Wall clock time and date at job start Tue Mar 31 2020 17:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21604 * 119.99560 * 0.02562 * 14 13 3 16 16 C 1.47471 * 120.00460 * 180.02562 * 14 13 3 17 17 N 1.32001 * 126.44331 * 359.68781 * 16 14 13 18 18 N 1.28465 * 110.21660 * 179.82142 * 17 16 14 19 19 C 1.40131 * 124.93491 * 180.14926 * 18 17 16 20 20 C 1.38861 * 120.04045 * 180.02562 * 19 18 17 21 21 C 1.38090 * 119.95466 * 179.76796 * 20 19 18 22 22 C 1.38499 * 120.04431 * 0.52648 * 21 20 19 23 23 F 1.35098 * 119.95674 * 179.72280 * 22 21 20 24 24 C 1.38496 * 120.08660 * 359.70501 * 22 21 20 25 25 C 1.38094 * 120.04196 * 0.04349 * 24 22 21 26 26 C 1.36100 * 110.12844 * 0.45084 * 18 17 16 27 27 C 1.35774 * 107.06546 * 359.73141 * 26 18 17 28 28 O 1.36073 * 127.26398 * 179.97438 * 27 26 18 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 36 36 H 1.08002 * 120.02487 * 0.02562 * 20 19 18 37 37 H 1.08002 * 119.98195 * 180.23392 * 21 20 19 38 38 H 1.07994 * 119.97842 * 180.02562 * 24 22 21 39 39 H 1.08001 * 120.02121 * 180.02562 * 25 24 22 40 40 H 1.07998 * 126.47210 * 179.75883 * 26 18 17 41 41 H 0.96697 * 113.99914 * 270.00576 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3417 2.6318 0.4318 16 6 0.0451 3.3243 2.6268 17 7 0.7810 3.4287 3.7177 18 7 0.1373 4.0671 4.6279 19 6 0.6308 4.3551 5.9074 20 6 -0.1549 5.0537 6.8145 21 6 0.3313 5.3323 8.0766 22 6 1.6059 4.9250 8.4342 23 9 2.0819 5.2035 9.6675 24 6 2.3929 4.2324 7.5292 25 6 1.9083 3.9473 6.2679 26 6 -1.0960 4.4174 4.1711 27 6 -1.1932 3.9606 2.8962 28 8 -2.2552 4.0864 2.0548 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8293 -0.0604 -2.9502 35 1 2.2719 2.1232 1.9977 36 1 -1.1472 5.3752 6.5346 37 1 -0.2809 5.8723 8.7838 38 1 3.3863 3.9153 7.8101 39 1 2.5221 3.4068 5.5627 40 1 -1.8540 4.9572 4.7191 41 1 -2.8894 3.3586 2.1104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183818894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:17 Heat of formation + Delta-G solvation = -32.598480 kcal Electronic energy + Delta-G solvation = -27724.020841 eV Core-core repulsion = 23520.004705 eV Total energy + Delta-G solvation = -4204.016137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 6.48 seconds Orbital eigenvalues (eV) -49.96939 -44.05790 -40.63098 -39.93165 -38.22796 -36.89260 -34.58516 -34.10853 -32.75428 -32.59291 -31.07450 -30.02913 -28.87191 -25.92673 -24.77710 -24.53521 -23.15891 -22.21427 -21.79401 -21.01594 -19.98483 -18.99118 -18.76680 -18.31218 -17.61519 -17.44515 -17.19922 -17.00339 -16.63429 -16.19193 -16.02202 -15.79667 -15.38931 -15.16278 -14.93795 -14.65648 -14.56584 -14.26469 -14.00689 -13.92918 -13.55188 -13.38245 -13.18293 -12.92800 -12.88021 -12.67171 -12.19060 -12.12708 -12.07742 -11.61408 -11.54295 -11.07245 -11.05782 -10.91160 -10.53958 -10.30985 -10.18169 -9.69291 -9.21595 -8.16793 -6.34043 -0.54291 0.06097 0.59285 0.97098 1.14241 1.44022 1.44917 1.55496 2.30538 2.35482 2.48367 2.51832 3.01043 3.12441 3.14029 3.45444 3.63111 3.71801 3.81474 3.99474 4.07525 4.20206 4.46345 4.49297 4.55679 4.56960 4.74831 4.81765 4.90288 4.96033 4.98982 5.05666 5.12453 5.25506 5.43086 5.50838 5.53066 5.59044 5.77850 5.83220 5.90527 6.15065 6.56319 6.71809 6.77808 6.96011 7.29977 7.47481 8.88804 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012205 B = 0.003046 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.577285 B = 9191.448375 C =11063.385084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.278 3.722 4 H 0.003 0.997 5 C -0.551 4.551 6 H 0.067 0.933 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.692 5.692 14 C 0.583 3.417 15 O -0.563 6.563 16 C -0.044 4.044 17 N -0.260 5.260 18 N -0.223 5.223 19 C 0.104 3.896 20 C -0.083 4.083 21 C -0.120 4.120 22 C 0.092 3.908 23 F -0.139 7.139 24 C -0.132 4.132 25 C -0.091 4.091 26 C -0.017 4.017 27 C 0.035 3.965 28 O -0.464 6.464 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.179 0.821 37 H 0.179 0.821 38 H 0.160 0.840 39 H 0.141 0.859 40 H 0.242 0.758 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.459 9.317 24.692 27.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.021 0.979 5 C -0.589 4.589 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.795 3.205 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.192 1.192 13 N -0.340 5.340 14 C 0.367 3.633 15 O -0.441 6.441 16 C -0.204 4.204 17 N -0.095 5.095 18 N -0.006 5.006 19 C 0.014 3.986 20 C -0.103 4.103 21 C -0.139 4.139 22 C 0.073 3.927 23 F -0.117 7.117 24 C -0.151 4.151 25 C -0.111 4.111 26 C -0.157 4.157 27 C -0.021 4.021 28 O -0.272 6.272 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.236 0.764 36 H 0.196 0.804 37 H 0.197 0.803 38 H 0.178 0.822 39 H 0.159 0.841 40 H 0.258 0.742 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -7.663 9.444 24.144 27.035 hybrid contribution 0.439 -0.461 -0.508 0.814 sum -7.224 8.983 23.637 26.298 Atomic orbital electron populations 1.21671 0.96772 0.99320 1.00253 1.21782 0.93980 0.98790 1.01355 1.18468 0.93836 0.89361 0.80785 0.97943 1.21540 0.91330 1.39234 1.06827 0.91504 1.25746 1.03383 0.94249 0.94855 1.70038 1.37052 1.38175 1.09796 0.85366 0.79014 0.78830 0.77253 1.19495 1.20965 1.19207 1.46197 1.14852 1.55102 1.17828 1.17173 0.82440 0.78341 0.85317 1.90765 1.52490 1.61053 1.39786 1.22658 0.96466 1.07199 0.94111 1.73596 1.24054 1.14540 0.97355 1.42470 1.11051 1.37417 1.09696 1.18013 0.95823 1.03518 0.81251 1.21047 1.01202 0.96692 0.91368 1.21300 0.94268 1.01227 0.97117 1.18003 0.94181 0.99819 0.80732 1.91528 1.88546 1.91740 1.39935 1.21205 1.01973 0.99733 0.92198 1.20893 0.93846 0.99367 0.96991 1.23482 0.90331 1.06967 0.94955 1.18317 0.89372 1.03779 0.90610 1.84846 1.32926 1.49416 1.60045 0.93270 0.95133 0.94161 0.94278 0.90585 0.92457 0.76365 0.80404 0.80334 0.82219 0.84131 0.74196 0.73770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.51 71.98 0.61 -5.05 16 2 C -0.12 -6.11 5.45 30.60 0.17 -5.94 16 3 C 0.28 14.95 2.24 44.25 0.10 15.05 16 4 H 0.00 0.17 7.58 -2.39 -0.02 0.15 16 5 C -0.55 -30.35 8.73 25.60 0.22 -30.13 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.99 5.29 84.66 0.45 1.44 16 8 N -0.91 -52.84 11.29 21.45 0.24 -52.60 16 9 Si 0.97 42.99 29.54 68.60 2.03 45.02 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 13 N -0.69 -31.81 5.02 -449.33 -2.25 -34.07 16 14 C 0.58 25.99 6.38 86.68 0.55 26.55 16 15 O -0.56 -28.34 13.66 -1.88 -0.03 -28.37 16 16 C -0.04 -1.57 7.13 42.44 0.30 -1.26 16 17 N -0.26 -8.04 10.84 -48.06 -0.52 -8.57 16 18 N -0.22 -5.09 3.52 -186.80 -0.66 -5.75 16 19 C 0.10 1.78 6.66 38.11 0.25 2.03 16 20 C -0.08 -0.77 9.43 22.38 0.21 -0.56 16 21 C -0.12 -0.97 10.02 22.30 0.22 -0.75 16 22 C 0.09 1.14 7.30 22.39 0.16 1.31 16 23 F -0.14 -1.97 17.27 44.97 0.78 -1.19 16 24 C -0.13 -1.81 10.02 22.30 0.22 -1.59 16 25 C -0.09 -1.60 9.59 22.38 0.21 -1.39 16 26 C -0.02 -0.33 10.81 83.46 0.90 0.57 16 27 C 0.03 1.00 7.35 22.58 0.17 1.16 16 28 O -0.46 -13.01 13.20 -92.22 -1.22 -14.23 16 29 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.03 1.50 7.84 -2.39 -0.02 1.48 16 31 H 0.04 1.81 5.64 -2.38 -0.01 1.79 16 32 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 4.26 5.95 -2.39 -0.01 4.25 16 34 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 35 H 0.40 16.89 8.26 -92.71 -0.77 16.12 16 36 H 0.18 0.41 6.64 -2.91 -0.02 0.39 16 37 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 38 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 39 H 0.14 2.83 7.64 -2.91 -0.02 2.81 16 40 H 0.24 1.84 6.96 -2.91 -0.02 1.82 16 41 H 0.40 7.74 9.07 -74.06 -0.67 7.07 16 Total: -1.00 -75.45 354.60 2.81 -72.64 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.32 Total: 25.68 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 4.76 Total: 1.43 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -3.19 Total: -100.98 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -1.24 Total: -42.60 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.78 Total: -1.19 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -75.45 2.81 -72.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183818894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.042 kcal (2) G-P(sol) polarization free energy of solvation -75.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.48 seconds