Wall clock time and date at job start Tue Mar 31 2020 17:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21592 * 120.00054 * 0.02562 * 14 13 3 16 16 C 1.47469 * 120.00071 * 180.02562 * 14 13 3 17 17 N 1.32018 * 126.44336 * 359.68886 * 16 14 13 18 18 N 1.28458 * 110.21205 * 179.81562 * 17 16 14 19 19 C 1.40149 * 124.93232 * 180.17960 * 18 17 16 20 20 C 1.38829 * 120.07617 * 180.02562 * 19 18 17 21 21 C 1.38123 * 119.95100 * 179.72827 * 20 19 18 22 22 C 1.38297 * 120.11578 * 0.57341 * 21 20 19 23 23 C 1.38247 * 120.16410 * 359.70033 * 22 21 20 24 24 C 1.38338 * 120.04006 * 0.02562 * 23 22 21 25 25 F 1.35097 * 120.06060 * 179.97438 * 24 23 22 26 26 C 1.36098 * 110.13363 * 0.45900 * 18 17 16 27 27 C 1.35767 * 107.06268 * 359.72457 * 26 18 17 28 28 O 1.36078 * 127.25819 * 180.02562 * 27 26 18 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 36 36 H 1.07994 * 120.02241 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.94393 * 180.29739 * 21 20 19 38 38 H 1.08003 * 119.92288 * 179.72566 * 22 21 20 39 39 H 1.08001 * 119.98622 * 180.02562 * 23 22 21 40 40 H 1.08003 * 126.46450 * 179.72237 * 26 18 17 41 41 H 0.96705 * 113.99744 * 270.00011 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6325 -0.4316 16 6 0.0449 3.3233 -2.6271 17 7 0.7847 3.4369 -3.7146 18 7 0.1365 4.0647 -4.6288 19 6 0.6299 4.3523 -5.9086 20 6 -0.1598 5.0396 -6.8205 21 6 0.3311 5.3266 -8.0792 22 6 1.6037 4.9203 -8.4370 23 6 2.3921 4.2307 -7.5347 24 6 1.9092 3.9446 -6.2703 25 9 2.6791 3.2703 -5.3885 26 6 -1.0966 4.4153 -4.1719 27 6 -1.1934 3.9595 -2.8967 28 8 -2.2552 4.0860 -2.0551 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8293 -0.0605 2.9503 35 1 2.2720 2.1232 -1.9977 36 1 -1.1554 5.3537 -6.5442 37 1 -0.2815 5.8655 -8.7868 38 1 1.9828 5.1425 -9.4236 39 1 3.3857 3.9151 -7.8170 40 1 -1.8549 4.9544 -4.7204 41 1 -2.2346 4.8871 -1.5137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183797261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:51 Heat of formation + Delta-G solvation = -3.230264 kcal Electronic energy + Delta-G solvation = -28334.958391 eV Core-core repulsion = 24132.215755 eV Total energy + Delta-G solvation = -4202.742635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -49.01990 -42.92315 -39.47087 -38.61854 -37.16784 -34.93225 -33.71865 -32.26084 -31.31370 -30.94319 -30.02329 -29.25971 -26.95494 -24.65796 -23.75164 -22.92104 -21.97983 -21.28949 -20.12649 -19.18778 -18.99507 -17.74539 -17.51383 -17.15236 -16.57585 -16.21930 -15.82211 -15.54589 -15.29170 -15.15511 -14.74862 -14.28534 -14.23468 -14.21891 -14.00650 -13.48806 -13.09910 -12.77199 -12.60578 -12.50107 -11.97044 -11.92601 -11.56187 -11.42620 -11.18724 -10.90653 -10.78780 -10.37288 -10.31026 -10.25884 -10.07297 -9.55240 -9.38911 -9.18550 -9.15047 -8.97218 -8.42921 -8.38856 -7.73056 -6.05800 -4.14398 0.25177 0.62020 1.84923 1.94505 2.06595 3.09209 3.29715 3.35932 3.38972 3.65688 3.82228 4.00949 4.08404 4.27704 4.36547 4.48347 4.55773 4.60616 4.69248 4.96030 5.01938 5.25386 5.36330 5.43173 5.50528 5.61115 5.67108 5.80767 6.15081 6.17256 6.48687 6.56425 6.67869 6.75672 7.14808 7.27618 7.44245 7.50990 7.65401 7.69277 7.73575 7.85795 7.98527 8.24548 8.75403 8.84342 9.17612 9.52282 10.99692 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012939 B = 0.003514 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.490475 B = 7965.898663 C = 9698.018113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.690 5.690 14 C 0.584 3.416 15 O -0.529 6.529 16 C -0.004 4.004 17 N -0.239 5.239 18 N -0.237 5.237 19 C 0.109 3.891 20 C -0.104 4.104 21 C -0.109 4.109 22 C -0.094 4.094 23 C -0.136 4.136 24 C 0.114 3.886 25 F -0.107 7.107 26 C -0.050 4.050 27 C 0.057 3.943 28 O -0.450 6.450 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.023 0.977 32 H 0.100 0.900 33 H 0.031 0.969 34 H 0.264 0.736 35 H 0.395 0.605 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.148 0.852 40 H 0.189 0.811 41 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.913 11.817 -22.495 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.337 5.337 14 C 0.365 3.635 15 O -0.405 6.405 16 C -0.168 4.168 17 N -0.072 5.072 18 N -0.020 5.020 19 C 0.017 3.983 20 C -0.124 4.124 21 C -0.128 4.128 22 C -0.112 4.112 23 C -0.155 4.155 24 C 0.092 3.908 25 F -0.085 7.085 26 C -0.189 4.189 27 C 0.002 3.998 28 O -0.256 6.256 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.118 0.882 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.228 0.772 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.166 0.834 40 H 0.206 0.794 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -6.554 10.837 -22.236 25.590 hybrid contribution 0.707 0.508 0.391 0.954 sum -5.847 11.345 -21.845 25.300 Atomic orbital electron populations 1.21845 0.98261 0.98110 1.01309 1.21938 0.92681 0.99671 1.02345 1.18855 0.94335 0.89271 0.80674 0.93085 1.21246 0.90668 1.38855 1.06274 0.92001 1.24874 0.98577 0.94815 0.95380 1.69900 1.35070 1.37764 1.09313 0.86451 0.84939 0.77566 0.78186 1.20603 1.21095 1.19821 1.46435 1.13979 1.54502 1.18810 1.16725 0.83292 0.79303 0.84152 1.90795 1.51578 1.60073 1.38081 1.23264 0.93249 1.05188 0.95114 1.73962 1.22880 1.13131 0.97270 1.42104 1.10507 1.40108 1.09264 1.17749 0.93958 1.03662 0.82940 1.20809 1.00026 0.98619 0.92941 1.21048 0.96151 1.00129 0.95429 1.21158 0.93782 0.96574 0.99714 1.21209 1.02046 1.00885 0.91386 1.17410 0.87984 0.96538 0.88846 1.91669 1.73309 1.76470 1.67030 1.22813 0.90491 1.08213 0.97401 1.18110 0.88816 1.02589 0.90296 1.84892 1.39063 1.47512 1.54097 0.94291 0.93044 0.95811 0.88165 0.94977 0.92612 0.77155 0.83919 0.84093 0.84203 0.83445 0.79433 0.75540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.51 37.16 0.32 -2.97 16 2 C -0.13 -3.27 5.45 -26.74 -0.15 -3.41 16 3 C 0.27 7.15 2.24 -69.09 -0.15 7.00 16 4 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 5 C -0.53 -14.67 8.73 -34.44 -0.30 -14.97 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -25.26 11.29 55.43 0.63 -24.63 16 9 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 13 N -0.69 -16.06 5.02 -56.00 -0.28 -16.34 16 14 C 0.58 13.12 6.38 -12.50 -0.08 13.04 16 15 O -0.53 -13.09 13.66 3.03 0.04 -13.05 16 16 C 0.00 -0.09 7.13 -82.66 -0.59 -0.67 16 17 N -0.24 -4.21 9.81 33.46 0.33 -3.88 16 18 N -0.24 -3.33 3.52 -10.35 -0.04 -3.37 16 19 C 0.11 1.23 6.67 -83.53 -0.56 0.67 16 20 C -0.10 -0.74 9.43 -39.41 -0.37 -1.11 16 21 C -0.11 -0.55 10.04 -39.60 -0.40 -0.95 16 22 C -0.09 -0.50 10.04 -39.56 -0.40 -0.89 16 23 C -0.14 -1.06 10.02 -39.54 -0.40 -1.45 16 24 C 0.11 1.32 7.27 -39.24 -0.29 1.03 16 25 F -0.11 -1.59 15.51 2.25 0.03 -1.56 16 26 C -0.05 -0.62 10.81 -16.54 -0.18 -0.79 16 27 C 0.06 0.91 7.35 -39.10 -0.29 0.62 16 28 O -0.45 -6.71 13.20 -22.24 -0.29 -7.01 16 29 H 0.04 0.93 5.65 -51.93 -0.29 0.63 16 30 H 0.05 1.28 7.84 -51.93 -0.41 0.87 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.10 2.78 5.95 -51.93 -0.31 2.48 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.40 8.70 8.26 -40.82 -0.34 8.36 16 36 H 0.14 0.67 6.65 -52.49 -0.35 0.32 16 37 H 0.14 0.30 8.06 -52.49 -0.42 -0.13 16 38 H 0.14 0.34 8.06 -52.48 -0.42 -0.08 16 39 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.19 1.41 6.96 -52.48 -0.37 1.04 16 41 H 0.39 4.05 9.07 45.56 0.41 4.46 16 LS Contribution 352.69 15.07 5.32 5.32 Total: -1.00 -34.82 352.69 -6.90 -41.73 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -3.70 Total: 9.73 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -3.92 Total: -3.13 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.64 Total: -48.23 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.25 Total: -20.05 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.03 Total: -1.56 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.82 -6.90 -41.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183797261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.496 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds