204 14 6 -2.8340 -3.0114 1.9010 15 7 -3.4688 -2.2355 2.7522 16 14 -3.7745 -3.8544 0.5248 17 1 -4.2542 -5.1797 0.9925 18 1 -4.9368 -3.0168 0.1342 19 1 -2.8801 -4.0370 -0.6466 20 6 0.7629 -4.8648 2.7769 21 6 0.2821 -6.2899 2.6811 22 6 1.1959 -7.3069 2.4772 23 6 0.7439 -8.6148 2.3958 24 6 -0.6175 -8.8512 2.5131 25 6 -1.4711 -7.7837 2.7163 26 7 -1.0051 -6.5523 2.7931 27 1 -0.3633 0.0042 1.0277 28 1 -0.3634 0.8878 -0.5175 29 1 -0.3634 -0.8922 -0.5101 30 1 1.8153 2.1366 -0.0008 31 1 2.1839 -3.1944 -0.5048 32 1 0.5976 -2.3871 -0.4996 33 1 0.7119 -2.1862 1.9718 34 1 2.2930 -3.0037 1.9626 35 1 -0.7938 -3.6521 0.0524 36 1 -1.2148 -5.0754 1.0348 37 1 -4.4255 -2.1007 2.6651 38 1 0.1491 -4.3219 3.4956 39 1 1.8023 -4.8533 3.1048 40 1 2.2490 -7.0856 2.3857 41 1 1.4351 -9.4300 2.2407 42 1 -1.0053 -9.8572 2.4511 43 1 -2.5324 -7.9597 2.8128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178382562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:49 Heat of formation + Delta-G solvation = 50.769500 kcal Electronic energy + Delta-G solvation = -26643.060092 eV Core-core repulsion = 23008.872239 eV Total energy + Delta-G solvation = -3634.187854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.82841 -39.85526 -37.47535 -36.95474 -32.78357 -32.48701 -32.03535 -31.39474 -29.95185 -27.95499 -27.13528 -25.01732 -23.79091 -23.13393 -22.79940 -21.69248 -20.21067 -19.56074 -17.86640 -17.21128 -16.81243 -16.43183 -15.99504 -15.83069 -15.34126 -15.12943 -14.65242 -14.44780 -14.16673 -14.10259 -13.47091 -13.43527 -13.22543 -13.12755 -12.89590 -12.68385 -12.39658 -12.26856 -11.99951 -11.55123 -11.36839 -11.17904 -11.04946 -10.98968 -10.81135 -10.64809 -10.41529 -10.01232 -9.85456 -9.60447 -9.48906 -9.40366 -8.87071 -8.69232 -8.57005 -7.81509 -7.39475 -6.11142 -4.08751 1.09376 1.43505 1.51522 1.62735 1.92226 2.34675 2.94427 3.26383 3.33251 3.36527 4.09960 4.39452 4.62101 4.74857 4.97503 5.05220 5.09566 5.15367 5.24674 5.33516 5.34717 5.44574 5.49037 5.52620 5.68108 5.74866 5.79581 5.90250 5.95124 6.00624 6.03705 6.20593 6.33592 6.40700 6.43973 6.49059 6.62984 6.79752 6.97476 7.01092 7.10544 7.46299 7.49847 7.85070 7.88127 8.40163 8.51285 8.88130 9.53161 11.01689 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011297 B = 0.004297 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.041264 B = 6515.168581 C = 8488.544787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.123 3.877 3 C -0.254 4.254 4 S -0.024 6.024 5 C 0.483 3.517 6 O -0.478 6.478 7 N -0.526 5.526 8 C 0.106 3.894 9 C 0.048 3.952 10 N -0.526 5.526 11 C 0.150 3.850 12 C -0.534 4.534 13 H 0.073 0.927 14 C 0.082 3.918 15 N -0.898 5.898 16 Si 0.872 3.128 17 H -0.275 1.275 18 H -0.290 1.290 19 H -0.269 1.269 20 C 0.105 3.895 21 C 0.155 3.845 22 C -0.162 4.162 23 C -0.084 4.084 24 C -0.187 4.187 25 C 0.095 3.905 26 N -0.449 5.449 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.189 0.811 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.021 0.979 36 H 0.039 0.961 37 H 0.262 0.738 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.222 -1.369 -4.159 9.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.012 3.988 3 C -0.391 4.391 4 S 0.218 5.782 5 C 0.165 3.835 6 O -0.358 6.358 7 N -0.246 5.246 8 C -0.018 4.018 9 C -0.082 4.082 10 N -0.250 5.250 11 C 0.023 3.977 12 C -0.572 4.572 13 H 0.091 0.909 14 C -0.120 4.120 15 N -0.537 5.537 16 Si 0.700 3.300 17 H -0.201 1.201 18 H -0.217 1.217 19 H -0.194 1.194 20 C -0.023 4.023 21 C 0.017 3.983 22 C -0.183 4.183 23 C -0.110 4.110 24 C -0.207 4.207 25 C -0.062 4.062 26 N -0.158 5.158 27 H 0.117 0.883 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.206 0.794 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.383 -0.842 -4.331 10.369 hybrid contribution -1.810 -1.441 -0.201 2.323 sum 7.573 -2.284 -4.532 9.116 Atomic orbital electron populations 1.20871 0.85757 1.04204 1.05492 1.19664 0.96331 0.84721 0.98124 1.24755 0.92429 1.01228 1.20728 1.84893 1.09564 1.02128 1.81627 1.21521 0.83956 0.95317 0.82724 1.90939 1.48795 1.42377 1.53683 1.46102 1.06182 1.08366 1.63960 1.21931 0.98906 0.81172 0.99808 1.22184 0.98521 0.92756 0.94705 1.62360 1.17762 1.19570 1.25331 1.20316 0.83944 0.97722 0.95714 1.21391 0.93433 1.28442 1.13957 0.90932 1.24793 0.97452 0.94370 0.95418 1.69917 1.09236 1.38063 1.36448 0.86914 0.79769 0.80146 0.83154 1.20060 1.21667 1.19402 1.20853 0.99303 0.89402 0.92761 1.21201 0.88508 0.95922 0.92711 1.21956 1.01142 0.93237 1.01954 1.21464 0.95640 0.96805 0.97111 1.22058 0.94523 1.00437 1.03694 1.22817 1.00228 0.87912 0.95288 1.67763 1.15627 1.21915 1.10475 0.88268 0.89738 0.89908 0.79417 0.88790 0.88220 0.91728 0.92216 0.96126 0.94252 0.92839 0.90885 0.91119 0.85202 0.85526 0.85557 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 9.69 36.01 0.35 -0.99 16 2 C 0.12 1.65 6.59 -82.51 -0.54 1.10 16 3 C -0.25 -2.97 11.24 28.82 0.32 -2.65 16 4 S -0.02 -0.32 22.96 -107.50 -2.47 -2.79 16 5 C 0.48 7.88 8.27 53.82 0.45 8.33 16 6 O -0.48 -9.06 17.55 5.07 0.09 -8.97 16 7 N -0.53 -8.04 2.60 -117.28 -0.31 -8.35 16 8 C 0.11 1.72 5.33 -4.04 -0.02 1.70 16 9 C 0.05 0.85 5.13 -3.82 -0.02 0.83 16 10 N -0.53 -10.13 4.66 -237.52 -1.11 -11.24 16 11 C 0.15 3.32 3.77 -4.98 -0.02 3.30 16 12 C -0.53 -13.46 7.89 -34.44 -0.27 -13.74 16 13 H 0.07 2.01 6.20 -52.49 -0.33 1.68 16 14 C 0.08 2.20 5.47 -17.81 -0.10 2.10 16 15 N -0.90 -25.72 13.96 55.43 0.77 -24.94 16 16 Si 0.87 20.73 27.37 -169.99 -4.65 16.08 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.15 6.68 56.52 0.38 -5.77 16 20 C 0.11 1.95 5.09 -4.98 -0.03 1.93 16 21 C 0.15 2.80 5.70 -82.59 -0.47 2.33 16 22 C -0.16 -2.41 9.72 -39.44 -0.38 -2.80 16 23 C -0.08 -1.09 10.18 -39.28 -0.40 -1.49 16 24 C -0.19 -2.47 10.11 -39.44 -0.40 -2.87 16 25 C 0.10 1.55 11.18 -17.55 -0.20 1.35 16 26 N -0.45 -8.88 8.79 -9.47 -0.08 -8.96 16 27 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 29 H 0.08 1.16 6.18 -51.93 -0.32 0.83 16 30 H 0.19 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.09 1.55 7.80 -51.93 -0.41 1.14 16 32 H 0.10 1.60 4.70 -51.93 -0.24 1.36 16 33 H 0.06 1.28 6.19 -51.93 -0.32 0.96 16 34 H 0.06 1.04 7.80 -51.93 -0.41 0.64 16 35 H 0.02 0.46 6.04 -51.93 -0.31 0.15 16 36 H 0.04 0.94 5.37 -51.93 -0.28 0.66 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.07 1.57 6.55 -51.93 -0.34 1.23 16 39 H 0.07 1.13 7.76 -51.93 -0.40 0.73 16 40 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.15 2.13 8.06 -52.48 -0.42 1.70 16 LS Contribution 363.61 15.07 5.48 5.48 Total: -1.00 -30.79 363.61 -9.48 -40.26 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.47 Total: 5.00 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.73 Total: -1.57 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.72 Total: -53.50 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.65 Total: 16.08 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -2.47 Total: -2.79 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.79 -9.48 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178382562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.033 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds