Wall clock time and date at job start Tue Mar 31 2020 18:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81398 * 102.99763 * 2 1 4 4 C 1.50698 * 109.47280 * 179.97438 * 3 2 1 5 5 N 1.30106 * 124.95408 * 270.15337 * 4 3 2 6 6 C 1.35782 * 109.64583 * 180.26267 * 5 4 3 7 7 C 1.39742 * 133.60297 * 179.74030 * 6 5 4 8 8 C 1.36602 * 119.88337 * 180.02562 * 7 6 5 9 9 C 1.38773 * 120.67373 * 359.95982 * 8 7 6 10 10 C 1.37853 * 120.44932 * 0.02562 * 9 8 7 11 11 C 1.38829 * 119.69133 * 0.02562 * 10 9 8 12 12 N 1.36040 * 124.94721 * 89.99574 * 4 3 2 13 13 C 1.46499 * 126.34877 * 0.02562 * 12 4 3 14 14 C 1.50702 * 109.47121 * 269.68222 * 13 12 4 15 15 O 1.21291 * 119.99680 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00409 * 180.02562 * 14 13 12 17 17 C 1.46495 * 120.00120 * 180.02562 * 16 14 13 18 18 H 1.09003 * 109.47495 * 34.99656 * 17 16 14 19 19 C 1.53002 * 109.47130 * 274.99902 * 17 16 14 20 20 C 1.50697 * 109.47265 * 154.99988 * 17 16 14 21 21 H 1.07999 * 119.99662 * 5.37284 * 20 17 16 22 22 C 1.37875 * 120.00120 * 185.37269 * 20 17 16 23 23 N 1.31515 * 119.99748 * 184.89036 * 22 20 17 24 24 Si 1.86794 * 120.00196 * 5.16703 * 22 20 17 25 25 H 1.48500 * 109.47373 * 269.72603 * 24 22 20 26 26 H 1.48505 * 109.47126 * 29.72474 * 24 22 20 27 27 H 1.48499 * 109.47207 * 149.72425 * 24 22 20 28 28 H 1.09001 * 109.47107 * 60.00444 * 1 2 3 29 29 H 1.09010 * 109.46974 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47352 * 299.99650 * 1 2 3 31 31 H 1.09003 * 109.47019 * 59.99569 * 3 2 1 32 32 H 1.09005 * 109.47211 * 300.00396 * 3 2 1 33 33 H 1.07999 * 120.05620 * 0.02562 * 7 6 5 34 34 H 1.07999 * 119.65869 * 179.97438 * 8 7 6 35 35 H 1.07999 * 119.77542 * 180.02562 * 9 8 7 36 36 H 1.08004 * 120.15469 * 179.97438 * 10 9 8 37 37 H 1.09002 * 109.47572 * 149.68492 * 13 12 4 38 38 H 1.09003 * 109.47238 * 29.67883 * 13 12 4 39 39 H 0.96997 * 119.99372 * 0.02562 * 16 14 13 40 40 H 1.09000 * 109.47026 * 54.97693 * 19 17 16 41 41 H 1.09000 * 109.47127 * 174.97700 * 19 17 16 42 42 H 1.08997 * 109.46920 * 294.97726 * 19 17 16 43 43 H 0.97000 * 120.00553 * 355.27176 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9375 0.0006 5 7 4.4599 2.0188 1.0673 6 6 5.7606 2.1732 0.7094 7 6 6.9487 2.3135 1.4315 8 6 8.1350 2.4551 0.7692 9 6 8.1751 2.4607 -0.6179 10 6 7.0156 2.3235 -1.3509 11 6 5.8005 2.1795 -0.6951 12 7 4.4942 2.0251 -1.1141 13 6 4.0279 1.9724 -2.5020 14 6 4.0352 0.5434 -2.9804 15 8 4.3949 -0.3437 -2.2355 16 7 3.6430 0.2511 -4.2363 17 6 3.6495 -1.1381 -4.7011 18 1 3.3816 -1.7985 -3.8764 19 6 5.0465 -1.4989 -5.2103 20 6 2.6507 -1.2988 -5.8181 21 1 2.1324 -0.4350 -6.2073 22 6 2.3987 -2.5485 -6.3430 23 7 1.6006 -2.6773 -7.3803 24 14 3.1847 -4.0596 -5.5762 25 1 4.4895 -4.3263 -6.2331 26 1 3.3998 -3.8236 -4.1258 27 1 2.2897 -5.2303 -5.7597 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 1.8030 2.2371 0.8900 32 1 1.8030 2.2371 -0.8900 33 1 6.9291 2.3099 2.5113 34 1 9.0510 2.5637 1.3309 35 1 9.1211 2.5732 -1.1267 36 1 7.0523 2.3289 -2.4303 37 1 4.6890 2.5693 -3.1303 38 1 3.0146 2.3699 -2.5602 39 1 3.3563 0.9607 -4.8323 40 1 5.7807 -1.2979 -4.4302 41 1 5.0756 -2.5565 -5.4728 42 1 5.2783 -0.8996 -6.0906 43 1 1.1354 -1.9028 -7.7336 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194654667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:43 Heat of formation + Delta-G solvation = 42.282028 kcal Electronic energy + Delta-G solvation = -26386.620459 eV Core-core repulsion = 22752.064560 eV Total energy + Delta-G solvation = -3634.555898 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.28177 -39.12315 -37.44048 -35.17351 -34.10228 -32.53090 -31.71324 -30.71189 -29.89509 -29.02880 -27.68666 -27.31971 -24.87399 -22.38293 -22.22006 -21.56372 -20.12078 -19.67999 -18.05670 -17.52457 -17.16066 -16.88610 -16.32489 -15.55338 -15.31700 -14.98480 -14.86017 -14.38212 -14.01931 -13.91406 -13.83503 -13.73106 -13.67654 -13.09902 -12.99396 -12.78481 -12.58238 -12.41490 -12.17312 -12.01264 -11.76663 -11.57962 -11.52302 -11.43076 -10.64059 -10.59630 -10.13541 -10.02114 -9.96866 -9.81949 -9.37713 -8.92067 -8.61948 -8.30493 -8.27545 -8.08948 -7.62008 -6.60711 -4.29734 0.72098 1.45807 1.58843 2.38408 2.46279 2.90869 3.00004 3.32760 3.43481 3.56661 3.74253 3.88060 3.89666 4.27805 4.36938 4.55688 4.67062 4.83369 4.93004 4.96480 5.06787 5.09290 5.10497 5.15058 5.17357 5.35937 5.39912 5.52431 5.65564 5.68293 6.07142 6.29706 6.37131 6.39958 6.46896 6.49719 6.55070 6.82498 6.83847 6.96628 7.18613 7.25836 7.55545 7.82529 8.15512 8.31118 8.60871 8.82403 9.40859 10.79856 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011931 B = 0.004072 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.222965 B = 6875.415302 C = 8376.910458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.193 6.193 3 C -0.024 4.024 4 C 0.307 3.693 5 N -0.477 5.477 6 C 0.048 3.952 7 C -0.064 4.064 8 C -0.131 4.131 9 C -0.104 4.104 10 C -0.105 4.105 11 C 0.065 3.935 12 N -0.460 5.460 13 C 0.084 3.916 14 C 0.484 3.516 15 O -0.519 6.519 16 N -0.698 5.698 17 C 0.239 3.761 18 H 0.051 0.949 19 C -0.158 4.158 20 C -0.608 4.608 21 H 0.062 0.938 22 C 0.038 3.962 23 N -0.905 5.905 24 Si 1.048 2.952 25 H -0.281 1.281 26 H -0.273 1.273 27 H -0.287 1.287 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.392 0.608 40 H 0.032 0.968 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.868 14.116 13.233 19.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.031 5.969 3 C -0.173 4.173 4 C 0.042 3.958 5 N -0.198 5.198 6 C -0.070 4.070 7 C -0.084 4.084 8 C -0.151 4.151 9 C -0.123 4.123 10 C -0.126 4.126 11 C -0.044 4.044 12 N -0.149 5.149 13 C -0.042 4.042 14 C 0.266 3.734 15 O -0.395 6.395 16 N -0.347 5.347 17 C 0.136 3.864 18 H 0.068 0.932 19 C -0.217 4.217 20 C -0.647 4.647 21 H 0.080 0.920 22 C -0.168 4.168 23 N -0.538 5.538 24 Si 0.877 3.123 25 H -0.208 1.208 26 H -0.199 1.199 27 H -0.214 1.214 28 H 0.097 0.903 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.134 0.866 32 H 0.116 0.884 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.224 0.776 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.584 10.895 14.290 18.817 hybrid contribution -0.990 3.036 -1.290 3.444 sum 4.594 13.931 13.000 19.600 Atomic orbital electron populations 1.23500 0.95170 1.07003 1.04728 1.88072 1.05604 1.05291 1.97894 1.21729 0.89474 0.99193 1.06912 1.22210 0.93370 0.99135 0.81129 1.70353 1.01236 1.21537 1.26653 1.18984 0.92119 1.05663 0.90279 1.19972 0.89268 0.99486 0.99633 1.20599 0.97387 1.02824 0.94338 1.20846 0.97122 1.00393 0.93984 1.19965 0.89335 1.03756 0.99508 1.18789 0.85245 1.05259 0.95156 1.44582 1.05475 1.58792 1.06037 1.21766 1.03262 0.98300 0.80890 1.20423 0.79692 0.89865 0.83426 1.90764 1.46639 1.47557 1.54540 1.46182 1.64969 1.11730 1.11843 1.19213 0.93381 0.78211 0.95630 0.93171 1.22398 0.98710 1.00792 0.99781 1.22130 1.25833 0.96368 1.20324 0.92016 1.25664 0.96150 1.00729 0.94295 1.70840 1.27692 1.34371 1.20920 0.83955 0.75933 0.75700 0.76731 1.20819 1.19883 1.21365 0.90338 0.87607 0.90509 0.86629 0.88390 0.85472 0.85482 0.85367 0.86171 0.86641 0.86663 0.77551 0.94911 0.93110 0.93154 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 10.76 101.05 1.09 -0.32 16 2 S -0.19 -2.90 22.36 -107.50 -2.40 -5.30 16 3 C -0.02 -0.29 6.23 36.00 0.22 -0.07 16 4 C 0.31 4.67 7.11 -154.82 -1.10 3.57 16 5 N -0.48 -7.96 11.27 -8.23 -0.09 -8.06 16 6 C 0.05 0.77 7.23 -84.70 -0.61 0.16 16 7 C -0.06 -0.83 10.05 -39.61 -0.40 -1.23 16 8 C -0.13 -1.42 9.96 -39.97 -0.40 -1.82 16 9 C -0.10 -1.15 10.03 -39.52 -0.40 -1.54 16 10 C -0.10 -1.37 10.05 -39.50 -0.40 -1.77 16 11 C 0.06 1.00 6.87 -83.99 -0.58 0.42 16 12 N -0.46 -6.85 2.29 -112.43 -0.26 -7.11 16 13 C 0.08 1.08 6.41 -5.19 -0.03 1.04 16 14 C 0.48 8.57 7.86 -10.98 -0.09 8.49 16 15 O -0.52 -11.52 16.09 5.55 0.09 -11.43 16 16 N -0.70 -12.96 5.07 -54.93 -0.28 -13.23 16 17 C 0.24 5.54 2.14 -69.09 -0.15 5.39 16 18 H 0.05 1.31 6.08 -51.93 -0.32 0.99 16 19 C -0.16 -3.47 9.07 37.16 0.34 -3.13 16 20 C -0.61 -15.90 9.10 -34.44 -0.31 -16.21 16 21 H 0.06 1.67 7.95 -52.49 -0.42 1.25 16 22 C 0.04 1.04 5.43 -17.82 -0.10 0.94 16 23 N -0.90 -26.60 13.70 55.43 0.76 -25.84 16 24 Si 1.05 25.33 25.28 -169.99 -4.30 21.03 16 25 H -0.28 -6.46 6.82 56.52 0.39 -6.07 16 26 H -0.27 -6.49 6.35 56.52 0.36 -6.13 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.11 1.09 8.14 -51.92 -0.42 0.66 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.12 1.17 8.14 -51.92 -0.42 0.75 16 32 H 0.10 0.95 7.01 -51.92 -0.36 0.58 16 33 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.12 1.12 6.99 -51.93 -0.36 0.76 16 39 H 0.39 6.18 8.53 -40.82 -0.35 5.84 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 1.14 4.41 -51.93 -0.23 0.91 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.27 7.77 8.72 -40.82 -0.36 7.41 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -35.03 373.56 -9.66 -44.69 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.90 Total: 5.72 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -2.91 Total: -6.10 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.13 Total: -54.24 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -4.30 Total: 21.03 kcal Atomic # 16 Polarization: -2.90 SS G_CDS: -2.40 Total: -5.30 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.03 -9.66 -44.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194654667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.973 kcal (2) G-P(sol) polarization free energy of solvation -35.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds