Wall clock time and date at job start Tue Mar 31 2020 17:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46753 * 2 1 4 4 H 1.08996 * 109.47084 * 54.99940 * 3 2 1 5 5 C 1.50701 * 109.47200 * 175.00082 * 3 2 1 6 6 H 1.08000 * 120.00017 * 119.99941 * 5 3 2 7 7 C 1.37884 * 119.99760 * 300.00107 * 5 3 2 8 8 N 1.31512 * 119.99991 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 119.99914 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47096 * 89.99680 * 9 7 5 11 11 H 1.48497 * 109.47297 * 210.00013 * 9 7 5 12 12 H 1.48506 * 109.47395 * 330.00006 * 9 7 5 13 13 O 1.45196 * 109.47267 * 294.99940 * 3 2 1 14 14 C 1.34757 * 117.00127 * 89.99750 * 13 3 2 15 15 O 1.21518 * 119.99887 * 0.02562 * 14 13 3 16 16 C 1.47386 * 119.99861 * 179.97438 * 14 13 3 17 17 C 1.36668 * 125.77865 * 180.02562 * 16 14 13 18 18 N 1.34775 * 106.83618 * 180.02562 * 17 16 14 19 19 C 1.46503 * 126.58556 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.46859 * 125.00459 * 19 18 17 21 21 C 1.38262 * 119.98980 * 90.00238 * 20 19 18 22 22 C 1.38227 * 120.05195 * 180.02562 * 21 20 19 23 23 C 1.38219 * 120.02402 * 0.25898 * 22 21 20 24 24 C 1.38438 * 119.97316 * 359.46494 * 23 22 21 25 25 F 1.35104 * 120.02417 * 180.25968 * 24 23 22 26 26 C 1.38177 * 119.98533 * 270.02010 * 20 19 18 27 27 N 1.40207 * 106.82809 * 0.26326 * 18 17 16 28 28 N 1.28757 * 108.38366 * 359.55159 * 27 18 17 29 29 H 1.08997 * 109.47165 * 299.99767 * 1 2 3 30 30 H 1.08999 * 109.46963 * 60.00415 * 1 2 3 31 31 H 1.09003 * 109.46679 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47165 * 240.00232 * 2 1 3 33 33 H 1.08993 * 109.47275 * 119.99827 * 2 1 3 34 34 H 0.96994 * 119.99909 * 179.97438 * 8 7 5 35 35 H 1.08004 * 126.58001 * 359.97438 * 17 16 14 36 36 H 1.08997 * 109.47271 * 4.99940 * 19 18 17 37 37 H 1.09003 * 109.47056 * 245.00281 * 19 18 17 38 38 H 1.07999 * 119.97792 * 359.97438 * 21 20 19 39 39 H 1.08002 * 119.98464 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.01020 * 179.72204 * 23 22 21 41 41 H 1.08000 * 120.01241 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4445 0.1238 6 1 4.1471 1.8891 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 3.4062 0.3376 2.1733 9 14 6.0049 0.8803 1.3812 10 1 6.4426 2.1133 2.0837 11 1 6.4391 -0.3107 2.1545 12 1 6.6131 0.8398 0.0270 13 8 1.6558 2.0917 -1.2407 14 6 0.4680 2.7279 -1.2560 15 8 -0.2276 2.7402 -0.2597 16 6 0.0130 3.4097 -2.4809 17 6 -1.1644 4.0880 -2.6275 18 7 -1.1910 4.5554 -3.8913 19 6 -2.2602 5.3443 -4.5083 20 6 -1.6850 6.6210 -5.0653 21 6 -1.2210 6.6596 -6.3672 22 6 -0.6926 7.8298 -6.8793 23 6 -0.6227 8.9612 -6.0886 24 6 -1.0922 8.9253 -4.7868 25 9 -1.0292 10.0322 -4.0146 26 6 -1.6211 7.7524 -4.2747 27 7 -0.0018 4.1359 -4.5043 28 7 0.6855 3.4692 -3.6435 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8293 -0.0608 2.9499 35 1 -1.9275 4.2228 -1.8752 36 1 -3.0148 5.5825 -3.7587 37 1 -2.7171 4.7697 -5.3140 38 1 -1.2706 5.7746 -6.9843 39 1 -0.3301 7.8586 -7.8963 40 1 -0.2057 9.8742 -6.4875 41 1 -1.9838 7.7220 -3.2579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188066129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:51 Heat of formation + Delta-G solvation = -10.488879 kcal Electronic energy + Delta-G solvation = -27295.313750 eV Core-core repulsion = 23092.256357 eV Total energy + Delta-G solvation = -4203.057393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.28412 -42.19059 -39.67244 -39.26000 -35.76120 -35.26678 -33.43546 -32.00092 -31.38849 -31.09260 -30.63247 -27.61715 -27.12007 -24.16432 -23.37274 -22.98095 -22.83143 -21.71458 -20.67989 -19.55034 -18.21596 -17.61227 -16.83583 -16.68726 -16.61159 -16.37302 -16.04961 -15.96027 -15.38842 -15.06659 -14.73984 -14.62283 -14.43651 -13.97378 -13.84409 -13.15049 -12.99331 -12.81368 -12.72290 -12.30622 -12.19453 -12.01193 -11.66410 -11.44107 -11.27623 -11.18317 -11.12012 -10.89527 -10.62223 -10.47699 -10.23765 -9.88556 -9.69260 -9.60646 -9.34542 -9.25856 -9.17634 -8.75597 -8.40594 -6.13667 -4.19638 0.46397 0.70125 1.10214 1.87062 1.97319 3.11290 3.29393 3.34337 3.38183 3.49752 3.59205 3.65711 3.98635 4.05805 4.30619 4.37378 4.42291 4.50663 4.58788 4.72331 4.85850 4.89447 5.18118 5.20557 5.24029 5.34524 5.52785 5.58588 5.77031 5.88517 6.01619 6.21034 6.26358 6.33975 6.35923 6.48991 6.90567 6.98165 7.20159 7.25212 7.65778 7.77553 7.91656 8.03755 8.20164 8.65250 8.93838 9.45064 10.93331 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.002451 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.102399 B =11420.392408 C =12142.561953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.049 0.951 5 C -0.518 4.518 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.334 6.334 14 C 0.542 3.458 15 O -0.514 6.514 16 C -0.070 4.070 17 C 0.091 3.909 18 N -0.366 5.366 19 C 0.167 3.833 20 C -0.089 4.089 21 C -0.092 4.092 22 C -0.092 4.092 23 C -0.140 4.140 24 C 0.096 3.904 25 F -0.137 7.137 26 C -0.132 4.132 27 N -0.065 5.065 28 N -0.176 5.176 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.043 0.957 33 H 0.110 0.890 34 H 0.266 0.734 35 H 0.207 0.793 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.306 14.180 -16.560 26.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.556 4.556 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.195 1.195 13 O -0.248 6.248 14 C 0.384 3.616 15 O -0.404 6.404 16 C -0.207 4.207 17 C -0.065 4.065 18 N -0.151 5.151 19 C 0.046 3.954 20 C -0.090 4.090 21 C -0.111 4.111 22 C -0.110 4.110 23 C -0.159 4.159 24 C 0.077 3.923 25 F -0.116 7.116 26 C -0.151 4.151 27 N -0.045 5.045 28 N -0.051 5.051 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.128 0.872 34 H 0.076 0.924 35 H 0.223 0.777 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.648 14.108 -17.304 26.702 hybrid contribution 0.203 0.265 1.287 1.330 sum -14.445 14.373 -16.017 25.919 Atomic orbital electron populations 1.21862 0.98435 0.99034 1.00669 1.22027 0.92619 0.99290 1.03490 1.20767 0.95184 0.88819 0.78393 0.93344 1.21062 0.89628 1.38737 1.06216 0.91163 1.24871 0.99228 0.94774 0.95058 1.69887 1.35347 1.38034 1.09487 0.86280 0.83936 0.77608 0.78384 1.20446 1.20994 1.19519 1.86643 1.32625 1.61638 1.43910 1.19344 0.81363 0.76276 0.84663 1.90815 1.56012 1.59559 1.33966 1.20746 0.95111 1.10051 0.94822 1.23322 0.99561 0.95591 0.88014 1.50514 1.17544 1.37796 1.09285 1.20822 0.85953 0.88652 0.99956 1.19509 1.01330 0.93582 0.94615 1.21178 0.96628 0.98528 0.94723 1.21063 0.97917 0.91785 1.00224 1.21295 1.01273 1.00644 0.92721 1.17629 1.01559 0.83358 0.89801 1.91530 1.94344 1.50989 1.74726 1.21059 1.01457 0.91705 1.00891 1.82028 0.90415 1.14609 1.17480 1.74842 1.22103 1.08780 0.99334 0.92755 0.95017 0.94789 0.93821 0.87233 0.92442 0.77667 0.86549 0.87030 0.84606 0.84419 0.84424 0.84449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.56 37.16 0.32 -2.82 16 2 C -0.14 -3.44 5.49 -26.73 -0.15 -3.58 16 3 C 0.22 5.98 2.25 -27.88 -0.06 5.92 16 4 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 5 C -0.52 -14.85 8.90 -34.44 -0.31 -15.16 16 6 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -25.27 11.29 55.43 0.63 -24.64 16 9 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 13 O -0.33 -8.40 9.81 -40.65 -0.40 -8.80 16 14 C 0.54 11.79 6.41 34.45 0.22 12.01 16 15 O -0.51 -11.54 14.05 -19.28 -0.27 -11.81 16 16 C -0.07 -1.24 7.02 -83.57 -0.59 -1.83 16 17 C 0.09 1.12 11.27 -16.83 -0.19 0.93 16 18 N -0.37 -3.98 3.68 -62.23 -0.23 -4.21 16 19 C 0.17 0.97 6.66 -5.19 -0.03 0.94 16 20 C -0.09 -0.64 5.34 -104.64 -0.56 -1.20 16 21 C -0.09 -0.62 9.70 -39.58 -0.38 -1.01 16 22 C -0.09 -0.58 10.04 -39.59 -0.40 -0.98 16 23 C -0.14 -1.02 10.03 -39.51 -0.40 -1.42 16 24 C 0.10 0.84 7.30 -39.42 -0.29 0.56 16 25 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 26 C -0.13 -1.04 9.68 -39.52 -0.38 -1.43 16 27 N -0.06 -0.96 13.64 60.35 0.82 -0.14 16 28 N -0.18 -3.24 12.39 32.83 0.41 -2.84 16 29 H 0.05 1.22 7.79 -51.93 -0.40 0.82 16 30 H 0.03 0.67 6.06 -51.93 -0.31 0.36 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.11 2.97 5.95 -51.93 -0.31 2.66 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.21 1.76 8.06 -52.48 -0.42 1.33 16 36 H 0.12 0.32 8.03 -51.93 -0.42 -0.10 16 37 H 0.11 0.42 8.09 -51.93 -0.42 0.00 16 38 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -34.22 362.70 -6.59 -40.80 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.74 Total: -1.50 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -3.29 Total: -7.42 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 1.63 Total: -31.83 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.67 Total: -20.62 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.22 -6.59 -40.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188066129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.315 kcal (2) G-P(sol) polarization free energy of solvation -34.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds