Wall clock time and date at job start Tue Mar 31 2020 18:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81398 * 102.99763 * 2 1 4 4 C 1.50698 * 109.47280 * 179.97438 * 3 2 1 5 5 N 1.30106 * 124.95408 * 270.15337 * 4 3 2 6 6 C 1.35782 * 109.64583 * 180.26267 * 5 4 3 7 7 C 1.39742 * 133.60297 * 179.74030 * 6 5 4 8 8 C 1.36602 * 119.88337 * 180.02562 * 7 6 5 9 9 C 1.38773 * 120.67373 * 359.95982 * 8 7 6 10 10 C 1.37853 * 120.44932 * 0.02562 * 9 8 7 11 11 C 1.38829 * 119.69133 * 0.02562 * 10 9 8 12 12 N 1.36040 * 124.94721 * 89.99574 * 4 3 2 13 13 C 1.46499 * 126.34877 * 0.02562 * 12 4 3 14 14 C 1.50702 * 109.47121 * 269.68222 * 13 12 4 15 15 O 1.21291 * 119.99680 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00409 * 180.02562 * 14 13 12 17 17 C 1.46495 * 120.00120 * 180.02562 * 16 14 13 18 18 H 1.09003 * 109.47495 * 34.99656 * 17 16 14 19 19 C 1.53002 * 109.47130 * 274.99902 * 17 16 14 20 20 C 1.50697 * 109.47265 * 154.99988 * 17 16 14 21 21 H 1.07999 * 119.99662 * 5.37284 * 20 17 16 22 22 C 1.37875 * 120.00120 * 185.37269 * 20 17 16 23 23 N 1.31515 * 119.99748 * 184.89036 * 22 20 17 24 24 Si 1.86794 * 120.00196 * 5.16703 * 22 20 17 25 25 H 1.48500 * 109.47373 * 269.72603 * 24 22 20 26 26 H 1.48505 * 109.47126 * 29.72474 * 24 22 20 27 27 H 1.48499 * 109.47207 * 149.72425 * 24 22 20 28 28 H 1.09001 * 109.47107 * 60.00444 * 1 2 3 29 29 H 1.09010 * 109.46974 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47352 * 299.99650 * 1 2 3 31 31 H 1.09003 * 109.47019 * 59.99569 * 3 2 1 32 32 H 1.09005 * 109.47211 * 300.00396 * 3 2 1 33 33 H 1.07999 * 120.05620 * 0.02562 * 7 6 5 34 34 H 1.07999 * 119.65869 * 179.97438 * 8 7 6 35 35 H 1.07999 * 119.77542 * 180.02562 * 9 8 7 36 36 H 1.08004 * 120.15469 * 179.97438 * 10 9 8 37 37 H 1.09002 * 109.47572 * 149.68492 * 13 12 4 38 38 H 1.09003 * 109.47238 * 29.67883 * 13 12 4 39 39 H 0.96997 * 119.99372 * 0.02562 * 16 14 13 40 40 H 1.09000 * 109.47026 * 54.97693 * 19 17 16 41 41 H 1.09000 * 109.47127 * 174.97700 * 19 17 16 42 42 H 1.08997 * 109.46920 * 294.97726 * 19 17 16 43 43 H 0.97000 * 120.00553 * 355.27176 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9375 0.0006 5 7 4.4599 2.0188 1.0673 6 6 5.7606 2.1732 0.7094 7 6 6.9487 2.3135 1.4315 8 6 8.1350 2.4551 0.7692 9 6 8.1751 2.4607 -0.6179 10 6 7.0156 2.3235 -1.3509 11 6 5.8005 2.1795 -0.6951 12 7 4.4942 2.0251 -1.1141 13 6 4.0279 1.9724 -2.5020 14 6 4.0352 0.5434 -2.9804 15 8 4.3949 -0.3437 -2.2355 16 7 3.6430 0.2511 -4.2363 17 6 3.6495 -1.1381 -4.7011 18 1 3.3816 -1.7985 -3.8764 19 6 5.0465 -1.4989 -5.2103 20 6 2.6507 -1.2988 -5.8181 21 1 2.1324 -0.4350 -6.2073 22 6 2.3987 -2.5485 -6.3430 23 7 1.6006 -2.6773 -7.3803 24 14 3.1847 -4.0596 -5.5762 25 1 4.4895 -4.3263 -6.2331 26 1 3.3998 -3.8236 -4.1258 27 1 2.2897 -5.2303 -5.7597 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 1.8030 2.2371 0.8900 32 1 1.8030 2.2371 -0.8900 33 1 6.9291 2.3099 2.5113 34 1 9.0510 2.5637 1.3309 35 1 9.1211 2.5732 -1.1267 36 1 7.0523 2.3289 -2.4303 37 1 4.6890 2.5693 -3.1303 38 1 3.0146 2.3699 -2.5602 39 1 3.3563 0.9607 -4.8323 40 1 5.7807 -1.2979 -4.4302 41 1 5.0756 -2.5565 -5.4728 42 1 5.2783 -0.8996 -6.0906 43 1 1.1354 -1.9028 -7.7336 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194654667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:42 Heat of formation + Delta-G solvation = 19.263515 kcal Electronic energy + Delta-G solvation = -26387.618616 eV Core-core repulsion = 22752.064560 eV Total energy + Delta-G solvation = -3635.554056 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.30762 -40.58908 -38.39383 -36.89657 -35.24831 -34.47694 -32.67749 -32.03970 -31.22952 -29.87998 -28.72535 -28.39327 -26.85658 -23.56271 -23.18885 -22.94888 -21.54281 -21.07057 -19.87470 -18.48798 -18.37203 -18.23656 -17.44911 -16.95605 -16.55791 -16.15412 -16.10721 -15.58356 -15.26935 -14.99271 -14.88898 -14.76328 -14.71769 -14.58196 -14.55397 -14.29973 -13.83266 -13.68897 -13.50268 -13.36333 -13.11626 -12.84350 -12.55045 -12.50501 -12.44055 -11.99921 -11.76715 -11.72481 -11.06138 -10.98719 -10.96954 -10.79525 -10.70845 -9.93647 -9.29812 -9.09721 -8.77666 -8.74582 -6.47122 -0.27100 0.49501 0.62237 1.36510 1.38481 1.48795 1.53272 1.65079 1.65587 1.88191 2.36699 2.43432 2.88383 2.93259 3.03496 3.30130 3.61726 3.76311 3.80729 3.96133 4.05557 4.11481 4.26646 4.30191 4.32889 4.44241 4.47476 4.47871 4.60340 4.61817 4.73855 4.82877 4.85417 5.02383 5.15714 5.38993 5.43354 5.54794 5.56289 5.58670 5.61832 5.93938 5.97348 6.00692 6.51865 6.75691 6.78495 7.26356 7.39254 8.62100 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011931 B = 0.004072 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.222965 B = 6875.415302 C = 8376.910458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.293 6.293 3 C -0.005 4.005 4 C 0.295 3.705 5 N -0.507 5.507 6 C 0.013 3.987 7 C -0.082 4.082 8 C -0.122 4.122 9 C -0.096 4.096 10 C -0.122 4.122 11 C 0.043 3.957 12 N -0.464 5.464 13 C 0.092 3.908 14 C 0.487 3.513 15 O -0.565 6.565 16 N -0.696 5.696 17 C 0.245 3.755 18 H 0.020 0.980 19 C -0.151 4.151 20 C -0.597 4.597 21 H 0.048 0.952 22 C -0.006 4.006 23 N -0.936 5.936 24 Si 1.076 2.924 25 H -0.260 1.260 26 H -0.273 1.273 27 H -0.288 1.288 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.133 0.867 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.407 0.593 40 H 0.039 0.961 41 H 0.043 0.957 42 H 0.060 0.940 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.222 15.920 13.502 21.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.069 6.069 3 C -0.153 4.153 4 C 0.029 3.971 5 N -0.228 5.228 6 C -0.105 4.105 7 C -0.101 4.101 8 C -0.142 4.142 9 C -0.116 4.116 10 C -0.143 4.143 11 C -0.066 4.066 12 N -0.154 5.154 13 C -0.034 4.034 14 C 0.271 3.729 15 O -0.444 6.444 16 N -0.346 5.346 17 C 0.140 3.860 18 H 0.038 0.962 19 C -0.210 4.210 20 C -0.635 4.635 21 H 0.066 0.934 22 C -0.206 4.206 23 N -0.572 5.572 24 Si 0.901 3.099 25 H -0.185 1.185 26 H -0.199 1.199 27 H -0.214 1.214 28 H 0.108 0.892 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.180 0.820 35 H 0.180 0.820 36 H 0.151 0.849 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.242 0.758 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.946 12.748 14.551 20.555 hybrid contribution -1.368 2.552 -1.295 3.172 sum 5.578 15.300 13.256 20.998 Atomic orbital electron populations 1.23491 0.90611 1.07457 1.06469 1.88369 1.10829 1.09473 1.98193 1.21789 0.88048 0.96374 1.09119 1.22675 0.94425 0.98853 0.81149 1.70291 1.02093 1.22563 1.27865 1.19485 0.92628 1.07080 0.91352 1.20309 0.89360 1.00075 1.00399 1.21041 0.97839 1.00659 0.94681 1.21331 0.97852 0.98212 0.94206 1.20307 0.89207 1.04290 1.00452 1.19182 0.86113 1.06015 0.95331 1.44684 1.05427 1.58801 1.06442 1.21894 1.06241 0.94754 0.80503 1.21171 0.77849 0.91679 0.82165 1.90754 1.48394 1.49676 1.55543 1.45927 1.65512 1.10300 1.12863 1.18801 0.93295 0.80467 0.93463 0.96216 1.22276 0.97788 1.00564 1.00336 1.22307 1.25461 0.95570 1.20197 0.93390 1.26626 0.96312 1.03379 0.94277 1.70923 1.29532 1.34098 1.22660 0.83564 0.76421 0.73597 0.76309 1.18501 1.19881 1.21412 0.89243 0.87782 0.88033 0.84829 0.85654 0.84542 0.82001 0.82008 0.84870 0.83144 0.83254 0.75777 0.94161 0.93783 0.92066 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 10.76 113.37 1.22 -0.97 16 2 S -0.29 -8.81 22.36 -56.49 -1.26 -10.07 16 3 C 0.00 -0.11 6.23 71.24 0.44 0.34 16 4 C 0.29 8.78 7.11 137.92 0.98 9.76 16 5 N -0.51 -17.05 11.27 -179.96 -2.03 -19.08 16 6 C 0.01 0.40 7.23 39.45 0.29 0.68 16 7 C -0.08 -2.06 10.05 22.25 0.22 -1.83 16 8 C -0.12 -2.34 9.96 22.01 0.22 -2.12 16 9 C -0.10 -1.85 10.03 22.31 0.22 -1.62 16 10 C -0.12 -2.94 10.05 22.32 0.22 -2.72 16 11 C 0.04 1.27 6.87 38.86 0.27 1.54 16 12 N -0.46 -13.22 2.29 -509.63 -1.17 -14.39 16 13 C 0.09 2.10 6.41 85.63 0.55 2.65 16 14 C 0.49 16.60 7.86 87.66 0.69 17.29 16 15 O -0.57 -25.09 16.09 -3.06 -0.05 -25.14 16 16 N -0.70 -24.86 5.07 -446.09 -2.26 -27.12 16 17 C 0.24 11.20 2.14 44.25 0.09 11.30 16 18 H 0.02 1.05 6.08 -2.39 -0.01 1.03 16 19 C -0.15 -6.42 9.07 71.98 0.65 -5.77 16 20 C -0.60 -31.14 9.10 25.60 0.23 -30.91 16 21 H 0.05 2.59 7.95 -2.91 -0.02 2.57 16 22 C -0.01 -0.31 5.43 84.65 0.46 0.15 16 23 N -0.94 -55.62 13.70 21.45 0.29 -55.33 16 24 Si 1.08 51.11 25.28 68.60 1.73 52.85 16 25 H -0.26 -11.35 6.82 99.48 0.68 -10.67 16 26 H -0.27 -12.89 6.35 99.48 0.63 -12.26 16 27 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.10 1.47 8.14 -2.40 -0.02 1.45 16 31 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.13 2.11 7.01 -2.39 -0.02 2.09 16 33 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 36 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 37 H 0.15 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.15 2.38 6.99 -2.39 -0.02 2.36 16 39 H 0.41 12.02 8.53 -92.71 -0.79 11.23 16 40 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.04 1.91 4.41 -2.39 -0.01 1.90 16 42 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.26 15.32 8.72 -92.71 -0.81 14.51 16 Total: -1.00 -79.40 373.56 2.13 -77.27 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.11 Total: 23.25 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 6.77 Total: -2.24 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -5.16 Total: -115.92 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.05 Total: -25.14 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 1.73 Total: 52.85 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.26 Total: -10.07 kcal Total: -79.40 2.13 -77.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194654667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.532 kcal (2) G-P(sol) polarization free energy of solvation -79.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds