Wall clock time and date at job start Tue Mar 31 2020 17:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47210 * 2 1 4 4 N 1.46489 * 109.47251 * 179.97438 * 3 2 1 5 5 C 1.36917 * 120.00302 * 97.17681 * 4 3 2 6 6 H 1.07995 * 120.00090 * 159.50244 * 5 4 3 7 7 C 1.39015 * 119.99341 * 339.51046 * 5 4 3 8 8 N 1.31380 * 120.00394 * 358.10968 * 7 5 4 9 9 Si 1.86803 * 119.99762 * 178.11819 * 7 5 4 10 10 H 1.48495 * 109.47376 * 59.99284 * 9 7 5 11 11 H 1.48498 * 109.47409 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46825 * 299.99644 * 9 7 5 13 13 C 1.34780 * 120.00112 * 277.17049 * 4 3 2 14 14 O 1.21639 * 119.99885 * 175.42876 * 13 4 3 15 15 C 1.47362 * 119.99916 * 355.71570 * 13 4 3 16 16 N 1.32058 * 126.45322 * 5.72183 * 15 13 4 17 17 N 1.28459 * 110.20824 * 179.97438 * 16 15 13 18 18 C 1.40114 * 124.93036 * 179.97438 * 17 16 15 19 19 C 1.38860 * 120.04647 * 179.74729 * 18 17 16 20 20 C 1.38089 * 119.96067 * 179.76554 * 19 18 17 21 21 C 1.38505 * 120.03898 * 0.50544 * 20 19 18 22 22 F 1.35093 * 119.95494 * 179.76745 * 21 20 19 23 23 C 1.38499 * 120.08979 * 359.74777 * 21 20 19 24 24 C 1.38093 * 120.04351 * 0.02562 * 23 21 20 25 25 C 1.36120 * 110.13742 * 359.97438 * 17 16 15 26 26 C 1.35739 * 107.08235 * 359.76824 * 25 17 16 27 27 O 1.36073 * 127.26374 * 180.25283 * 26 25 17 28 28 H 1.09004 * 109.46915 * 60.00020 * 1 2 3 29 29 H 1.08998 * 109.47062 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47572 * 300.00730 * 1 2 3 31 31 H 1.08993 * 109.47487 * 239.99769 * 2 1 3 32 32 H 1.09003 * 109.47219 * 119.99264 * 2 1 3 33 33 H 1.09006 * 109.47175 * 59.99188 * 3 2 1 34 34 H 1.09009 * 109.46747 * 299.99989 * 3 2 1 35 35 H 0.97005 * 120.00393 * 179.97438 * 8 7 5 36 36 H 1.08004 * 120.01889 * 0.02562 * 19 18 17 37 37 H 1.07992 * 119.98102 * 180.23570 * 20 19 18 38 38 H 1.07990 * 119.97848 * 179.97438 * 23 21 20 39 39 H 1.07992 * 120.02342 * 180.02562 * 24 23 21 40 40 H 1.08005 * 126.45483 * 179.97438 * 25 17 16 41 41 H 0.96704 * 114.00300 * 270.11863 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1901 1.5905 -1.1755 6 1 5.2187 1.9191 -1.1636 7 6 3.5614 1.3178 -2.3850 8 7 2.3218 0.8826 -2.3977 9 14 4.4792 1.5700 -3.9924 10 1 5.6873 0.7068 -4.0133 11 1 3.5945 1.2100 -5.1294 12 1 4.8857 2.9933 -4.1122 13 6 4.1783 1.2970 1.1590 14 8 5.3918 1.2135 1.1507 15 6 3.4441 1.2327 2.4351 16 7 2.1325 1.1984 2.5847 17 7 1.8294 1.1441 3.8319 18 6 0.5242 1.0967 4.3390 19 6 0.3128 1.0343 5.7100 20 6 -0.9745 0.9925 6.2081 21 6 -2.0542 1.0023 5.3407 22 9 -3.3127 0.9567 5.8296 23 6 -1.8454 1.0592 3.9727 24 6 -0.5597 1.1058 3.4709 25 6 2.9605 1.1392 4.5892 26 6 4.0133 1.1893 3.7338 27 8 5.3357 1.1986 4.0545 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6766 1.9565 0.8900 34 1 1.6766 1.9564 -0.8901 35 1 1.8830 0.6927 -3.2417 36 1 1.1546 1.0226 6.3866 37 1 -1.1394 0.9478 7.2744 38 1 -2.6886 1.0663 3.2980 39 1 -0.3973 1.1506 2.4042 40 1 3.0108 1.0994 5.6673 41 1 5.7031 2.0839 4.1828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180688948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:16 Heat of formation + Delta-G solvation = 0.841379 kcal Electronic energy + Delta-G solvation = -29015.744036 eV Core-core repulsion = 24813.177961 eV Total energy + Delta-G solvation = -4202.566076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.92961 -43.91679 -40.42162 -39.81071 -38.20427 -37.10759 -34.50480 -33.84156 -33.16084 -32.51040 -30.98869 -29.90119 -27.76900 -26.56371 -24.98474 -24.46861 -22.91381 -22.34268 -22.06005 -20.99543 -19.56386 -18.93579 -18.69573 -18.23340 -17.95594 -17.26384 -16.99183 -16.67702 -16.56800 -15.89396 -15.86405 -15.49211 -15.42720 -15.28118 -14.97252 -14.70584 -14.49520 -14.22023 -14.02632 -13.82176 -13.50373 -13.37933 -13.17491 -12.86729 -12.76611 -12.35291 -12.29434 -12.08159 -11.90471 -11.88148 -11.45610 -11.22457 -10.90940 -10.71039 -10.52603 -10.26883 -10.05589 -9.57917 -9.12770 -8.22217 -5.94090 -0.45938 0.10011 0.75463 1.06512 1.29432 1.42381 1.46925 1.52933 2.26672 2.42869 2.54406 2.87992 3.14448 3.17531 3.25413 3.55390 3.67485 3.82887 3.86189 4.03516 4.10192 4.29670 4.46907 4.49116 4.58369 4.63673 4.79696 4.84340 4.95909 4.96344 5.00165 5.06529 5.21664 5.24656 5.37041 5.37354 5.45737 5.59118 5.68008 5.90347 6.01562 6.14472 6.52985 6.80900 6.85814 7.15187 7.43760 8.01899 8.66557 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.003892 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.187546 B = 7192.840180 C = 8941.733282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.095 4.095 3 C 0.133 3.867 4 N -0.431 5.431 5 C -0.343 4.343 6 H 0.074 0.926 7 C 0.002 3.998 8 N -0.868 5.868 9 Si 0.994 3.006 10 H -0.280 1.280 11 H -0.266 1.266 12 H -0.268 1.268 13 C 0.493 3.507 14 O -0.624 6.624 15 C -0.026 4.026 16 N -0.252 5.252 17 N -0.236 5.236 18 C 0.110 3.890 19 C -0.088 4.088 20 C -0.118 4.118 21 C 0.090 3.910 22 F -0.138 7.138 23 C -0.129 4.129 24 C -0.101 4.101 25 C -0.019 4.019 26 C 0.021 3.979 27 O -0.466 6.466 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.013 0.987 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.274 0.726 36 H 0.176 0.824 37 H 0.179 0.821 38 H 0.161 0.839 39 H 0.141 0.859 40 H 0.239 0.761 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.572 1.612 17.227 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.133 4.133 3 C 0.010 3.990 4 N -0.147 5.147 5 C -0.471 4.471 6 H 0.092 0.908 7 C -0.201 4.201 8 N -0.506 5.506 9 Si 0.818 3.182 10 H -0.206 1.206 11 H -0.190 1.190 12 H -0.193 1.193 13 C 0.281 3.719 14 O -0.511 6.511 15 C -0.186 4.186 16 N -0.087 5.087 17 N -0.018 5.018 18 C 0.020 3.980 19 C -0.108 4.108 20 C -0.137 4.137 21 C 0.070 3.930 22 F -0.117 7.117 23 C -0.148 4.148 24 C -0.121 4.121 25 C -0.159 4.159 26 C -0.034 4.034 27 O -0.273 6.273 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.193 0.807 37 H 0.197 0.803 38 H 0.178 0.822 39 H 0.158 0.842 40 H 0.255 0.745 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -13.271 0.917 16.448 21.154 hybrid contribution 1.410 0.470 -0.752 1.666 sum -11.861 1.387 15.696 19.722 Atomic orbital electron populations 1.21540 0.94349 1.00912 1.01209 1.21503 0.96421 0.96740 0.98669 1.21800 0.78119 0.98105 1.00996 1.43935 1.07383 1.58355 1.04998 1.19708 0.98077 1.45436 0.83915 0.90794 1.26099 0.97106 0.94990 1.01915 1.70150 1.11373 1.41245 1.27786 0.84992 0.77806 0.78818 0.76615 1.20624 1.18980 1.19332 1.17260 0.86500 0.85049 0.83061 1.90574 1.14679 1.58923 1.86957 1.22741 0.90267 1.09510 0.96108 1.74071 1.14776 1.20152 0.99696 1.42738 1.05616 1.49989 1.03485 1.18031 0.79668 1.06070 0.94230 1.21028 0.99242 0.99362 0.91204 1.21276 0.89618 1.00774 1.02034 1.17940 0.79740 1.02942 0.92347 1.91519 1.38112 1.93747 1.88327 1.21183 0.97597 1.01614 0.94437 1.21070 0.90756 0.99137 1.01119 1.23361 0.83525 1.08594 1.00405 1.18368 0.85900 1.09861 0.89298 1.84830 1.17860 1.34274 1.90357 0.92932 0.92961 0.92302 0.92526 0.96829 0.91457 0.89529 0.91559 0.80670 0.80317 0.82184 0.84194 0.74487 0.74355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.25 9.91 71.98 0.71 -3.53 16 2 C -0.09 -4.27 5.18 30.60 0.16 -4.11 16 3 C 0.13 6.41 4.15 86.38 0.36 6.77 16 4 N -0.43 -24.17 2.64 -639.31 -1.69 -25.85 16 5 C -0.34 -20.20 9.34 84.09 0.79 -19.42 16 6 H 0.07 4.61 7.38 -2.91 -0.02 4.59 16 7 C 0.00 0.10 5.29 84.95 0.45 0.55 16 8 N -0.87 -44.50 7.88 21.67 0.17 -44.33 16 9 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 12 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 13 C 0.49 27.61 7.56 86.64 0.65 28.26 16 14 O -0.62 -38.94 16.24 -2.34 -0.04 -38.98 16 15 C -0.03 -1.17 6.62 42.41 0.28 -0.89 16 16 N -0.25 -9.70 6.43 -48.07 -0.31 -10.00 16 17 N -0.24 -6.86 3.52 -186.81 -0.66 -7.52 16 18 C 0.11 2.44 6.66 38.12 0.25 2.70 16 19 C -0.09 -1.19 9.43 22.38 0.21 -0.98 16 20 C -0.12 -1.35 10.02 22.30 0.22 -1.12 16 21 C 0.09 1.39 7.30 22.40 0.16 1.55 16 22 F -0.14 -2.28 17.26 44.97 0.78 -1.51 16 23 C -0.13 -2.23 10.02 22.30 0.22 -2.01 16 24 C -0.10 -2.27 9.59 22.39 0.21 -2.05 16 25 C -0.02 -0.48 10.81 83.45 0.90 0.42 16 26 C 0.02 0.77 7.35 22.59 0.17 0.94 16 27 O -0.47 -16.49 13.21 -92.57 -1.22 -17.71 16 28 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 1.77 5.29 -2.39 -0.01 1.76 16 31 H 0.06 2.92 6.22 -2.39 -0.01 2.91 16 32 H 0.01 0.62 7.01 -2.39 -0.02 0.60 16 33 H 0.07 3.06 5.37 -2.38 -0.01 3.05 16 34 H 0.09 4.45 5.90 -2.38 -0.01 4.44 16 35 H 0.27 13.11 8.31 -92.70 -0.77 12.34 16 36 H 0.18 1.18 6.64 -2.91 -0.02 1.16 16 37 H 0.18 0.89 8.06 -2.91 -0.02 0.86 16 38 H 0.16 2.21 8.06 -2.92 -0.02 2.18 16 39 H 0.14 3.66 4.79 -2.91 -0.01 3.65 16 40 H 0.24 3.18 6.96 -2.91 -0.02 3.16 16 41 H 0.40 10.39 9.07 -74.05 -0.67 9.72 16 Total: -1.00 -77.59 342.61 5.27 -72.32 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.45 Total: 21.73 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 5.76 Total: 7.07 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -2.48 Total: -87.71 kcal Atomic # 8 Polarization: -55.44 SS G_CDS: -1.26 Total: -56.70 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.78 Total: -1.51 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -77.59 5.27 -72.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180688948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.162 kcal (2) G-P(sol) polarization free energy of solvation -77.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds