Wall clock time and date at job start Tue Mar 31 2020 18:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81397 * 102.99906 * 2 1 4 4 C 1.50698 * 109.47104 * 180.02562 * 3 2 1 5 5 N 1.30111 * 124.94996 * 270.14546 * 4 3 2 6 6 C 1.35784 * 109.64185 * 180.26589 * 5 4 3 7 7 C 1.39741 * 133.60180 * 179.74828 * 6 5 4 8 8 C 1.36602 * 119.88973 * 180.02562 * 7 6 5 9 9 C 1.38775 * 120.66562 * 359.95376 * 8 7 6 10 10 C 1.37857 * 120.45355 * 0.02562 * 9 8 7 11 11 C 1.38827 * 119.68909 * 359.97438 * 10 9 8 12 12 N 1.36039 * 124.95083 * 90.00172 * 4 3 2 13 13 C 1.46500 * 126.34622 * 0.02562 * 12 4 3 14 14 C 1.50703 * 109.47014 * 269.68703 * 13 12 4 15 15 O 1.21290 * 119.99977 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00516 * 180.02562 * 14 13 12 17 17 C 1.46499 * 120.00694 * 180.02562 * 16 14 13 18 18 H 1.09007 * 109.46342 * 324.99575 * 17 16 14 19 19 C 1.52998 * 109.47185 * 84.99510 * 17 16 14 20 20 C 1.50701 * 109.47260 * 204.99997 * 17 16 14 21 21 H 1.08002 * 119.99761 * 359.97438 * 20 17 16 22 22 C 1.37871 * 119.99694 * 180.27562 * 20 17 16 23 23 N 1.31514 * 120.00482 * 359.71466 * 22 20 17 24 24 Si 1.86801 * 119.99746 * 179.72062 * 22 20 17 25 25 H 1.48504 * 109.47266 * 60.00049 * 24 22 20 26 26 H 1.48504 * 109.46970 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47383 * 299.99456 * 24 22 20 28 28 H 1.09002 * 109.46879 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47115 * 299.99478 * 1 2 3 30 30 H 1.09001 * 109.47472 * 59.99803 * 1 2 3 31 31 H 1.09000 * 109.46875 * 60.00216 * 3 2 1 32 32 H 1.09003 * 109.47333 * 300.00396 * 3 2 1 33 33 H 1.08003 * 120.05454 * 0.02562 * 7 6 5 34 34 H 1.07997 * 119.66621 * 179.97438 * 8 7 6 35 35 H 1.08000 * 119.77608 * 180.02562 * 9 8 7 36 36 H 1.07999 * 120.15210 * 179.97438 * 10 9 8 37 37 H 1.09003 * 109.47256 * 149.69158 * 13 12 4 38 38 H 1.08994 * 109.47582 * 29.68090 * 13 12 4 39 39 H 0.97006 * 119.99365 * 359.97438 * 16 14 13 40 40 H 1.09005 * 109.46870 * 300.00240 * 19 17 16 41 41 H 1.08998 * 109.47156 * 60.00179 * 19 17 16 42 42 H 1.09004 * 109.46783 * 180.02562 * 19 17 16 43 43 H 0.96995 * 120.00207 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9373 -0.0006 5 7 4.4608 2.0186 1.0655 6 6 5.7612 2.1730 0.7065 7 6 6.9499 2.3130 1.4276 8 6 8.1357 2.4548 0.7645 9 6 8.1746 2.4605 -0.6227 10 6 7.0146 2.3235 -1.3548 11 6 5.8001 2.1783 -0.6980 12 7 4.4933 2.0253 -1.1160 13 6 4.0259 1.9731 -2.5034 14 6 4.0325 0.5442 -2.9823 15 8 4.3928 -0.3432 -2.2380 16 7 3.6392 0.2523 -4.2378 17 6 3.6451 -1.1368 -4.7032 18 1 4.4869 -1.6660 -4.2563 19 6 2.3382 -1.8180 -4.2922 20 6 3.7750 -1.1632 -6.2043 21 1 3.8456 -0.2378 -6.7566 22 6 3.7974 -2.3686 -6.8732 23 7 3.7111 -3.4956 -6.2007 24 14 3.9505 -2.4011 -8.7346 25 1 5.2190 -1.7430 -9.1386 26 1 3.9517 -3.8091 -9.2066 27 1 2.8031 -1.6772 -9.3384 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8031 2.2370 0.8900 32 1 1.8030 2.2371 -0.8900 33 1 6.9312 2.3092 2.5075 34 1 9.0522 2.5632 1.3254 35 1 9.1202 2.5731 -1.1323 36 1 7.0504 2.3290 -2.4342 37 1 4.6866 2.5700 -3.1322 38 1 3.0126 2.3706 -2.5607 39 1 3.3514 0.9620 -4.8332 40 1 2.2444 -1.7988 -3.2064 41 1 1.4965 -1.2887 -4.7390 42 1 2.3429 -2.8517 -4.6381 43 1 3.7265 -4.3436 -6.6714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194654654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:39 Heat of formation + Delta-G solvation = 42.160937 kcal Electronic energy + Delta-G solvation = -26293.853436 eV Core-core repulsion = 22659.292287 eV Total energy + Delta-G solvation = -3634.561149 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.19811 -38.92372 -37.35055 -34.96018 -33.99275 -32.45932 -31.64927 -30.53034 -29.28940 -29.01523 -27.58961 -27.07288 -25.27863 -22.31128 -22.14351 -21.59106 -20.11199 -19.51050 -17.64814 -17.43619 -17.05787 -16.41620 -15.91912 -15.45085 -15.20353 -14.88897 -14.78259 -14.34627 -14.12250 -13.86049 -13.79403 -13.74135 -13.65841 -13.09767 -12.94986 -12.50042 -12.41373 -12.25809 -11.93379 -11.69068 -11.50520 -11.43895 -11.13941 -10.99003 -10.75105 -10.54636 -10.37086 -10.26726 -9.96702 -9.90197 -9.18685 -9.09175 -8.59494 -8.21248 -8.00753 -7.99136 -7.57936 -6.15856 -4.26136 0.79021 1.52933 1.65103 2.47385 2.49831 2.98523 3.17501 3.21838 3.27766 3.28320 3.85862 3.97070 3.98407 4.31506 4.36287 4.65806 4.72730 4.92065 5.00385 5.04814 5.06957 5.10517 5.16061 5.17617 5.32150 5.43954 5.48135 5.60865 5.65132 5.76118 6.15538 6.48542 6.54976 6.57648 6.79872 6.91316 6.96398 7.05384 7.12564 7.39008 7.49521 7.63364 7.87156 7.89956 8.11524 8.54359 8.71314 8.99728 9.41267 10.89741 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.003814 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.069576 B = 7338.781817 C = 9197.994012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.189 6.189 3 C -0.023 4.023 4 C 0.305 3.695 5 N -0.478 5.478 6 C 0.048 3.952 7 C -0.065 4.065 8 C -0.131 4.131 9 C -0.104 4.104 10 C -0.104 4.104 11 C 0.066 3.934 12 N -0.459 5.459 13 C 0.083 3.917 14 C 0.483 3.517 15 O -0.518 6.518 16 N -0.705 5.705 17 C 0.269 3.731 18 H 0.048 0.952 19 C -0.146 4.146 20 C -0.537 4.537 21 H 0.060 0.940 22 C 0.068 3.932 23 N -0.881 5.881 24 Si 0.901 3.099 25 H -0.276 1.276 26 H -0.285 1.285 27 H -0.276 1.276 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.387 0.613 40 H 0.020 0.980 41 H 0.024 0.976 42 H 0.089 0.911 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.272 14.836 10.340 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.036 5.964 3 C -0.173 4.173 4 C 0.040 3.960 5 N -0.199 5.199 6 C -0.071 4.071 7 C -0.084 4.084 8 C -0.152 4.152 9 C -0.124 4.124 10 C -0.124 4.124 11 C -0.044 4.044 12 N -0.147 5.147 13 C -0.044 4.044 14 C 0.265 3.735 15 O -0.394 6.394 16 N -0.354 5.354 17 C 0.168 3.832 18 H 0.065 0.935 19 C -0.204 4.204 20 C -0.575 4.575 21 H 0.078 0.922 22 C -0.136 4.136 23 N -0.519 5.519 24 Si 0.728 3.272 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.202 1.202 28 H 0.123 0.877 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.133 0.867 32 H 0.115 0.885 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.219 0.781 40 H 0.039 0.961 41 H 0.043 0.957 42 H 0.107 0.893 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.695 13.031 11.544 17.423 hybrid contribution -0.767 1.222 -2.359 2.765 sum -1.462 14.253 9.185 17.020 Atomic orbital electron populations 1.23497 0.95524 1.06886 1.04627 1.88156 1.05181 1.05244 1.97867 1.21720 0.89554 0.99189 1.06802 1.22185 0.93344 0.99293 0.81182 1.70345 1.01233 1.21601 1.26706 1.18978 0.92110 1.05729 0.90296 1.19957 0.89281 0.99631 0.99579 1.20594 0.97361 1.02858 0.94339 1.20847 0.97133 1.00431 0.93970 1.19987 0.89337 1.03512 0.99601 1.18788 0.85270 1.05192 0.95129 1.44579 1.05434 1.58633 1.06089 1.21808 1.02999 0.98748 0.80806 1.20342 0.79903 0.89587 0.83689 1.90770 1.46731 1.47537 1.54367 1.46464 1.64956 1.12424 1.11586 1.18732 0.95371 0.75442 0.93658 0.93463 1.22055 0.97512 1.03867 0.97000 1.21160 1.52570 0.92939 0.90849 0.92188 1.24875 0.94627 0.95345 0.98744 1.69892 1.48750 0.97544 1.35669 0.86522 0.78660 0.77195 0.84784 1.20185 1.21092 1.20168 0.87689 0.90576 0.90453 0.86716 0.88454 0.85533 0.85527 0.85370 0.86069 0.86739 0.86883 0.78057 0.96141 0.95681 0.89286 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 10.76 101.05 1.09 -0.29 16 2 S -0.19 -2.84 22.36 -107.50 -2.40 -5.24 16 3 C -0.02 -0.29 6.23 36.00 0.22 -0.06 16 4 C 0.31 4.77 7.11 -154.82 -1.10 3.67 16 5 N -0.48 -8.21 11.27 -8.23 -0.09 -8.30 16 6 C 0.05 0.79 7.23 -84.70 -0.61 0.18 16 7 C -0.06 -0.88 10.05 -39.61 -0.40 -1.28 16 8 C -0.13 -1.52 9.96 -39.97 -0.40 -1.92 16 9 C -0.10 -1.24 10.03 -39.52 -0.40 -1.63 16 10 C -0.10 -1.45 10.05 -39.50 -0.40 -1.85 16 11 C 0.07 1.06 6.87 -83.99 -0.58 0.49 16 12 N -0.46 -7.11 2.29 -112.44 -0.26 -7.37 16 13 C 0.08 1.11 6.41 -5.19 -0.03 1.07 16 14 C 0.48 8.98 7.86 -10.99 -0.09 8.89 16 15 O -0.52 -12.16 16.09 5.55 0.09 -12.07 16 16 N -0.71 -13.56 5.07 -54.93 -0.28 -13.84 16 17 C 0.27 6.62 2.56 -69.08 -0.18 6.44 16 18 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 19 C -0.15 -3.53 9.26 37.16 0.34 -3.19 16 20 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 21 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 22 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 23 N -0.88 -24.55 11.31 55.43 0.63 -23.92 16 24 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 28 H 0.10 1.04 8.14 -51.92 -0.42 0.62 16 29 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 30 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.11 1.18 8.14 -51.92 -0.42 0.75 16 32 H 0.10 0.94 7.00 -51.92 -0.36 0.58 16 33 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 34 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.11 1.12 6.98 -51.93 -0.36 0.76 16 39 H 0.39 6.17 8.54 -40.82 -0.35 5.82 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 43 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -34.28 379.12 -10.52 -44.80 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.97 Total: 6.91 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -2.92 Total: -1.88 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.00 Total: -53.43 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -2.40 Total: -5.24 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.28 -10.52 -44.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194654654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.962 kcal (2) G-P(sol) polarization free energy of solvation -34.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds