Wall clock time and date at job start Tue Mar 31 2020 17:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47210 * 2 1 4 4 N 1.46489 * 109.47251 * 179.97438 * 3 2 1 5 5 C 1.36917 * 120.00302 * 97.17681 * 4 3 2 6 6 H 1.07995 * 120.00090 * 159.50244 * 5 4 3 7 7 C 1.39015 * 119.99341 * 339.51046 * 5 4 3 8 8 N 1.31380 * 120.00394 * 358.10968 * 7 5 4 9 9 Si 1.86803 * 119.99762 * 178.11819 * 7 5 4 10 10 H 1.48495 * 109.47376 * 59.99284 * 9 7 5 11 11 H 1.48498 * 109.47409 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46825 * 299.99644 * 9 7 5 13 13 C 1.34780 * 120.00112 * 277.17049 * 4 3 2 14 14 O 1.21639 * 119.99885 * 175.42876 * 13 4 3 15 15 C 1.47362 * 119.99916 * 355.71570 * 13 4 3 16 16 N 1.32058 * 126.45322 * 5.72183 * 15 13 4 17 17 N 1.28459 * 110.20824 * 179.97438 * 16 15 13 18 18 C 1.40114 * 124.93036 * 179.97438 * 17 16 15 19 19 C 1.38860 * 120.04647 * 179.74729 * 18 17 16 20 20 C 1.38089 * 119.96067 * 179.76554 * 19 18 17 21 21 C 1.38505 * 120.03898 * 0.50544 * 20 19 18 22 22 F 1.35093 * 119.95494 * 179.76745 * 21 20 19 23 23 C 1.38499 * 120.08979 * 359.74777 * 21 20 19 24 24 C 1.38093 * 120.04351 * 0.02562 * 23 21 20 25 25 C 1.36120 * 110.13742 * 359.97438 * 17 16 15 26 26 C 1.35739 * 107.08235 * 359.76824 * 25 17 16 27 27 O 1.36073 * 127.26374 * 180.25283 * 26 25 17 28 28 H 1.09004 * 109.46915 * 60.00020 * 1 2 3 29 29 H 1.08998 * 109.47062 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47572 * 300.00730 * 1 2 3 31 31 H 1.08993 * 109.47487 * 239.99769 * 2 1 3 32 32 H 1.09003 * 109.47219 * 119.99264 * 2 1 3 33 33 H 1.09006 * 109.47175 * 59.99188 * 3 2 1 34 34 H 1.09009 * 109.46747 * 299.99989 * 3 2 1 35 35 H 0.97005 * 120.00393 * 179.97438 * 8 7 5 36 36 H 1.08004 * 120.01889 * 0.02562 * 19 18 17 37 37 H 1.07992 * 119.98102 * 180.23570 * 20 19 18 38 38 H 1.07990 * 119.97848 * 179.97438 * 23 21 20 39 39 H 1.07992 * 120.02342 * 180.02562 * 24 23 21 40 40 H 1.08005 * 126.45483 * 179.97438 * 25 17 16 41 41 H 0.96704 * 114.00300 * 270.11863 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1901 1.5905 -1.1755 6 1 5.2187 1.9191 -1.1636 7 6 3.5614 1.3178 -2.3850 8 7 2.3218 0.8826 -2.3977 9 14 4.4792 1.5700 -3.9924 10 1 5.6873 0.7068 -4.0133 11 1 3.5945 1.2100 -5.1294 12 1 4.8857 2.9933 -4.1122 13 6 4.1783 1.2970 1.1590 14 8 5.3918 1.2135 1.1507 15 6 3.4441 1.2327 2.4351 16 7 2.1325 1.1984 2.5847 17 7 1.8294 1.1441 3.8319 18 6 0.5242 1.0967 4.3390 19 6 0.3128 1.0343 5.7100 20 6 -0.9745 0.9925 6.2081 21 6 -2.0542 1.0023 5.3407 22 9 -3.3127 0.9567 5.8296 23 6 -1.8454 1.0592 3.9727 24 6 -0.5597 1.1058 3.4709 25 6 2.9605 1.1392 4.5892 26 6 4.0133 1.1893 3.7338 27 8 5.3357 1.1986 4.0545 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6766 1.9565 0.8900 34 1 1.6766 1.9564 -0.8901 35 1 1.8830 0.6927 -3.2417 36 1 1.1546 1.0226 6.3866 37 1 -1.1394 0.9478 7.2744 38 1 -2.6886 1.0663 3.2980 39 1 -0.3973 1.1506 2.4042 40 1 3.0108 1.0994 5.6673 41 1 5.7031 2.0839 4.1828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180688948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:17 Heat of formation + Delta-G solvation = 21.841939 kcal Electronic energy + Delta-G solvation = -29014.833384 eV Core-core repulsion = 24813.177961 eV Total energy + Delta-G solvation = -4201.655423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.14529 -42.60519 -39.23834 -38.20064 -36.89085 -35.15925 -33.13140 -32.25130 -31.67695 -31.25553 -29.73652 -28.73720 -25.98677 -24.86155 -23.61697 -23.53814 -21.63771 -20.97498 -20.56952 -19.45039 -18.33929 -17.77484 -17.16911 -16.89107 -16.36882 -16.09128 -15.95299 -15.65404 -15.02630 -14.65905 -14.28904 -14.08006 -13.98056 -13.71177 -13.57806 -13.53808 -13.32800 -13.11146 -12.79145 -12.50215 -12.07452 -11.72221 -11.62604 -11.36307 -11.14776 -10.96444 -10.56992 -10.40522 -10.31845 -10.13402 -9.89900 -9.77162 -9.51931 -9.47467 -8.86606 -8.71865 -8.52728 -8.01573 -7.59511 -6.26981 -3.87409 0.47720 0.84884 2.12262 2.33563 2.45061 3.20857 3.23438 3.27676 3.34335 3.93726 4.05679 4.21075 4.35054 4.40483 4.48450 4.76388 4.80209 4.92510 4.94920 5.19684 5.29762 5.35322 5.54805 5.64337 5.72027 5.79183 5.90662 5.98858 6.11812 6.22192 6.36461 6.42995 6.51666 6.72642 6.87366 7.01824 7.06978 7.10968 7.41547 7.58470 7.84800 7.98072 8.10446 8.19675 8.55975 9.15468 9.39686 9.99404 10.63908 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.003892 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.187546 B = 7192.840180 C = 8941.733282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.109 4.109 3 C 0.121 3.879 4 N -0.416 5.416 5 C -0.293 4.293 6 H 0.101 0.899 7 C 0.029 3.971 8 N -0.865 5.865 9 Si 0.932 3.068 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.504 3.496 14 O -0.578 6.578 15 C 0.023 3.977 16 N -0.248 5.248 17 N -0.249 5.249 18 C 0.148 3.852 19 C -0.109 4.109 20 C -0.129 4.129 21 C 0.086 3.914 22 F -0.138 7.138 23 C -0.127 4.127 24 C -0.090 4.090 25 C -0.055 4.055 26 C 0.047 3.953 27 O -0.452 6.452 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.090 0.910 32 H 0.027 0.973 33 H 0.055 0.945 34 H 0.105 0.895 35 H 0.268 0.732 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.160 0.840 40 H 0.182 0.818 41 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.907 1.737 14.350 17.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.147 4.147 3 C -0.002 4.002 4 N -0.132 5.132 5 C -0.422 4.422 6 H 0.119 0.881 7 C -0.174 4.174 8 N -0.505 5.505 9 Si 0.759 3.241 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.462 6.462 15 C -0.140 4.140 16 N -0.080 5.080 17 N -0.031 5.031 18 C 0.056 3.944 19 C -0.129 4.129 20 C -0.149 4.149 21 C 0.067 3.933 22 F -0.117 7.117 23 C -0.147 4.147 24 C -0.110 4.110 25 C -0.194 4.194 26 C -0.008 4.008 27 O -0.257 6.257 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.108 0.892 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.177 0.823 40 H 0.199 0.801 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -10.539 1.033 13.581 17.221 hybrid contribution 0.812 0.444 -0.078 0.928 sum -9.727 1.477 13.503 16.707 Atomic orbital electron populations 1.21637 0.97775 0.99516 1.00137 1.21706 0.93563 0.98296 1.01137 1.21850 0.79575 0.97358 1.01454 1.43712 1.06323 1.58121 1.05070 1.19758 0.98329 1.41949 0.82168 0.88101 1.25400 0.96249 0.96021 0.99758 1.70053 1.11051 1.42561 1.26821 0.85895 0.79113 0.78960 0.80132 1.19770 1.20866 1.19883 1.16614 0.86532 0.86172 0.81549 1.90655 1.12687 1.57090 1.85733 1.23274 0.88875 1.05110 0.96747 1.74288 1.16033 1.20284 0.97387 1.42432 1.03925 1.52328 1.04408 1.17625 0.81262 1.02884 0.92609 1.20672 0.97710 1.01936 0.92602 1.20897 0.90713 1.02769 1.00489 1.17740 0.79348 1.03960 0.92293 1.91507 1.37880 1.93870 1.88403 1.21082 0.98041 1.01940 0.93620 1.21160 0.89757 0.98192 1.01872 1.22736 0.85718 1.12235 0.98693 1.18162 0.84831 1.07942 0.89899 1.84888 1.17651 1.32545 1.90580 0.92801 0.94551 0.94532 0.89217 0.95442 0.92693 0.87740 0.92144 0.84012 0.83780 0.83608 0.82265 0.80129 0.76184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 9.91 37.16 0.37 -1.96 16 2 C -0.11 -2.36 5.18 -26.73 -0.14 -2.50 16 3 C 0.12 2.79 4.15 -4.05 -0.02 2.78 16 4 N -0.42 -10.91 2.64 -116.05 -0.31 -11.21 16 5 C -0.29 -8.06 9.34 -14.99 -0.14 -8.20 16 6 H 0.10 2.88 7.38 -52.49 -0.39 2.49 16 7 C 0.03 0.74 5.29 -17.46 -0.09 0.65 16 8 N -0.86 -21.54 7.88 55.50 0.44 -21.10 16 9 Si 0.93 20.24 29.55 -169.99 -5.02 15.22 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.50 13.19 7.56 -12.55 -0.09 13.10 16 14 O -0.58 -16.72 16.24 3.35 0.05 -16.66 16 15 C 0.02 0.50 6.62 -82.67 -0.55 -0.05 16 16 N -0.25 -4.73 6.43 33.45 0.22 -4.52 16 17 N -0.25 -3.88 3.52 -10.40 -0.04 -3.92 16 18 C 0.15 1.88 6.66 -83.61 -0.56 1.32 16 19 C -0.11 -1.02 9.43 -39.41 -0.37 -1.40 16 20 C -0.13 -1.10 10.02 -39.54 -0.40 -1.49 16 21 C 0.09 0.85 7.30 -39.39 -0.29 0.56 16 22 F -0.14 -1.41 17.26 2.25 0.04 -1.37 16 23 C -0.13 -1.29 10.02 -39.54 -0.40 -1.69 16 24 C -0.09 -1.11 9.59 -39.40 -0.38 -1.49 16 25 C -0.05 -0.79 10.81 -16.54 -0.18 -0.97 16 26 C 0.05 0.87 7.35 -39.09 -0.29 0.58 16 27 O -0.45 -7.92 13.21 -21.87 -0.29 -8.21 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.56 5.29 -51.93 -0.27 0.29 16 31 H 0.09 2.22 6.22 -51.93 -0.32 1.90 16 32 H 0.03 0.62 7.01 -51.93 -0.36 0.25 16 33 H 0.06 1.20 5.37 -51.93 -0.28 0.92 16 34 H 0.10 2.57 5.90 -51.92 -0.31 2.26 16 35 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 36 H 0.14 0.99 6.64 -52.48 -0.35 0.64 16 37 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.16 2.16 4.79 -52.49 -0.25 1.91 16 40 H 0.18 1.77 6.96 -52.48 -0.37 1.41 16 41 H 0.38 4.89 9.07 45.56 0.41 5.30 16 LS Contribution 342.61 15.07 5.16 5.16 Total: -1.00 -32.22 342.61 -6.57 -38.79 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -3.31 Total: 8.58 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -3.51 Total: -0.76 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.31 Total: -40.75 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.23 Total: -24.87 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.22 -6.57 -38.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180688948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.630 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds