Wall clock time and date at job start Tue Mar 31 2020 17:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21592 * 120.00054 * 0.02562 * 14 13 3 16 16 C 1.47469 * 120.00071 * 180.02562 * 14 13 3 17 17 N 1.32018 * 126.44336 * 359.68886 * 16 14 13 18 18 N 1.28458 * 110.21205 * 179.81562 * 17 16 14 19 19 C 1.40149 * 124.93232 * 180.17960 * 18 17 16 20 20 C 1.38829 * 120.07617 * 180.02562 * 19 18 17 21 21 C 1.38123 * 119.95100 * 179.72827 * 20 19 18 22 22 C 1.38297 * 120.11578 * 0.57341 * 21 20 19 23 23 C 1.38247 * 120.16410 * 359.70033 * 22 21 20 24 24 C 1.38338 * 120.04006 * 0.02562 * 23 22 21 25 25 F 1.35097 * 120.06060 * 179.97438 * 24 23 22 26 26 C 1.36098 * 110.13363 * 0.45900 * 18 17 16 27 27 C 1.35767 * 107.06268 * 359.72457 * 26 18 17 28 28 O 1.36078 * 127.25819 * 180.02562 * 27 26 18 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 36 36 H 1.07994 * 120.02241 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.94393 * 180.29739 * 21 20 19 38 38 H 1.08003 * 119.92288 * 179.72566 * 22 21 20 39 39 H 1.08001 * 119.98622 * 180.02562 * 23 22 21 40 40 H 1.08003 * 126.46450 * 179.72237 * 26 18 17 41 41 H 0.96705 * 113.99744 * 270.00011 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6325 -0.4316 16 6 0.0449 3.3233 -2.6271 17 7 0.7847 3.4369 -3.7146 18 7 0.1365 4.0647 -4.6288 19 6 0.6299 4.3523 -5.9086 20 6 -0.1598 5.0396 -6.8205 21 6 0.3311 5.3266 -8.0792 22 6 1.6037 4.9203 -8.4370 23 6 2.3921 4.2307 -7.5347 24 6 1.9092 3.9446 -6.2703 25 9 2.6791 3.2703 -5.3885 26 6 -1.0966 4.4153 -4.1719 27 6 -1.1934 3.9595 -2.8967 28 8 -2.2552 4.0860 -2.0551 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8293 -0.0605 2.9503 35 1 2.2720 2.1232 -1.9977 36 1 -1.1554 5.3537 -6.5442 37 1 -0.2815 5.8655 -8.7868 38 1 1.9828 5.1425 -9.4236 39 1 3.3857 3.9151 -7.8170 40 1 -1.8549 4.9544 -4.7204 41 1 -2.2346 4.8871 -1.5137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183797261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:50 Heat of formation + Delta-G solvation = -28.963400 kcal Electronic energy + Delta-G solvation = -28336.074263 eV Core-core repulsion = 24132.215755 eV Total energy + Delta-G solvation = -4203.858508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -49.93676 -44.04414 -40.62568 -39.89691 -38.28345 -36.92536 -34.75668 -34.21296 -32.82385 -31.97726 -31.09906 -30.25194 -28.94181 -26.00011 -24.85742 -24.41728 -23.06406 -22.24464 -21.83292 -21.04858 -20.00920 -19.09257 -18.62126 -18.10509 -17.73433 -17.50195 -17.24163 -16.98409 -16.55661 -16.18431 -16.05263 -15.79249 -15.65629 -15.30063 -14.94036 -14.87093 -14.60782 -14.19472 -13.94029 -13.56443 -13.36570 -13.21566 -12.97650 -12.93191 -12.86945 -12.71430 -12.28358 -12.20366 -12.11361 -11.64870 -11.54254 -11.26222 -11.10364 -10.94650 -10.56197 -10.24695 -9.97551 -9.73183 -9.28906 -8.18820 -6.36383 -0.49643 0.07009 0.57772 0.99338 1.10969 1.41881 1.42909 1.54091 2.29021 2.33602 2.49281 2.54204 2.91879 3.09120 3.10103 3.47009 3.70227 3.71875 3.87601 4.06449 4.20759 4.24055 4.41369 4.44935 4.52521 4.54778 4.71148 4.86068 4.90023 5.00946 5.05805 5.17662 5.20886 5.32511 5.39324 5.48756 5.53220 5.56406 5.73904 5.83719 5.88827 6.11357 6.52393 6.68659 6.73668 6.91560 7.26486 7.43142 8.86952 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012939 B = 0.003514 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.490475 B = 7965.898663 C = 9698.018113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.279 3.721 4 H 0.006 0.994 5 C -0.553 4.553 6 H 0.063 0.937 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.972 3.028 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.265 1.265 13 N -0.693 5.693 14 C 0.583 3.417 15 O -0.561 6.561 16 C -0.049 4.049 17 N -0.261 5.261 18 N -0.226 5.226 19 C 0.066 3.934 20 C -0.092 4.092 21 C -0.095 4.095 22 C -0.075 4.075 23 C -0.141 4.141 24 C 0.072 3.928 25 F -0.141 7.141 26 C -0.017 4.017 27 C 0.036 3.964 28 O -0.462 6.462 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.267 0.733 35 H 0.400 0.600 36 H 0.174 0.826 37 H 0.185 0.815 38 H 0.179 0.821 39 H 0.158 0.842 40 H 0.245 0.755 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.450 13.736 -26.765 30.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.024 0.976 5 C -0.591 4.591 6 H 0.082 0.918 7 C -0.182 4.182 8 N -0.549 5.549 9 Si 0.796 3.204 10 H -0.201 1.201 11 H -0.203 1.203 12 H -0.190 1.190 13 N -0.341 5.341 14 C 0.368 3.632 15 O -0.440 6.440 16 C -0.210 4.210 17 N -0.096 5.096 18 N -0.010 5.010 19 C -0.025 4.025 20 C -0.112 4.112 21 C -0.113 4.113 22 C -0.093 4.093 23 C -0.160 4.160 24 C 0.051 3.949 25 F -0.119 7.119 26 C -0.157 4.157 27 C -0.019 4.019 28 O -0.270 6.270 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.234 0.766 36 H 0.191 0.809 37 H 0.203 0.797 38 H 0.196 0.804 39 H 0.176 0.824 40 H 0.261 0.739 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -7.089 12.773 -26.534 30.289 hybrid contribution 0.840 0.054 1.439 1.668 sum -6.248 12.827 -25.094 28.867 Atomic orbital electron populations 1.21669 0.96871 0.99314 1.00155 1.21788 0.93828 0.98952 1.01304 1.18482 0.93905 0.89295 0.80695 0.97586 1.21516 0.91270 1.39463 1.06861 0.91841 1.25754 1.03536 0.94093 0.94772 1.70033 1.37110 1.38063 1.09742 0.85348 0.78812 0.77748 0.78458 1.20112 1.20322 1.18971 1.46251 1.14849 1.55121 1.17872 1.17151 0.82285 0.78466 0.85301 1.90747 1.52220 1.61226 1.39772 1.22762 0.95627 1.08141 0.94472 1.73876 1.23668 1.14340 0.97742 1.42481 1.10766 1.38149 1.09562 1.18301 0.94942 1.06712 0.82543 1.21299 1.00660 0.96551 0.92644 1.21630 0.96147 0.98538 0.94967 1.21704 0.93431 0.93812 1.00402 1.21492 1.03086 1.01122 0.90343 1.18040 0.88649 0.98180 0.89987 1.91575 1.74291 1.77617 1.68436 1.23484 0.90281 1.06045 0.95869 1.18278 0.88120 1.03675 0.91866 1.84841 1.38594 1.48967 1.54566 0.94715 0.94851 0.93249 0.90259 0.94623 0.92348 0.76623 0.80875 0.79748 0.80409 0.82431 0.73895 0.73772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.10 8.51 71.98 0.61 -5.49 16 2 C -0.12 -6.45 5.45 30.59 0.17 -6.29 16 3 C 0.28 15.74 2.24 44.24 0.10 15.83 16 4 H 0.01 0.40 7.58 -2.39 -0.02 0.39 16 5 C -0.55 -31.82 8.73 25.60 0.22 -31.60 16 6 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 1.07 5.29 84.65 0.45 1.52 16 8 N -0.91 -53.95 11.29 21.45 0.24 -53.71 16 9 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 N -0.69 -34.59 5.02 -449.36 -2.25 -36.84 16 14 C 0.58 28.06 6.38 86.68 0.55 28.61 16 15 O -0.56 -29.69 13.66 -1.85 -0.03 -29.72 16 16 C -0.05 -1.97 7.13 42.43 0.30 -1.67 16 17 N -0.26 -9.54 9.81 -48.05 -0.47 -10.01 16 18 N -0.23 -6.17 3.52 -186.66 -0.66 -6.83 16 19 C 0.07 1.36 6.67 38.15 0.25 1.62 16 20 C -0.09 -0.88 9.43 22.38 0.21 -0.67 16 21 C -0.09 -0.39 10.04 22.26 0.22 -0.16 16 22 C -0.08 -0.43 10.04 22.29 0.22 -0.20 16 23 C -0.14 -1.90 10.02 22.30 0.22 -1.68 16 24 C 0.07 1.65 7.27 22.49 0.16 1.82 16 25 F -0.14 -4.48 15.51 44.97 0.70 -3.78 16 26 C -0.02 -0.38 10.81 83.46 0.90 0.53 16 27 C 0.04 1.14 7.35 22.58 0.17 1.31 16 28 O -0.46 -13.82 13.20 -92.28 -1.22 -15.04 16 29 H 0.03 1.73 5.65 -2.39 -0.01 1.71 16 30 H 0.03 1.73 7.84 -2.39 -0.02 1.71 16 31 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.08 4.62 5.95 -2.39 -0.01 4.61 16 33 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 35 H 0.40 18.95 8.26 -92.71 -0.77 18.19 16 36 H 0.17 0.52 6.65 -2.91 -0.02 0.50 16 37 H 0.19 -0.71 8.06 -2.91 -0.02 -0.73 16 38 H 0.18 -0.29 8.06 -2.91 -0.02 -0.31 16 39 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.24 2.35 6.96 -2.91 -0.02 2.33 16 41 H 0.40 8.52 9.07 -74.05 -0.67 7.85 16 Total: -1.00 -83.62 352.69 2.79 -80.83 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.32 Total: 25.30 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 4.77 Total: 3.48 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -3.14 Total: -107.39 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -1.24 Total: -44.76 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.70 Total: -3.78 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -83.62 2.79 -80.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183797261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.869 kcal (2) G-P(sol) polarization free energy of solvation -83.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds