Wall clock time and date at job start Tue Mar 31 2020 17:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47576 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47046 * 119.99929 * 9 7 5 12 12 H 1.48498 * 109.47240 * 239.99731 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21600 * 119.99885 * 0.02562 * 14 13 3 16 16 C 1.47467 * 120.00115 * 179.97438 * 14 13 3 17 17 N 1.32008 * 126.44322 * 359.68810 * 16 14 13 18 18 N 1.28463 * 110.21670 * 179.82020 * 17 16 14 19 19 C 1.40133 * 124.93590 * 180.14623 * 18 17 16 20 20 C 1.38863 * 120.04293 * 180.02562 * 19 18 17 21 21 C 1.38088 * 119.95659 * 179.81484 * 20 19 18 22 22 C 1.38501 * 120.03994 * 0.44292 * 21 20 19 23 23 F 1.35108 * 119.95217 * 179.76732 * 22 21 20 24 24 C 1.38487 * 120.09143 * 359.79265 * 22 21 20 25 25 C 1.38093 * 120.04222 * 359.97438 * 24 22 21 26 26 C 1.36104 * 110.12927 * 0.45499 * 18 17 16 27 27 C 1.35769 * 107.06249 * 359.72496 * 26 18 17 28 28 O 1.36075 * 127.25809 * 180.02562 * 27 26 18 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 35 35 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 36 36 H 1.08001 * 120.02236 * 0.02687 * 20 19 18 37 37 H 1.08001 * 119.98047 * 180.18720 * 21 20 19 38 38 H 1.08005 * 119.98324 * 179.97438 * 24 22 21 39 39 H 1.07999 * 120.02300 * 179.97438 * 25 24 22 40 40 H 1.07998 * 126.46630 * 179.75161 * 26 18 17 41 41 H 0.96698 * 114.00137 * 269.97723 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6156 2.6091 12 1 6.4962 -0.5190 1.4625 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3413 2.6326 -0.4315 16 6 0.0451 3.3243 -2.6267 17 7 0.7853 3.4387 -3.7138 18 7 0.1374 4.0672 -4.6278 19 6 0.6314 4.3565 -5.9069 20 6 -0.1588 5.0446 -6.8181 21 6 0.3311 5.3320 -8.0768 22 6 1.6064 4.9264 -8.4336 23 9 2.0823 5.2044 -9.6672 24 6 2.3943 4.2358 -7.5280 25 6 1.9097 3.9506 -6.2667 26 6 -1.0960 4.4174 -4.1711 27 6 -1.1932 3.9606 -2.8963 28 8 -2.2552 4.0863 -2.0549 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8293 -0.0605 2.9501 35 1 2.2718 2.1232 -1.9978 36 1 -1.1547 5.3578 -6.5415 37 1 -0.2820 5.8698 -8.7848 38 1 3.3884 3.9199 -7.8082 39 1 2.5242 3.4117 -5.5608 40 1 -1.8543 4.9566 -4.7194 41 1 -2.2348 4.8866 -1.5126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183818878.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:06 Heat of formation + Delta-G solvation = -32.604383 kcal Electronic energy + Delta-G solvation = -27721.541388 eV Core-core repulsion = 23517.524995 eV Total energy + Delta-G solvation = -4204.016393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -49.96723 -44.05721 -40.63047 -39.93193 -38.22561 -36.89436 -34.58444 -34.10703 -32.76153 -32.59314 -31.07403 -30.03049 -28.87307 -25.92651 -24.77929 -24.53547 -23.16126 -22.21369 -21.79508 -21.01640 -19.98304 -18.99446 -18.76324 -18.30091 -17.65210 -17.40983 -17.23503 -16.97502 -16.63020 -16.17530 -16.03708 -15.79518 -15.39253 -15.16509 -14.94235 -14.65848 -14.57113 -14.26208 -14.03424 -13.89789 -13.56857 -13.38052 -13.19369 -12.90442 -12.87349 -12.70611 -12.18125 -12.12315 -12.07889 -11.61984 -11.54145 -11.06759 -11.05378 -10.91428 -10.54354 -10.31007 -10.18181 -9.69504 -9.21588 -8.16582 -6.33783 -0.54298 0.06088 0.59296 0.96951 1.14390 1.43961 1.44814 1.57033 2.31208 2.35081 2.48163 2.52189 3.01233 3.12723 3.13990 3.45491 3.63109 3.71782 3.81450 3.99408 4.07488 4.20187 4.46347 4.48121 4.55520 4.55764 4.74299 4.81741 4.90207 4.95995 4.98962 5.05319 5.12321 5.24781 5.42227 5.50778 5.52441 5.59530 5.77158 5.83056 5.90209 6.14590 6.56318 6.72322 6.77387 6.96071 7.30248 7.47609 8.89274 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.003044 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.434262 B = 9195.631077 C =11058.678370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.279 3.721 4 H 0.005 0.995 5 C -0.549 4.549 6 H 0.068 0.932 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.692 5.692 14 C 0.583 3.417 15 O -0.563 6.563 16 C -0.044 4.044 17 N -0.260 5.260 18 N -0.223 5.223 19 C 0.104 3.896 20 C -0.083 4.083 21 C -0.120 4.120 22 C 0.092 3.908 23 F -0.139 7.139 24 C -0.132 4.132 25 C -0.091 4.091 26 C -0.017 4.017 27 C 0.035 3.965 28 O -0.464 6.464 29 H 0.031 0.969 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.179 0.821 37 H 0.179 0.821 38 H 0.160 0.840 39 H 0.141 0.859 40 H 0.242 0.758 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.136 12.349 -23.506 27.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.023 0.977 5 C -0.587 4.587 6 H 0.086 0.914 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.796 3.204 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.340 5.340 14 C 0.367 3.633 15 O -0.441 6.441 16 C -0.204 4.204 17 N -0.095 5.095 18 N -0.006 5.006 19 C 0.014 3.986 20 C -0.103 4.103 21 C -0.139 4.139 22 C 0.073 3.927 23 F -0.118 7.118 24 C -0.151 4.151 25 C -0.111 4.111 26 C -0.157 4.157 27 C -0.021 4.021 28 O -0.272 6.272 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.236 0.764 36 H 0.196 0.804 37 H 0.197 0.803 38 H 0.178 0.822 39 H 0.159 0.841 40 H 0.258 0.742 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -6.785 11.435 -23.373 26.890 hybrid contribution 0.754 0.317 0.823 1.160 sum -6.031 11.752 -22.550 26.134 Atomic orbital electron populations 1.21671 0.96957 0.99238 1.00173 1.21792 0.93743 0.99044 1.01343 1.18471 0.93893 0.89234 0.80826 0.97715 1.21560 0.91243 1.39150 1.06777 0.91421 1.25749 1.03384 0.94243 0.94892 1.70046 1.37000 1.38231 1.09818 0.85311 0.79011 0.77913 0.78181 1.18715 1.20760 1.20273 1.46199 1.14822 1.55124 1.17841 1.17169 0.82293 0.78481 0.85317 1.90763 1.52300 1.61168 1.39865 1.22659 0.95492 1.07921 0.94364 1.73599 1.23849 1.14510 0.97592 1.42472 1.10515 1.37985 1.09664 1.18015 0.95776 1.03556 0.81259 1.21046 1.01117 0.96786 0.91362 1.21301 0.94229 1.01200 0.97180 1.18003 0.94194 0.99821 0.80717 1.91530 1.88565 1.91747 1.39909 1.21204 1.01976 0.99746 0.92182 1.20893 0.93936 0.99282 0.96985 1.23482 0.90460 1.05916 0.95875 1.18316 0.88197 1.03696 0.91870 1.84841 1.38770 1.49021 1.54586 0.95024 0.93416 0.94503 0.90485 0.94377 0.92468 0.76364 0.80406 0.80331 0.82217 0.84135 0.74198 0.73784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.87 8.51 71.98 0.61 -5.26 16 2 C -0.12 -6.20 5.45 30.59 0.17 -6.03 16 3 C 0.28 14.94 2.24 44.24 0.10 15.04 16 4 H 0.00 0.31 7.58 -2.38 -0.02 0.29 16 5 C -0.55 -30.06 8.73 25.60 0.22 -29.84 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.96 5.29 84.66 0.45 1.41 16 8 N -0.91 -52.70 11.29 21.45 0.24 -52.45 16 9 Si 0.97 42.77 29.54 68.60 2.03 44.79 16 10 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 13 N -0.69 -31.79 5.02 -449.33 -2.25 -34.05 16 14 C 0.58 26.00 6.38 86.68 0.55 26.55 16 15 O -0.56 -28.35 13.66 -1.88 -0.03 -28.37 16 16 C -0.04 -1.57 7.13 42.43 0.30 -1.27 16 17 N -0.26 -8.05 10.84 -48.06 -0.52 -8.57 16 18 N -0.22 -5.10 3.52 -186.79 -0.66 -5.75 16 19 C 0.10 1.78 6.66 38.11 0.25 2.03 16 20 C -0.08 -0.77 9.43 22.38 0.21 -0.56 16 21 C -0.12 -0.97 10.02 22.30 0.22 -0.75 16 22 C 0.09 1.15 7.30 22.39 0.16 1.31 16 23 F -0.14 -1.97 17.27 44.97 0.78 -1.19 16 24 C -0.13 -1.81 10.02 22.29 0.22 -1.59 16 25 C -0.09 -1.60 9.59 22.38 0.21 -1.39 16 26 C -0.02 -0.33 10.81 83.46 0.90 0.57 16 27 C 0.03 1.00 7.35 22.58 0.17 1.16 16 28 O -0.46 -13.00 13.20 -92.25 -1.22 -14.22 16 29 H 0.03 1.59 7.84 -2.39 -0.02 1.57 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.75 5.65 -2.38 -0.01 1.73 16 32 H 0.08 4.35 5.95 -2.39 -0.01 4.34 16 33 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 35 H 0.40 16.88 8.26 -92.71 -0.77 16.12 16 36 H 0.18 0.41 6.64 -2.91 -0.02 0.39 16 37 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 38 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 39 H 0.14 2.84 7.64 -2.91 -0.02 2.81 16 40 H 0.24 1.84 6.96 -2.91 -0.02 1.82 16 41 H 0.40 7.84 9.07 -74.06 -0.67 7.17 16 Total: -1.00 -75.10 354.60 2.81 -72.29 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: -0.32 Total: 26.14 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 4.76 Total: 1.38 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -3.19 Total: -100.82 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -1.24 Total: -42.60 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.78 Total: -1.19 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -75.10 2.81 -72.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183818878.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.685 kcal (2) G-P(sol) polarization free energy of solvation -75.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds