Wall clock time and date at job start Tue Mar 31 2020 16:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32559 * 121.64641 * 2 1 4 4 S 1.77223 * 105.31988 * 180.19900 * 3 2 1 5 5 C 1.72202 * 94.84910 * 359.76600 * 4 3 2 6 6 O 1.21832 * 127.06061 * 180.02562 * 5 4 3 7 7 N 1.34241 * 105.88500 * 359.97438 * 5 4 3 8 8 C 1.46497 * 121.38440 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47249 * 90.02458 * 8 7 5 10 10 N 1.46908 * 109.47075 * 179.61603 * 9 8 7 11 11 C 1.46898 * 110.99688 * 287.80950 * 10 9 8 12 12 C 1.50697 * 109.47010 * 298.44629 * 11 10 9 13 13 H 1.07998 * 120.00273 * 4.83627 * 12 11 10 14 14 C 1.37888 * 119.99777 * 184.83507 * 12 11 10 15 15 N 1.31516 * 119.99389 * 180.02562 * 14 12 11 16 16 Si 1.86792 * 119.99942 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47528 * 90.00022 * 16 14 12 18 18 H 1.48502 * 109.46900 * 210.00231 * 16 14 12 19 19 H 1.48502 * 109.47464 * 329.99692 * 16 14 12 20 20 C 1.46898 * 110.99760 * 163.85417 * 10 9 8 21 21 C 1.50701 * 109.46775 * 189.99709 * 20 10 9 22 22 C 1.38234 * 119.61592 * 95.02692 * 21 20 10 23 23 C 1.38626 * 119.15972 * 179.74863 * 22 21 20 24 24 C 1.38677 * 118.42235 * 0.46744 * 23 22 21 25 25 C 1.38182 * 119.15805 * 359.50657 * 24 23 22 26 26 N 1.31849 * 119.62057 * 275.00163 * 21 20 10 27 27 H 1.09003 * 109.47039 * 270.23406 * 1 2 3 28 28 H 1.08996 * 109.47401 * 30.23666 * 1 2 3 29 29 H 1.09005 * 109.47335 * 150.24002 * 1 2 3 30 30 H 1.07999 * 127.33956 * 359.94592 * 3 2 1 31 31 H 1.09000 * 109.46870 * 330.02391 * 8 7 5 32 32 H 1.09002 * 109.47459 * 210.02393 * 8 7 5 33 33 H 1.08996 * 109.47285 * 59.61415 * 9 8 7 34 34 H 1.08997 * 109.47019 * 299.61234 * 9 8 7 35 35 H 1.08995 * 109.47707 * 58.44821 * 11 10 9 36 36 H 1.09001 * 109.47076 * 178.44939 * 11 10 9 37 37 H 0.97006 * 119.99179 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.47073 * 70.00032 * 20 10 9 39 39 H 1.08996 * 109.47324 * 309.99752 * 20 10 9 40 40 H 1.07997 * 120.42038 * 359.94591 * 22 21 20 41 41 H 1.07998 * 120.79275 * 180.23077 * 23 22 21 42 42 H 1.07992 * 120.42237 * 179.78522 * 24 23 22 43 43 H 1.08006 * 119.61481 * 180.25002 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9033 0.6303 -0.0059 5 6 3.5607 -1.0573 -0.0010 6 8 4.3674 -1.9703 -0.0020 7 7 2.2223 -1.1605 0.0053 8 6 1.5577 -2.4660 0.0104 9 6 1.3324 -2.9180 1.4546 10 7 0.6577 -4.2230 1.4597 11 6 -0.7464 -4.0912 1.0488 12 6 -1.4740 -3.2026 2.0245 13 1 -0.9303 -2.7155 2.8204 14 6 -2.8340 -3.0114 1.9010 15 7 -3.4688 -2.2355 2.7522 16 14 -3.7745 -3.8544 0.5248 17 1 -4.2542 -5.1797 0.9925 18 1 -4.9368 -3.0168 0.1342 19 1 -2.8801 -4.0370 -0.6466 20 6 0.7629 -4.8648 2.7769 21 6 0.2821 -6.2899 2.6811 22 6 1.1959 -7.3069 2.4772 23 6 0.7439 -8.6148 2.3958 24 6 -0.6175 -8.8512 2.5131 25 6 -1.4711 -7.7837 2.7163 26 7 -1.0051 -6.5523 2.7931 27 1 -0.3633 0.0042 1.0277 28 1 -0.3634 0.8878 -0.5175 29 1 -0.3634 -0.8922 -0.5101 30 1 1.8153 2.1366 -0.0008 31 1 2.1839 -3.1944 -0.5048 32 1 0.5976 -2.3871 -0.4996 33 1 0.7119 -2.1862 1.9718 34 1 2.2930 -3.0037 1.9626 35 1 -0.7938 -3.6521 0.0524 36 1 -1.2148 -5.0754 1.0348 37 1 -4.4255 -2.1007 2.6651 38 1 0.1491 -4.3219 3.4956 39 1 1.8023 -4.8533 3.1048 40 1 2.2490 -7.0856 2.3857 41 1 1.4351 -9.4300 2.2407 42 1 -1.0053 -9.8572 2.4511 43 1 -2.5324 -7.9597 2.8128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178382562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:47 Heat of formation + Delta-G solvation = 30.764255 kcal Electronic energy + Delta-G solvation = -26643.927585 eV Core-core repulsion = 23008.872239 eV Total energy + Delta-G solvation = -3635.055346 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 4.36 seconds Orbital eigenvalues (eV) -42.03556 -41.08446 -38.82353 -38.40309 -34.55305 -33.94473 -33.21391 -32.66183 -31.26033 -29.70540 -28.34436 -26.42002 -25.31630 -24.31674 -24.19932 -22.94897 -21.54218 -21.09942 -19.13381 -18.95166 -18.14450 -17.65169 -17.24356 -17.08207 -16.78727 -16.45756 -16.10457 -15.99992 -15.74032 -15.26012 -14.76478 -14.56235 -14.52773 -14.45599 -14.33730 -14.13687 -13.86788 -13.49255 -13.24963 -13.12576 -12.87819 -12.84067 -12.38770 -12.33508 -12.22328 -12.11518 -12.04992 -11.71956 -11.63380 -11.14551 -10.73502 -10.63554 -10.56599 -10.11351 -9.88731 -9.09157 -8.92091 -8.21056 -6.20398 -0.07922 0.25969 0.39534 0.51046 0.84248 1.16272 1.34435 1.38720 1.45118 1.77240 2.39064 2.83951 3.16986 3.32006 3.57292 3.66763 3.82871 3.88079 4.03549 4.09420 4.25461 4.29497 4.34925 4.36018 4.45077 4.51794 4.66764 4.70755 4.74628 4.77980 4.87435 4.90458 4.97407 5.01499 5.10577 5.18036 5.31814 5.33292 5.35974 5.56213 5.81925 5.90533 6.05292 6.21450 6.27667 6.35549 6.79373 7.29532 7.43648 8.94986 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011297 B = 0.004297 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.041264 B = 6515.168581 C = 8488.544787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.095 3.905 3 C -0.225 4.225 4 S 0.015 5.985 5 C 0.461 3.539 6 O -0.518 6.518 7 N -0.528 5.528 8 C 0.117 3.883 9 C 0.058 3.942 10 N -0.519 5.519 11 C 0.164 3.836 12 C -0.512 4.512 13 H 0.037 0.963 14 C 0.031 3.969 15 N -0.943 5.943 16 Si 0.927 3.073 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.252 1.252 20 C 0.109 3.891 21 C 0.124 3.876 22 C -0.160 4.160 23 C -0.076 4.076 24 C -0.170 4.170 25 C 0.070 3.930 26 N -0.503 5.503 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.227 0.773 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.039 0.961 34 H 0.062 0.938 35 H 0.026 0.974 36 H 0.030 0.970 37 H 0.261 0.739 38 H 0.031 0.969 39 H 0.093 0.907 40 H 0.150 0.850 41 H 0.170 0.830 42 H 0.166 0.834 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.297 -2.259 -5.876 11.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.015 4.015 3 C -0.362 4.362 4 S 0.258 5.742 5 C 0.145 3.855 6 O -0.402 6.402 7 N -0.248 5.248 8 C -0.009 4.009 9 C -0.072 4.072 10 N -0.242 5.242 11 C 0.037 3.963 12 C -0.551 4.551 13 H 0.055 0.945 14 C -0.167 4.167 15 N -0.584 5.584 16 Si 0.753 3.247 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.176 1.176 20 C -0.019 4.019 21 C -0.014 4.014 22 C -0.181 4.181 23 C -0.102 4.102 24 C -0.189 4.189 25 C -0.087 4.087 26 N -0.213 5.213 27 H 0.091 0.909 28 H 0.136 0.864 29 H 0.086 0.914 30 H 0.244 0.756 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.112 0.888 40 H 0.168 0.832 41 H 0.187 0.813 42 H 0.183 0.817 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 10.465 -1.706 -6.059 12.212 hybrid contribution -2.060 -1.127 0.427 2.387 sum 8.405 -2.833 -5.632 10.507 Atomic orbital electron populations 1.20795 0.85522 1.05126 1.04058 1.19840 0.96577 0.84650 1.00407 1.25348 0.91381 1.02224 1.17230 1.84809 1.10057 0.98900 1.80457 1.21979 0.83906 0.96575 0.83015 1.90907 1.49694 1.44014 1.55542 1.46116 1.06230 1.08563 1.63880 1.21703 0.98949 0.82007 0.98205 1.22088 0.97737 0.91470 0.95862 1.62372 1.15828 1.20053 1.25946 1.20062 0.85185 0.96164 0.94934 1.21467 0.93226 1.27421 1.13009 0.94510 1.25474 0.98464 0.95141 0.97611 1.70048 1.09442 1.40248 1.38687 0.86027 0.78834 0.78718 0.81139 1.20574 1.21221 1.17556 1.20831 0.99832 0.90084 0.91155 1.21108 0.88950 0.95947 0.95378 1.22161 1.01512 0.93466 1.00914 1.21958 0.96227 0.96939 0.95074 1.22435 0.94381 1.01202 1.00930 1.23110 1.01329 0.87933 0.96321 1.67592 1.16949 1.24326 1.12411 0.90869 0.86433 0.91394 0.75630 0.88938 0.88244 0.94276 0.91957 0.95582 0.95212 0.92971 0.95049 0.88838 0.83240 0.81301 0.81680 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.43 9.69 71.24 0.69 -1.74 16 2 C 0.09 2.44 6.59 40.71 0.27 2.71 16 3 C -0.22 -4.63 11.24 66.67 0.75 -3.88 16 4 S 0.02 0.37 22.96 -56.49 -1.30 -0.92 16 5 C 0.46 14.91 8.27 129.87 1.07 15.98 16 6 O -0.52 -19.82 17.55 -4.77 -0.08 -19.90 16 7 N -0.53 -16.08 2.60 -643.43 -1.68 -17.76 16 8 C 0.12 3.83 5.33 86.38 0.46 4.29 16 9 C 0.06 2.14 5.13 86.30 0.44 2.58 16 10 N -0.52 -20.55 4.66 -905.38 -4.22 -24.76 16 11 C 0.16 7.44 3.77 85.56 0.32 7.77 16 12 C -0.51 -27.12 7.89 25.60 0.20 -26.92 16 13 H 0.04 2.19 6.20 -2.91 -0.02 2.17 16 14 C 0.03 1.73 5.47 84.66 0.46 2.19 16 15 N -0.94 -56.25 13.96 21.45 0.30 -55.95 16 16 Si 0.93 43.37 27.37 68.60 1.88 45.24 16 17 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.25 -10.95 6.68 99.48 0.66 -10.29 16 20 C 0.11 4.24 5.09 85.56 0.44 4.67 16 21 C 0.12 4.52 5.70 42.56 0.24 4.76 16 22 C -0.16 -4.46 9.72 22.36 0.22 -4.24 16 23 C -0.08 -1.69 10.18 22.47 0.23 -1.46 16 24 C -0.17 -3.97 10.11 22.36 0.23 -3.74 16 25 C 0.07 2.24 11.18 84.67 0.95 3.19 16 26 N -0.50 -20.33 8.79 -183.88 -1.62 -21.94 16 27 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.12 2.12 8.10 -2.39 -0.02 2.10 16 29 H 0.07 1.91 6.18 -2.38 -0.01 1.90 16 30 H 0.23 2.87 8.06 -2.91 -0.02 2.84 16 31 H 0.09 3.07 7.80 -2.39 -0.02 3.05 16 32 H 0.10 3.25 4.70 -2.39 -0.01 3.24 16 33 H 0.04 1.66 6.19 -2.39 -0.01 1.64 16 34 H 0.06 2.26 7.80 -2.39 -0.02 2.24 16 35 H 0.03 1.16 6.04 -2.39 -0.01 1.15 16 36 H 0.03 1.45 5.37 -2.39 -0.01 1.43 16 37 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 38 H 0.03 1.46 6.55 -2.39 -0.02 1.44 16 39 H 0.09 3.08 7.76 -2.39 -0.02 3.06 16 40 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 41 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 42 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 43 H 0.16 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -71.12 363.61 1.25 -69.87 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.99 Total: 19.97 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 6.97 Total: 6.16 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -7.21 Total: -120.41 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.08 Total: -19.90 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.24 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -1.30 Total: -0.92 kcal Total: -71.12 1.25 -69.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178382562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.633 kcal (2) G-P(sol) polarization free energy of solvation -71.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.36 seconds