Wall clock time and date at job start Tue Mar 31 2020 17:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38059 * 126.34979 * 2 1 4 4 C 1.38832 * 134.13618 * 359.97438 * 3 2 1 5 5 C 1.37849 * 119.68713 * 179.97438 * 4 3 2 6 6 C 1.38782 * 120.45363 * 359.97438 * 5 4 3 7 7 C 1.36600 * 120.66614 * 0.02562 * 6 5 4 8 8 C 1.39744 * 119.88954 * 359.95393 * 7 6 5 9 9 N 1.35784 * 133.60489 * 180.29767 * 8 7 6 10 10 C 1.30109 * 109.64204 * 180.12897 * 9 8 7 11 11 C 1.50703 * 124.94876 * 179.89000 * 10 9 8 12 12 C 1.52998 * 109.47017 * 117.09455 * 11 10 9 13 13 C 1.53006 * 109.46903 * 357.09728 * 11 10 9 14 14 N 1.46500 * 109.47429 * 237.09777 * 11 10 9 15 15 C 1.34774 * 120.00003 * 180.02562 * 14 11 10 16 16 O 1.21277 * 119.99898 * 359.97438 * 15 14 11 17 17 C 1.50701 * 119.99950 * 179.97438 * 15 14 11 18 18 S 1.80995 * 109.47152 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00194 * 179.97438 * 18 17 15 20 20 H 1.08010 * 119.99647 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00603 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99488 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00275 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47282 * 90.00196 * 23 21 19 25 25 H 1.48506 * 109.46844 * 210.00028 * 23 21 19 26 26 H 1.48502 * 109.47091 * 329.99470 * 23 21 19 27 27 H 1.09003 * 109.47102 * 265.21066 * 1 2 3 28 28 H 1.09002 * 109.47225 * 25.21556 * 1 2 3 29 29 H 1.09004 * 109.47134 * 145.21466 * 1 2 3 30 30 H 1.07996 * 120.15763 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.77686 * 179.97438 * 5 4 3 32 32 H 1.07999 * 119.67032 * 179.97438 * 6 5 4 33 33 H 1.07999 * 120.05875 * 179.97438 * 7 6 5 34 34 H 1.09000 * 109.47308 * 186.90342 * 12 11 10 35 35 H 1.09005 * 109.47185 * 66.90125 * 12 11 10 36 36 H 1.08998 * 109.47223 * 306.90544 * 12 11 10 37 37 H 1.09004 * 109.46663 * 179.97438 * 13 11 10 38 38 H 1.08994 * 109.47299 * 299.99546 * 13 11 10 39 39 H 1.08996 * 109.46895 * 60.00212 * 13 11 10 40 40 H 0.97002 * 119.99592 * 0.02562 * 14 11 10 41 41 H 1.09005 * 109.46832 * 299.99667 * 17 15 14 42 42 H 1.08996 * 109.46926 * 59.99593 * 17 15 14 43 43 H 0.97001 * 120.00116 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2833 1.1119 0.0000 4 6 2.0538 2.4812 -0.0004 5 6 3.1220 3.3524 0.0002 6 6 4.4233 2.8699 0.0019 7 6 4.6680 1.5260 0.0024 8 6 3.6008 0.6238 0.0021 9 7 3.5204 -0.7316 0.0076 10 6 2.2713 -1.0956 0.0016 11 6 1.7881 -2.5231 0.0025 12 6 0.9952 -2.7923 1.2830 13 6 2.9896 -3.4683 -0.0615 14 7 0.9272 -2.7481 -1.1613 15 6 0.3764 -3.9607 -1.3677 16 8 0.5938 -4.8657 -0.5902 17 6 -0.5096 -4.1920 -2.5646 18 16 -1.0897 -5.9064 -2.5635 19 6 -2.0738 -5.8974 -4.0250 20 1 -2.1628 -4.9942 -4.6106 21 6 -2.7348 -7.0510 -4.4239 22 7 -2.6259 -8.1518 -3.7106 23 14 -3.7775 -7.0415 -5.9738 24 1 -2.9367 -7.4184 -7.1383 25 1 -4.8883 -8.0165 -5.8289 26 1 -4.3365 -5.6822 -6.1859 27 1 -0.3633 -0.0858 1.0241 28 1 -0.3634 0.9297 -0.4378 29 1 -0.3633 -0.8440 -0.5863 30 1 1.0432 2.8619 -0.0005 31 1 2.9452 4.4179 -0.0005 32 1 5.2508 3.5639 0.0020 33 1 5.6845 1.1613 0.0033 34 1 0.7507 -3.8528 1.3429 35 1 0.0754 -2.2075 1.2706 36 1 1.5946 -2.5082 2.1480 37 1 2.6401 -4.5007 -0.0604 38 1 3.5545 -3.2766 -0.9737 39 1 3.6301 -3.3009 0.8044 40 1 0.7537 -2.0243 -1.7833 41 1 -1.3654 -3.5184 -2.5187 42 1 0.0551 -4.0004 -3.4770 43 1 -3.0881 -8.9579 -3.9890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186785018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:38 Heat of formation + Delta-G solvation = 41.937843 kcal Electronic energy + Delta-G solvation = -25787.947095 eV Core-core repulsion = 22153.376272 eV Total energy + Delta-G solvation = -3634.570823 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -42.58747 -39.79762 -37.78335 -35.66459 -34.61551 -32.46962 -32.12595 -30.80578 -29.28436 -28.58967 -27.32768 -27.25454 -25.52471 -24.24556 -22.37192 -21.75965 -20.39636 -19.64571 -18.06807 -17.59583 -17.33342 -16.67947 -16.35531 -15.80226 -15.15001 -15.09319 -14.84047 -14.37806 -14.35170 -14.17833 -13.91864 -13.61348 -13.43221 -13.26733 -13.09060 -12.68199 -12.43553 -12.27013 -12.20262 -11.92107 -11.78935 -11.71225 -11.55226 -11.20200 -11.09000 -11.05796 -10.80273 -10.65535 -10.15555 -9.86367 -9.37400 -9.14168 -9.08380 -8.59837 -8.36554 -8.29494 -6.54770 -6.25852 -3.96676 0.63333 1.23997 2.24666 2.34718 2.94568 2.96801 3.19579 3.24342 3.27793 3.54663 3.62125 3.80374 4.11100 4.16291 4.36004 4.65223 4.69791 4.77875 4.81216 4.90304 5.03984 5.07294 5.09615 5.11960 5.14694 5.26698 5.44232 5.50125 5.60303 5.68317 5.79614 5.81912 5.83660 5.98583 6.05848 6.12433 6.18101 6.22200 6.25490 6.40861 6.48579 6.60485 6.78248 7.50919 7.55769 7.64394 8.30929 8.46522 9.19723 10.81479 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022408 B = 0.002444 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.267169 B =11453.894386 C =12052.543226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.485 5.485 3 C 0.047 3.953 4 C -0.110 4.110 5 C -0.103 4.103 6 C -0.131 4.131 7 C -0.061 4.061 8 C 0.045 3.955 9 N -0.473 5.473 10 C 0.283 3.717 11 C 0.259 3.741 12 C -0.164 4.164 13 C -0.148 4.148 14 N -0.737 5.737 15 C 0.540 3.460 16 O -0.504 6.504 17 C -0.154 4.154 18 S -0.055 6.055 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.396 0.604 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.335 23.078 8.702 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.174 5.174 3 C -0.062 4.062 4 C -0.131 4.131 5 C -0.123 4.123 6 C -0.151 4.151 7 C -0.081 4.081 8 C -0.074 4.074 9 N -0.192 5.192 10 C 0.017 3.983 11 C 0.171 3.829 12 C -0.223 4.223 13 C -0.206 4.206 14 N -0.394 5.394 15 C 0.327 3.673 16 O -0.377 6.377 17 C -0.305 4.305 18 S 0.172 5.828 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.195 20.822 10.037 25.264 hybrid contribution -1.816 2.118 -2.266 3.595 sum 8.379 22.941 7.771 25.629 Atomic orbital electron populations 1.22188 0.75911 1.04928 1.04101 1.45148 1.07248 1.04895 1.60141 1.18924 0.91247 0.89358 1.06646 1.19945 0.99733 0.88724 1.04678 1.20881 0.91980 0.99220 1.00192 1.20643 0.97022 0.94799 1.02671 1.20039 0.97461 0.91529 0.99041 1.19112 0.92283 0.90165 1.05851 1.70422 1.16910 1.10636 1.21261 1.23542 0.85525 0.89974 0.99284 1.18659 0.91836 0.84899 0.87521 1.22335 0.99388 1.05608 0.94933 1.22056 0.95276 1.00111 1.03169 1.46318 1.51648 1.13852 1.27562 1.20256 0.79365 0.81120 0.86573 1.90658 1.59301 1.41878 1.45912 1.23554 1.00899 1.08236 0.97809 1.85384 1.61268 1.01196 1.34965 1.22859 1.34367 1.00072 1.11207 0.90961 1.24988 0.96300 0.94578 0.97682 1.70011 1.41230 1.01038 1.37918 0.86171 0.79434 0.78091 0.81821 1.20242 1.20731 1.19731 0.90256 0.89445 0.88949 0.86097 0.85335 0.85375 0.85312 0.88321 0.92395 0.91557 0.89199 0.91809 0.91125 0.77021 0.89280 0.89148 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 9.56 59.85 0.57 1.10 16 2 N -0.49 -5.15 3.21 -118.50 -0.38 -5.53 16 3 C 0.05 0.53 6.87 -83.99 -0.58 -0.04 16 4 C -0.11 -0.96 10.05 -39.50 -0.40 -1.36 16 5 C -0.10 -0.78 10.03 -39.52 -0.40 -1.17 16 6 C -0.13 -1.04 9.96 -39.97 -0.40 -1.44 16 7 C -0.06 -0.63 10.05 -39.61 -0.40 -1.02 16 8 C 0.04 0.57 7.23 -84.70 -0.61 -0.04 16 9 N -0.47 -6.64 10.48 -8.23 -0.09 -6.73 16 10 C 0.28 3.55 6.27 -154.82 -0.97 2.58 16 11 C 0.26 3.29 0.71 -132.97 -0.09 3.20 16 12 C -0.16 -1.97 8.11 37.16 0.30 -1.67 16 13 C -0.15 -2.03 7.83 37.16 0.29 -1.74 16 14 N -0.74 -9.60 4.08 -48.68 -0.20 -9.80 16 15 C 0.54 9.22 7.27 -10.99 -0.08 9.14 16 16 O -0.50 -10.15 12.15 5.56 0.07 -10.09 16 17 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 18 S -0.05 -1.42 20.57 -107.50 -2.21 -3.63 16 19 C -0.54 -14.90 9.50 30.94 0.29 -14.60 16 20 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.65 13.22 55.49 0.73 -24.91 16 23 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H 0.08 0.51 7.71 -51.93 -0.40 0.11 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.69 6.00 -51.93 -0.31 0.38 16 30 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 32 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.10 1.41 6.38 -51.93 -0.33 1.07 16 35 H 0.06 0.62 6.42 -51.93 -0.33 0.28 16 36 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 37 H 0.09 1.40 6.17 -51.93 -0.32 1.08 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.40 4.37 7.49 -40.82 -0.31 4.07 16 41 H 0.09 1.53 8.14 -51.91 -0.42 1.11 16 42 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -34.00 367.05 -9.68 -43.68 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.77 Total: 3.27 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -2.34 Total: -7.81 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.07 Total: -46.97 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.21 Total: -3.63 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.00 -9.68 -43.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186785018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.620 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds