Wall clock time and date at job start Tue Mar 31 2020 18:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81397 * 102.99906 * 2 1 4 4 C 1.50698 * 109.47104 * 180.02562 * 3 2 1 5 5 N 1.30111 * 124.94996 * 270.14546 * 4 3 2 6 6 C 1.35784 * 109.64185 * 180.26589 * 5 4 3 7 7 C 1.39741 * 133.60180 * 179.74828 * 6 5 4 8 8 C 1.36602 * 119.88973 * 180.02562 * 7 6 5 9 9 C 1.38775 * 120.66562 * 359.95376 * 8 7 6 10 10 C 1.37857 * 120.45355 * 0.02562 * 9 8 7 11 11 C 1.38827 * 119.68909 * 359.97438 * 10 9 8 12 12 N 1.36039 * 124.95083 * 90.00172 * 4 3 2 13 13 C 1.46500 * 126.34622 * 0.02562 * 12 4 3 14 14 C 1.50703 * 109.47014 * 269.68703 * 13 12 4 15 15 O 1.21290 * 119.99977 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00516 * 180.02562 * 14 13 12 17 17 C 1.46499 * 120.00694 * 180.02562 * 16 14 13 18 18 H 1.09007 * 109.46342 * 324.99575 * 17 16 14 19 19 C 1.52998 * 109.47185 * 84.99510 * 17 16 14 20 20 C 1.50701 * 109.47260 * 204.99997 * 17 16 14 21 21 H 1.08002 * 119.99761 * 359.97438 * 20 17 16 22 22 C 1.37871 * 119.99694 * 180.27562 * 20 17 16 23 23 N 1.31514 * 120.00482 * 359.71466 * 22 20 17 24 24 Si 1.86801 * 119.99746 * 179.72062 * 22 20 17 25 25 H 1.48504 * 109.47266 * 60.00049 * 24 22 20 26 26 H 1.48504 * 109.46970 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47383 * 299.99456 * 24 22 20 28 28 H 1.09002 * 109.46879 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47115 * 299.99478 * 1 2 3 30 30 H 1.09001 * 109.47472 * 59.99803 * 1 2 3 31 31 H 1.09000 * 109.46875 * 60.00216 * 3 2 1 32 32 H 1.09003 * 109.47333 * 300.00396 * 3 2 1 33 33 H 1.08003 * 120.05454 * 0.02562 * 7 6 5 34 34 H 1.07997 * 119.66621 * 179.97438 * 8 7 6 35 35 H 1.08000 * 119.77608 * 180.02562 * 9 8 7 36 36 H 1.07999 * 120.15210 * 179.97438 * 10 9 8 37 37 H 1.09003 * 109.47256 * 149.69158 * 13 12 4 38 38 H 1.08994 * 109.47582 * 29.68090 * 13 12 4 39 39 H 0.97006 * 119.99365 * 359.97438 * 16 14 13 40 40 H 1.09005 * 109.46870 * 300.00240 * 19 17 16 41 41 H 1.08998 * 109.47156 * 60.00179 * 19 17 16 42 42 H 1.09004 * 109.46783 * 180.02562 * 19 17 16 43 43 H 0.96995 * 120.00207 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9373 -0.0006 5 7 4.4608 2.0186 1.0655 6 6 5.7612 2.1730 0.7065 7 6 6.9499 2.3130 1.4276 8 6 8.1357 2.4548 0.7645 9 6 8.1746 2.4605 -0.6227 10 6 7.0146 2.3235 -1.3548 11 6 5.8001 2.1783 -0.6980 12 7 4.4933 2.0253 -1.1160 13 6 4.0259 1.9731 -2.5034 14 6 4.0325 0.5442 -2.9823 15 8 4.3928 -0.3432 -2.2380 16 7 3.6392 0.2523 -4.2378 17 6 3.6451 -1.1368 -4.7032 18 1 4.4869 -1.6660 -4.2563 19 6 2.3382 -1.8180 -4.2922 20 6 3.7750 -1.1632 -6.2043 21 1 3.8456 -0.2378 -6.7566 22 6 3.7974 -2.3686 -6.8732 23 7 3.7111 -3.4956 -6.2007 24 14 3.9505 -2.4011 -8.7346 25 1 5.2190 -1.7430 -9.1386 26 1 3.9517 -3.8091 -9.2066 27 1 2.8031 -1.6772 -9.3384 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8031 2.2370 0.8900 32 1 1.8030 2.2371 -0.8900 33 1 6.9312 2.3092 2.5075 34 1 9.0522 2.5632 1.3254 35 1 9.1202 2.5731 -1.1323 36 1 7.0504 2.3290 -2.4342 37 1 4.6866 2.5700 -3.1322 38 1 3.0126 2.3706 -2.5607 39 1 3.3514 0.9620 -4.8332 40 1 2.2444 -1.7988 -3.2064 41 1 1.4965 -1.2887 -4.7390 42 1 2.3429 -2.8517 -4.6381 43 1 3.7265 -4.3436 -6.6714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194654654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:38 Heat of formation + Delta-G solvation = 20.626536 kcal Electronic energy + Delta-G solvation = -26294.787238 eV Core-core repulsion = 22659.292287 eV Total energy + Delta-G solvation = -3635.494951 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.28137 -40.46601 -38.37369 -36.74357 -35.20815 -34.31849 -32.64308 -31.70348 -30.91281 -29.84727 -28.64442 -28.29748 -27.30697 -23.61039 -23.17916 -23.01302 -21.54970 -20.96389 -19.19509 -18.45936 -18.20207 -17.80190 -17.35875 -16.99241 -16.53440 -16.12840 -16.12419 -15.74038 -15.21126 -14.96743 -14.83811 -14.75835 -14.65933 -14.58372 -14.31862 -13.82558 -13.72736 -13.38753 -13.28268 -12.98130 -12.85677 -12.80043 -12.69201 -12.52960 -12.42189 -12.24313 -12.15858 -11.72604 -11.10095 -11.04469 -10.93128 -10.72310 -10.55905 -9.74246 -9.27965 -9.07848 -8.70808 -8.16206 -6.34335 -0.25013 0.50912 0.64465 1.40389 1.45821 1.47239 1.55023 1.57670 1.75772 1.91307 2.35944 2.60467 2.90035 2.95481 3.14291 3.32759 3.66380 3.82710 3.88616 4.00279 4.07821 4.12655 4.29160 4.33997 4.36147 4.45558 4.48535 4.62162 4.78316 4.83722 4.88240 4.98770 5.13493 5.17233 5.44381 5.45443 5.55747 5.56671 5.61212 5.69909 5.89784 5.95470 6.02471 6.11659 6.73908 6.78287 6.93915 7.33470 7.55287 8.89464 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.003814 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.069576 B = 7338.781817 C = 9197.994012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.294 6.294 3 C -0.004 4.004 4 C 0.295 3.705 5 N -0.508 5.508 6 C 0.013 3.987 7 C -0.082 4.082 8 C -0.122 4.122 9 C -0.098 4.098 10 C -0.123 4.123 11 C 0.041 3.959 12 N -0.464 5.464 13 C 0.092 3.908 14 C 0.484 3.516 15 O -0.572 6.572 16 N -0.699 5.699 17 C 0.279 3.721 18 H -0.010 1.010 19 C -0.128 4.128 20 C -0.546 4.546 21 H 0.077 0.923 22 C 0.014 3.986 23 N -0.919 5.919 24 Si 0.970 3.030 25 H -0.270 1.270 26 H -0.290 1.290 27 H -0.262 1.262 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.131 0.869 37 H 0.148 0.852 38 H 0.155 0.845 39 H 0.407 0.593 40 H 0.012 0.988 41 H 0.041 0.959 42 H 0.060 0.940 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.402 17.604 9.100 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.070 6.070 3 C -0.152 4.152 4 C 0.029 3.971 5 N -0.229 5.229 6 C -0.105 4.105 7 C -0.101 4.101 8 C -0.142 4.142 9 C -0.118 4.118 10 C -0.144 4.144 11 C -0.068 4.068 12 N -0.153 5.153 13 C -0.033 4.033 14 C 0.268 3.732 15 O -0.450 6.450 16 N -0.349 5.349 17 C 0.175 3.825 18 H 0.008 0.992 19 C -0.187 4.187 20 C -0.584 4.584 21 H 0.095 0.905 22 C -0.186 4.186 23 N -0.557 5.557 24 Si 0.795 3.205 25 H -0.196 1.196 26 H -0.216 1.216 27 H -0.186 1.186 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.156 0.844 34 H 0.181 0.819 35 H 0.179 0.821 36 H 0.148 0.852 37 H 0.165 0.835 38 H 0.172 0.828 39 H 0.243 0.757 40 H 0.031 0.969 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.833 15.861 10.296 18.928 hybrid contribution -0.651 0.352 -1.875 2.016 sum -1.484 16.213 8.421 18.329 Atomic orbital electron populations 1.23487 0.90514 1.07401 1.06546 1.88507 1.10895 1.09411 1.98188 1.21796 0.87803 0.96415 1.09215 1.22737 0.94570 0.98679 0.81074 1.70290 1.01979 1.22722 1.27929 1.19487 0.92727 1.07045 0.91264 1.20310 0.89324 1.00081 1.00419 1.21037 0.97910 1.00720 0.94569 1.21324 0.97769 0.98361 0.94304 1.20307 0.89415 1.04316 1.00372 1.19187 0.86198 1.06024 0.95413 1.44696 1.05336 1.58669 1.06588 1.21923 1.06283 0.94783 0.80353 1.21191 0.77929 0.91539 0.82529 1.90759 1.48677 1.49962 1.55648 1.46112 1.65370 1.10874 1.12553 1.18231 0.93156 0.77862 0.93220 0.99162 1.21825 0.98122 1.02395 0.96342 1.21533 1.51883 0.93617 0.91339 0.90504 1.25796 0.94259 0.94986 1.03540 1.70066 1.49943 0.98142 1.37550 0.85425 0.79134 0.76965 0.78969 1.19556 1.21565 1.18632 0.87853 0.88185 0.88903 0.84821 0.85373 0.84415 0.81937 0.82126 0.85156 0.83476 0.82767 0.75716 0.96910 0.93988 0.92142 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.08 10.76 113.37 1.22 -0.86 16 2 S -0.29 -8.92 22.36 -56.49 -1.26 -10.18 16 3 C 0.00 -0.09 6.23 71.24 0.44 0.36 16 4 C 0.29 9.12 7.11 137.92 0.98 10.10 16 5 N -0.51 -17.76 11.27 -179.96 -2.03 -19.79 16 6 C 0.01 0.43 7.23 39.45 0.29 0.72 16 7 C -0.08 -2.20 10.05 22.25 0.22 -1.97 16 8 C -0.12 -2.59 9.96 22.02 0.22 -2.37 16 9 C -0.10 -2.13 10.03 22.31 0.22 -1.90 16 10 C -0.12 -3.33 10.05 22.32 0.22 -3.11 16 11 C 0.04 1.32 6.87 38.86 0.27 1.58 16 12 N -0.46 -14.02 2.29 -509.64 -1.17 -15.19 16 13 C 0.09 2.26 6.41 85.63 0.55 2.80 16 14 C 0.48 17.81 7.86 87.66 0.69 18.50 16 15 O -0.57 -27.80 16.09 -3.06 -0.05 -27.85 16 16 N -0.70 -26.38 5.07 -446.09 -2.26 -28.64 16 17 C 0.28 13.99 2.56 44.24 0.11 14.11 16 18 H -0.01 -0.58 7.58 -2.38 -0.02 -0.60 16 19 C -0.13 -6.36 9.26 71.98 0.67 -5.70 16 20 C -0.55 -27.82 8.73 25.60 0.22 -27.59 16 21 H 0.08 3.57 7.74 -2.91 -0.02 3.55 16 22 C 0.01 0.75 5.30 84.65 0.45 1.20 16 23 N -0.92 -52.55 11.31 21.45 0.24 -52.31 16 24 Si 0.97 41.01 29.54 68.60 2.03 43.04 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 27 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 28 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.13 2.09 7.00 -2.39 -0.02 2.08 16 33 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 37 H 0.15 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.15 2.47 6.98 -2.39 -0.02 2.45 16 39 H 0.41 12.05 8.54 -92.70 -0.79 11.26 16 40 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 3.36 6.06 -2.38 -0.01 3.34 16 43 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -80.49 379.12 2.52 -77.97 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.24 Total: 27.10 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 6.78 Total: 5.85 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -5.22 Total: -115.93 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.05 Total: -27.85 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.26 Total: -10.18 kcal Total: -80.49 2.52 -77.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194654654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.596 kcal (2) G-P(sol) polarization free energy of solvation -80.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds