Wall clock time and date at job start Tue Mar 31 2020 17:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38059 * 126.34979 * 2 1 4 4 C 1.38832 * 134.13618 * 359.97438 * 3 2 1 5 5 C 1.37849 * 119.68713 * 179.97438 * 4 3 2 6 6 C 1.38782 * 120.45363 * 359.97438 * 5 4 3 7 7 C 1.36600 * 120.66614 * 0.02562 * 6 5 4 8 8 C 1.39744 * 119.88954 * 359.95393 * 7 6 5 9 9 N 1.35784 * 133.60489 * 180.29767 * 8 7 6 10 10 C 1.30109 * 109.64204 * 180.12897 * 9 8 7 11 11 C 1.50703 * 124.94876 * 179.89000 * 10 9 8 12 12 C 1.52998 * 109.47017 * 117.09455 * 11 10 9 13 13 C 1.53006 * 109.46903 * 357.09728 * 11 10 9 14 14 N 1.46500 * 109.47429 * 237.09777 * 11 10 9 15 15 C 1.34774 * 120.00003 * 180.02562 * 14 11 10 16 16 O 1.21277 * 119.99898 * 359.97438 * 15 14 11 17 17 C 1.50701 * 119.99950 * 179.97438 * 15 14 11 18 18 S 1.80995 * 109.47152 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00194 * 179.97438 * 18 17 15 20 20 H 1.08010 * 119.99647 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00603 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99488 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00275 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47282 * 90.00196 * 23 21 19 25 25 H 1.48506 * 109.46844 * 210.00028 * 23 21 19 26 26 H 1.48502 * 109.47091 * 329.99470 * 23 21 19 27 27 H 1.09003 * 109.47102 * 265.21066 * 1 2 3 28 28 H 1.09002 * 109.47225 * 25.21556 * 1 2 3 29 29 H 1.09004 * 109.47134 * 145.21466 * 1 2 3 30 30 H 1.07996 * 120.15763 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.77686 * 179.97438 * 5 4 3 32 32 H 1.07999 * 119.67032 * 179.97438 * 6 5 4 33 33 H 1.07999 * 120.05875 * 179.97438 * 7 6 5 34 34 H 1.09000 * 109.47308 * 186.90342 * 12 11 10 35 35 H 1.09005 * 109.47185 * 66.90125 * 12 11 10 36 36 H 1.08998 * 109.47223 * 306.90544 * 12 11 10 37 37 H 1.09004 * 109.46663 * 179.97438 * 13 11 10 38 38 H 1.08994 * 109.47299 * 299.99546 * 13 11 10 39 39 H 1.08996 * 109.46895 * 60.00212 * 13 11 10 40 40 H 0.97002 * 119.99592 * 0.02562 * 14 11 10 41 41 H 1.09005 * 109.46832 * 299.99667 * 17 15 14 42 42 H 1.08996 * 109.46926 * 59.99593 * 17 15 14 43 43 H 0.97001 * 120.00116 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2833 1.1119 0.0000 4 6 2.0538 2.4812 -0.0004 5 6 3.1220 3.3524 0.0002 6 6 4.4233 2.8699 0.0019 7 6 4.6680 1.5260 0.0024 8 6 3.6008 0.6238 0.0021 9 7 3.5204 -0.7316 0.0076 10 6 2.2713 -1.0956 0.0016 11 6 1.7881 -2.5231 0.0025 12 6 0.9952 -2.7923 1.2830 13 6 2.9896 -3.4683 -0.0615 14 7 0.9272 -2.7481 -1.1613 15 6 0.3764 -3.9607 -1.3677 16 8 0.5938 -4.8657 -0.5902 17 6 -0.5096 -4.1920 -2.5646 18 16 -1.0897 -5.9064 -2.5635 19 6 -2.0738 -5.8974 -4.0250 20 1 -2.1628 -4.9942 -4.6106 21 6 -2.7348 -7.0510 -4.4239 22 7 -2.6259 -8.1518 -3.7106 23 14 -3.7775 -7.0415 -5.9738 24 1 -2.9367 -7.4184 -7.1383 25 1 -4.8883 -8.0165 -5.8289 26 1 -4.3365 -5.6822 -6.1859 27 1 -0.3633 -0.0858 1.0241 28 1 -0.3634 0.9297 -0.4378 29 1 -0.3633 -0.8440 -0.5863 30 1 1.0432 2.8619 -0.0005 31 1 2.9452 4.4179 -0.0005 32 1 5.2508 3.5639 0.0020 33 1 5.6845 1.1613 0.0033 34 1 0.7507 -3.8528 1.3429 35 1 0.0754 -2.2075 1.2706 36 1 1.5946 -2.5082 2.1480 37 1 2.6401 -4.5007 -0.0604 38 1 3.5545 -3.2766 -0.9737 39 1 3.6301 -3.3009 0.8044 40 1 0.7537 -2.0243 -1.7833 41 1 -1.3654 -3.5184 -2.5187 42 1 0.0551 -4.0004 -3.4770 43 1 -3.0881 -8.9579 -3.9890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186785018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:37 Heat of formation + Delta-G solvation = 20.941266 kcal Electronic energy + Delta-G solvation = -25788.857575 eV Core-core repulsion = 22153.376272 eV Total energy + Delta-G solvation = -3635.481303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.39878 -41.06136 -38.59189 -36.78597 -35.38641 -34.57612 -33.38984 -31.46365 -30.31357 -29.78920 -28.33594 -27.97324 -27.64486 -25.17285 -23.11476 -22.65726 -21.45496 -20.75819 -19.85935 -18.50201 -18.18434 -17.84572 -17.34001 -16.87136 -16.73691 -16.47982 -16.06928 -15.82786 -15.10985 -15.00103 -14.94254 -14.83863 -14.53170 -14.47306 -14.13883 -13.76316 -13.73419 -13.34969 -13.16163 -12.98375 -12.91382 -12.88017 -12.71128 -12.61693 -12.53089 -12.37429 -12.26364 -11.72862 -11.40076 -11.13833 -10.99215 -10.79750 -10.33240 -10.26462 -9.34430 -9.09396 -8.64219 -8.34221 -6.11011 -0.10721 0.55120 1.21010 1.41155 1.42361 1.49324 1.52714 1.56950 1.67084 2.18647 2.27792 2.84886 2.91234 3.00181 3.28454 3.37668 3.72049 3.74646 3.90725 3.95578 4.06685 4.13579 4.25298 4.29374 4.40332 4.47603 4.48510 4.51601 4.58478 4.60841 4.67543 4.73906 4.82954 4.85815 5.12783 5.18221 5.23093 5.31283 5.42821 5.45574 5.56251 5.58725 5.95506 6.01125 6.20306 6.34110 6.79244 7.07655 7.14044 8.74640 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022408 B = 0.002444 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.267169 B =11453.894386 C =12052.543226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.480 5.480 3 C 0.036 3.964 4 C -0.115 4.115 5 C -0.096 4.096 6 C -0.123 4.123 7 C -0.083 4.083 8 C 0.007 3.993 9 N -0.503 5.503 10 C 0.270 3.730 11 C 0.264 3.736 12 C -0.158 4.158 13 C -0.141 4.141 14 N -0.714 5.714 15 C 0.547 3.453 16 O -0.538 6.538 17 C -0.131 4.131 18 S -0.139 6.139 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.996 3.004 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.258 1.258 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.147 0.853 31 H 0.163 0.837 32 H 0.157 0.843 33 H 0.130 0.870 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.409 0.591 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.567 26.947 7.896 29.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.169 5.169 3 C -0.073 4.073 4 C -0.136 4.136 5 C -0.115 4.115 6 C -0.143 4.143 7 C -0.102 4.102 8 C -0.112 4.112 9 N -0.224 5.224 10 C 0.003 3.997 11 C 0.177 3.823 12 C -0.216 4.216 13 C -0.200 4.200 14 N -0.371 5.371 15 C 0.333 3.667 16 O -0.414 6.414 17 C -0.282 4.282 18 S 0.088 5.912 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.818 3.182 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.182 1.182 27 H 0.108 0.892 28 H 0.130 0.870 29 H 0.108 0.892 30 H 0.164 0.836 31 H 0.181 0.819 32 H 0.175 0.825 33 H 0.148 0.852 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.245 0.755 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.426 24.743 9.230 28.040 hybrid contribution -1.446 1.117 -1.947 2.671 sum 7.980 25.860 7.283 28.026 Atomic orbital electron populations 1.22446 0.74114 1.06194 1.05052 1.45223 1.08170 1.04145 1.59325 1.19254 0.90716 0.90382 1.06959 1.20340 1.01511 0.87630 1.04095 1.21366 0.91322 1.00845 0.97964 1.21041 0.98476 0.94180 1.00648 1.20287 0.97248 0.92471 1.00217 1.19536 0.93999 0.89947 1.07691 1.70310 1.17965 1.12024 1.22054 1.23167 0.85759 0.89922 1.00824 1.18540 0.91140 0.85323 0.87324 1.22250 1.00187 1.04265 0.94915 1.21942 0.95830 0.99161 1.03048 1.46007 1.50456 1.12769 1.27829 1.19904 0.79271 0.81835 0.85704 1.90668 1.60547 1.43299 1.46890 1.23382 1.02164 1.03311 0.99386 1.85531 1.62096 1.08026 1.35497 1.23205 1.34285 1.00616 1.11348 0.90016 1.26083 0.97647 0.94053 1.01289 1.70171 1.42538 1.01862 1.40070 0.84993 0.77434 0.78728 0.77081 1.19545 1.20343 1.18176 0.89199 0.86992 0.89168 0.83569 0.81911 0.82527 0.85196 0.90687 0.90752 0.90643 0.91313 0.92608 0.90536 0.75476 0.86870 0.87726 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 9.56 127.77 1.22 1.99 16 2 N -0.48 -9.39 3.21 -528.82 -1.70 -11.09 16 3 C 0.04 0.75 6.87 38.86 0.27 1.01 16 4 C -0.12 -1.62 10.05 22.32 0.22 -1.40 16 5 C -0.10 -1.07 10.03 22.31 0.22 -0.84 16 6 C -0.12 -1.61 9.96 22.02 0.22 -1.39 16 7 C -0.08 -1.62 10.05 22.25 0.22 -1.39 16 8 C 0.01 0.17 7.23 39.45 0.29 0.45 16 9 N -0.50 -14.24 10.48 -179.96 -1.89 -16.13 16 10 C 0.27 6.64 6.27 137.92 0.86 7.51 16 11 C 0.26 6.71 0.71 2.86 0.00 6.71 16 12 C -0.16 -3.77 8.11 71.98 0.58 -3.19 16 13 C -0.14 -4.05 7.83 71.98 0.56 -3.49 16 14 N -0.71 -18.13 4.08 -426.32 -1.74 -19.87 16 15 C 0.55 18.66 7.27 87.66 0.64 19.30 16 16 O -0.54 -22.39 12.15 -3.02 -0.04 -22.42 16 17 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16 18 S -0.14 -7.39 20.57 -56.49 -1.16 -8.55 16 19 C -0.55 -30.41 9.50 67.95 0.65 -29.77 16 20 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 21 C 0.01 0.79 5.49 84.86 0.47 1.26 16 22 N -0.91 -54.98 13.22 21.65 0.29 -54.69 16 23 Si 1.00 42.90 29.55 68.60 2.03 44.93 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 26 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 27 H 0.09 0.92 7.71 -2.39 -0.02 0.91 16 28 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 1.13 6.00 -2.38 -0.01 1.12 16 30 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 31 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 32 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 33 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.07 2.20 6.38 -2.39 -0.02 2.19 16 35 H 0.07 1.50 6.42 -2.38 -0.02 1.48 16 36 H 0.07 1.65 8.13 -2.39 -0.02 1.63 16 37 H 0.07 2.27 6.17 -2.39 -0.01 2.26 16 38 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.41 8.38 7.49 -92.71 -0.69 7.69 16 41 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 42 H 0.10 3.63 8.14 -2.40 -0.02 3.61 16 43 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -76.86 367.05 3.00 -73.86 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.34 Total: 21.68 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 6.87 Total: -7.71 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -5.04 Total: -101.78 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.04 Total: -22.42 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: -7.39 SS G_CDS: -1.16 Total: -8.55 kcal Total: -76.86 3.00 -73.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186785018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.797 kcal (2) G-P(sol) polarization free energy of solvation -76.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds