Wall clock time and date at job start Tue Mar 31 2020 17:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46753 * 2 1 4 4 H 1.08996 * 109.47084 * 54.99940 * 3 2 1 5 5 C 1.50701 * 109.47200 * 175.00082 * 3 2 1 6 6 H 1.08000 * 120.00017 * 119.99941 * 5 3 2 7 7 C 1.37884 * 119.99760 * 300.00107 * 5 3 2 8 8 N 1.31512 * 119.99991 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 119.99914 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47096 * 89.99680 * 9 7 5 11 11 H 1.48497 * 109.47297 * 210.00013 * 9 7 5 12 12 H 1.48506 * 109.47395 * 330.00006 * 9 7 5 13 13 O 1.45196 * 109.47267 * 294.99940 * 3 2 1 14 14 C 1.34757 * 117.00127 * 89.99750 * 13 3 2 15 15 O 1.21518 * 119.99887 * 0.02562 * 14 13 3 16 16 C 1.47386 * 119.99861 * 179.97438 * 14 13 3 17 17 C 1.36668 * 125.77865 * 180.02562 * 16 14 13 18 18 N 1.34775 * 106.83618 * 180.02562 * 17 16 14 19 19 C 1.46503 * 126.58556 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.46859 * 125.00459 * 19 18 17 21 21 C 1.38262 * 119.98980 * 90.00238 * 20 19 18 22 22 C 1.38227 * 120.05195 * 180.02562 * 21 20 19 23 23 C 1.38219 * 120.02402 * 0.25898 * 22 21 20 24 24 C 1.38438 * 119.97316 * 359.46494 * 23 22 21 25 25 F 1.35104 * 120.02417 * 180.25968 * 24 23 22 26 26 C 1.38177 * 119.98533 * 270.02010 * 20 19 18 27 27 N 1.40207 * 106.82809 * 0.26326 * 18 17 16 28 28 N 1.28757 * 108.38366 * 359.55159 * 27 18 17 29 29 H 1.08997 * 109.47165 * 299.99767 * 1 2 3 30 30 H 1.08999 * 109.46963 * 60.00415 * 1 2 3 31 31 H 1.09003 * 109.46679 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47165 * 240.00232 * 2 1 3 33 33 H 1.08993 * 109.47275 * 119.99827 * 2 1 3 34 34 H 0.96994 * 119.99909 * 179.97438 * 8 7 5 35 35 H 1.08004 * 126.58001 * 359.97438 * 17 16 14 36 36 H 1.08997 * 109.47271 * 4.99940 * 19 18 17 37 37 H 1.09003 * 109.47056 * 245.00281 * 19 18 17 38 38 H 1.07999 * 119.97792 * 359.97438 * 21 20 19 39 39 H 1.08002 * 119.98464 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.01020 * 179.72204 * 23 22 21 41 41 H 1.08000 * 120.01241 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4445 0.1238 6 1 4.1471 1.8891 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 3.4062 0.3376 2.1733 9 14 6.0049 0.8803 1.3812 10 1 6.4426 2.1133 2.0837 11 1 6.4391 -0.3107 2.1545 12 1 6.6131 0.8398 0.0270 13 8 1.6558 2.0917 -1.2407 14 6 0.4680 2.7279 -1.2560 15 8 -0.2276 2.7402 -0.2597 16 6 0.0130 3.4097 -2.4809 17 6 -1.1644 4.0880 -2.6275 18 7 -1.1910 4.5554 -3.8913 19 6 -2.2602 5.3443 -4.5083 20 6 -1.6850 6.6210 -5.0653 21 6 -1.2210 6.6596 -6.3672 22 6 -0.6926 7.8298 -6.8793 23 6 -0.6227 8.9612 -6.0886 24 6 -1.0922 8.9253 -4.7868 25 9 -1.0292 10.0322 -4.0146 26 6 -1.6211 7.7524 -4.2747 27 7 -0.0018 4.1359 -4.5043 28 7 0.6855 3.4692 -3.6435 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8293 -0.0608 2.9499 35 1 -1.9275 4.2228 -1.8752 36 1 -3.0148 5.5825 -3.7587 37 1 -2.7171 4.7697 -5.3140 38 1 -1.2706 5.7746 -6.9843 39 1 -0.3301 7.8586 -7.8963 40 1 -0.2057 9.8742 -6.4875 41 1 -1.9838 7.7220 -3.2579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188066129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:50 Heat of formation + Delta-G solvation = -30.943939 kcal Electronic energy + Delta-G solvation = -27296.200748 eV Core-core repulsion = 23092.256357 eV Total energy + Delta-G solvation = -4203.944391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.96346 -43.30295 -41.08822 -40.15747 -37.61283 -36.10199 -35.45203 -33.35641 -32.77550 -31.96514 -31.50425 -29.33814 -28.12304 -25.79398 -24.71271 -23.96905 -23.69689 -22.56087 -22.23778 -21.27322 -19.45604 -18.65741 -18.32710 -17.89865 -17.42330 -17.37933 -17.16942 -16.95820 -16.64310 -16.48642 -16.36896 -15.77726 -15.16896 -14.90400 -14.74629 -14.66406 -14.43260 -14.00517 -13.68140 -13.38544 -13.32443 -13.28366 -13.12133 -13.06104 -12.81279 -12.79683 -12.54092 -12.36833 -12.13706 -12.08573 -11.75123 -11.56543 -11.41636 -11.36263 -10.80696 -10.53143 -10.41842 -10.13194 -9.76405 -8.26464 -6.42201 -0.13400 0.09079 0.15081 0.49476 1.15741 1.41899 1.43514 1.55296 1.96503 2.05254 2.41640 2.56105 3.02731 3.05143 3.23226 3.41130 3.60071 3.79531 3.86237 3.90812 4.02189 4.11424 4.26223 4.38439 4.41465 4.43126 4.44565 4.54086 4.69150 4.75891 4.86582 5.00322 5.06410 5.11989 5.24462 5.26490 5.35248 5.38040 5.38530 5.52401 5.69004 5.83290 5.94568 6.11876 6.58700 6.79402 7.04075 7.28597 8.80430 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.002451 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.102399 B =11420.392408 C =12142.561953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.225 3.775 4 H 0.015 0.985 5 C -0.552 4.552 6 H 0.059 0.941 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.978 3.022 10 H -0.272 1.272 11 H -0.271 1.271 12 H -0.268 1.268 13 O -0.354 6.354 14 C 0.539 3.461 15 O -0.529 6.529 16 C -0.111 4.111 17 C 0.128 3.872 18 N -0.344 5.344 19 C 0.156 3.844 20 C -0.097 4.097 21 C -0.096 4.096 22 C -0.095 4.095 23 C -0.146 4.146 24 C 0.066 3.934 25 F -0.152 7.152 26 C -0.139 4.139 27 N -0.070 5.070 28 N -0.218 5.218 29 H 0.043 0.957 30 H 0.034 0.966 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.271 0.729 35 H 0.249 0.751 36 H 0.158 0.842 37 H 0.142 0.858 38 H 0.151 0.849 39 H 0.161 0.839 40 H 0.150 0.850 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.700 14.496 -17.797 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C 0.172 3.828 4 H 0.033 0.967 5 C -0.589 4.589 6 H 0.077 0.923 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.801 3.199 10 H -0.197 1.197 11 H -0.196 1.196 12 H -0.192 1.192 13 O -0.270 6.270 14 C 0.382 3.618 15 O -0.419 6.419 16 C -0.249 4.249 17 C -0.030 4.030 18 N -0.128 5.128 19 C 0.038 3.962 20 C -0.098 4.098 21 C -0.115 4.115 22 C -0.113 4.113 23 C -0.165 4.165 24 C 0.047 3.953 25 F -0.130 7.130 26 C -0.158 4.158 27 N -0.051 5.051 28 N -0.093 5.093 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.265 0.735 36 H 0.176 0.824 37 H 0.159 0.841 38 H 0.169 0.831 39 H 0.179 0.821 40 H 0.167 0.833 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.078 14.447 -18.576 28.501 hybrid contribution 0.496 0.303 1.554 1.660 sum -15.581 14.750 -17.022 27.387 Atomic orbital electron populations 1.21709 0.95875 1.00765 1.00277 1.21872 0.94891 0.97834 1.02223 1.20470 0.94519 0.89492 0.78303 0.96701 1.21309 0.90700 1.40076 1.06842 0.92298 1.25732 1.04074 0.93814 0.94295 1.69988 1.37300 1.37839 1.09772 0.85255 0.77923 0.78158 0.78518 1.19714 1.19628 1.19227 1.86619 1.34950 1.62646 1.42745 1.19916 0.80047 0.75682 0.86121 1.90782 1.55960 1.60175 1.34965 1.20488 0.97632 1.13081 0.93653 1.23819 0.97959 0.92424 0.88765 1.50862 1.17039 1.36327 1.08590 1.21485 0.84848 0.87732 1.02126 1.19649 1.01630 0.93779 0.94762 1.21510 0.95848 0.99163 0.94948 1.21387 0.97396 0.91297 1.01199 1.21552 1.00887 1.01659 0.92370 1.17983 1.03219 0.83531 0.90563 1.91489 1.94637 1.51746 1.75174 1.21270 1.01285 0.91695 1.01575 1.81903 0.91767 1.14304 1.17167 1.74817 1.23887 1.10506 1.00080 0.93795 0.94642 0.91906 0.94094 0.89231 0.91919 0.73494 0.82428 0.84065 0.83129 0.82139 0.83255 0.83436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.56 71.98 0.62 -5.05 16 2 C -0.13 -6.74 5.49 30.60 0.17 -6.57 16 3 C 0.23 12.72 2.25 29.85 0.07 12.79 16 4 H 0.02 0.94 7.16 -2.39 -0.02 0.92 16 5 C -0.55 -32.76 8.90 25.60 0.23 -32.53 16 6 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 7 C 0.02 1.18 5.29 84.66 0.45 1.63 16 8 N -0.91 -52.65 11.29 21.45 0.24 -52.40 16 9 Si 0.98 44.32 29.54 68.60 2.03 46.35 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 O -0.35 -18.58 9.81 -56.68 -0.56 -19.14 16 14 C 0.54 23.91 6.41 70.23 0.45 24.36 16 15 O -0.53 -24.05 14.05 19.78 0.28 -23.78 16 16 C -0.11 -3.89 7.02 40.79 0.29 -3.61 16 17 C 0.13 2.79 11.27 83.87 0.95 3.73 16 18 N -0.34 -6.36 3.68 -350.79 -1.29 -7.65 16 19 C 0.16 1.14 6.66 85.63 0.57 1.71 16 20 C -0.10 -1.11 5.34 -19.87 -0.11 -1.21 16 21 C -0.10 -1.05 9.70 22.27 0.22 -0.83 16 22 C -0.10 -1.01 10.04 22.26 0.22 -0.79 16 23 C -0.15 -1.96 10.03 22.31 0.22 -1.73 16 24 C 0.07 1.12 7.30 22.37 0.16 1.28 16 25 F -0.15 -3.07 17.27 44.97 0.78 -2.29 16 26 C -0.14 -1.94 9.68 22.31 0.22 -1.73 16 27 N -0.07 -1.99 13.64 37.02 0.50 -1.49 16 28 N -0.22 -8.03 12.39 -50.03 -0.62 -8.65 16 29 H 0.04 1.99 7.79 -2.39 -0.02 1.97 16 30 H 0.03 1.50 6.06 -2.39 -0.01 1.48 16 31 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 32 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.09 4.99 5.95 -2.39 -0.01 4.97 16 34 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 35 H 0.25 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.16 -0.05 8.03 -2.39 -0.02 -0.07 16 37 H 0.14 0.34 8.09 -2.39 -0.02 0.32 16 38 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 40 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 41 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -78.69 362.70 7.15 -71.55 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.07 Total: 6.04 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 4.72 Total: -8.54 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -1.16 Total: -70.18 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.28 Total: -42.92 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.78 Total: -2.29 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -78.69 7.15 -71.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188066129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.602 kcal (2) G-P(sol) polarization free energy of solvation -78.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds