Wall clock time and date at job start Tue Mar 31 2020 18:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47132 * 2 1 4 4 C 1.38055 * 126.34759 * 90.02640 * 3 2 1 5 5 C 1.38833 * 134.14132 * 0.28971 * 4 3 2 6 6 C 1.37855 * 119.69108 * 180.16031 * 5 4 3 7 7 C 1.38782 * 120.44765 * 359.51403 * 6 5 4 8 8 C 1.36604 * 120.66925 * 0.24829 * 7 6 5 9 9 C 1.39734 * 119.88478 * 359.97438 * 8 7 6 10 10 N 1.35786 * 133.59669 * 180.02562 * 9 8 7 11 11 C 1.30117 * 109.64357 * 179.97438 * 10 9 8 12 12 C 1.50700 * 124.95033 * 180.02562 * 11 10 9 13 13 H 1.08996 * 109.46944 * 164.96137 * 12 11 10 14 14 C 1.53007 * 109.46898 * 284.95505 * 12 11 10 15 15 N 1.46496 * 109.47296 * 44.95489 * 12 11 10 16 16 C 1.34779 * 119.99672 * 154.99619 * 15 12 11 17 17 O 1.21278 * 120.00216 * 0.02562 * 16 15 12 18 18 C 1.50700 * 119.99411 * 180.02562 * 16 15 12 19 19 S 1.81005 * 109.46861 * 180.02562 * 18 16 15 20 20 C 1.76195 * 100.00267 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99905 * 359.97438 * 20 19 18 22 22 C 1.38795 * 120.00457 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99391 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00437 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47035 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47297 * 119.99916 * 24 22 20 27 27 H 1.48501 * 109.47272 * 240.00067 * 24 22 20 28 28 H 1.09004 * 109.46934 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47114 * 299.99335 * 1 2 3 30 30 H 1.08996 * 109.47125 * 60.00081 * 1 2 3 31 31 H 1.09002 * 109.46736 * 240.00082 * 2 1 3 32 32 H 1.08999 * 109.46806 * 120.00610 * 2 1 3 33 33 H 1.08006 * 120.15865 * 0.02562 * 5 4 3 34 34 H 1.08000 * 119.77772 * 179.76233 * 6 5 4 35 35 H 1.08001 * 119.66394 * 180.22346 * 7 6 5 36 36 H 1.08000 * 120.05595 * 179.97438 * 8 7 6 37 37 H 1.09000 * 109.46658 * 179.97438 * 14 12 11 38 38 H 1.08998 * 109.46979 * 300.00326 * 14 12 11 39 39 H 1.09002 * 109.46564 * 60.00187 * 14 12 11 40 40 H 0.97001 * 120.00204 * 335.00708 * 15 12 11 41 41 H 1.08997 * 109.47716 * 300.00099 * 18 16 15 42 42 H 1.08998 * 109.47174 * 60.00659 * 18 16 15 43 43 H 0.97012 * 119.99525 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2916 2.1524 1.1119 5 6 2.2204 1.9343 2.4812 6 6 2.5721 2.9430 3.3525 7 6 3.0057 4.1698 2.8699 8 6 3.0866 4.4008 1.5260 9 6 2.7310 3.3946 0.6240 10 7 2.7041 3.3189 -0.7315 11 6 2.2883 2.1409 -1.0957 12 6 2.1280 1.6852 -2.5231 13 1 2.0277 0.6002 -2.5490 14 6 0.8769 2.3275 -3.1260 15 7 3.3045 2.0856 -3.2987 16 6 3.6451 1.4006 -4.4084 17 8 2.9773 0.4531 -4.7650 18 6 4.8557 1.8122 -5.2059 19 16 5.0466 0.7070 -6.6266 20 6 6.4931 1.3968 -7.3588 21 1 6.9715 2.2530 -6.9065 22 6 7.0172 0.8406 -8.5174 23 7 6.4338 -0.2025 -9.0689 24 14 8.5503 1.5724 -9.2941 25 1 9.0093 2.7313 -8.4868 26 1 9.6213 0.5446 -9.3390 27 1 8.2390 2.0235 -10.6743 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8891 0.9794 2.8620 34 1 2.5136 2.7761 4.4179 35 1 3.2815 4.9500 3.5640 36 1 3.4250 5.3594 1.1613 37 1 0.7612 1.9982 -4.1586 38 1 0.0015 2.0296 -2.5489 39 1 0.9772 3.4126 -3.1000 40 1 3.8385 2.8435 -3.0136 41 1 4.7287 2.8362 -5.5571 42 1 5.7434 1.7516 -4.5762 43 1 6.8004 -0.5915 -9.8785 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194782067.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:34 Heat of formation + Delta-G solvation = 31.017747 kcal Electronic energy + Delta-G solvation = -25323.726942 eV Core-core repulsion = 21688.682588 eV Total energy + Delta-G solvation = -3635.044354 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.54421 -39.37248 -37.79004 -35.49566 -35.05563 -32.42368 -31.68773 -31.35883 -29.70934 -29.15575 -28.45352 -25.49335 -24.64146 -24.27304 -22.44947 -21.88702 -20.42628 -19.94548 -18.03633 -17.62184 -17.38829 -16.50904 -16.23943 -15.87257 -15.18262 -14.98705 -14.88053 -14.79657 -14.54847 -14.02296 -14.01367 -13.80831 -13.42379 -13.31549 -13.08449 -12.72042 -12.61869 -12.37088 -12.21317 -12.00651 -11.80707 -11.71673 -11.64278 -11.37078 -11.06226 -11.01309 -10.75160 -10.66469 -10.18620 -9.80654 -9.49812 -9.09604 -9.03549 -8.58236 -8.35492 -8.23905 -6.49813 -6.21599 -3.91827 0.65690 1.25485 2.16982 2.43100 3.00680 3.06687 3.22473 3.29258 3.34374 3.61967 3.70160 3.74141 4.11093 4.20822 4.21019 4.53164 4.66185 4.69640 4.73965 4.88961 4.96218 5.06776 5.12740 5.14036 5.14685 5.18620 5.22789 5.31246 5.48495 5.49042 5.61127 5.67344 5.76996 5.85829 5.89969 6.05996 6.16224 6.18679 6.24115 6.27298 6.48138 6.61877 6.80490 7.60979 7.62548 7.67475 8.36355 8.53057 9.24288 10.85883 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.019084 B = 0.002377 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.854754 B =11779.135116 C =12642.534709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 N -0.481 5.481 4 C 0.049 3.951 5 C -0.110 4.110 6 C -0.104 4.104 7 C -0.131 4.131 8 C -0.062 4.062 9 C 0.047 3.953 10 N -0.483 5.483 11 C 0.281 3.719 12 C 0.227 3.773 13 H 0.104 0.896 14 C -0.157 4.157 15 N -0.726 5.726 16 C 0.537 3.463 17 O -0.518 6.518 18 C -0.152 4.152 19 S -0.060 6.060 20 C -0.534 4.534 21 H 0.074 0.926 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.409 0.591 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.791 4.866 25.473 28.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.171 5.171 4 C -0.060 4.060 5 C -0.131 4.131 6 C -0.124 4.124 7 C -0.151 4.151 8 C -0.081 4.081 9 C -0.071 4.071 10 N -0.202 5.202 11 C 0.015 3.985 12 C 0.119 3.881 13 H 0.121 0.879 14 C -0.216 4.216 15 N -0.382 5.382 16 C 0.324 3.676 17 O -0.392 6.392 18 C -0.303 4.303 19 S 0.167 5.833 20 C -0.682 4.682 21 H 0.092 0.908 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.244 0.756 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.714 3.664 24.193 27.574 hybrid contribution 1.770 1.194 0.673 2.238 sum -10.944 4.858 24.865 27.598 Atomic orbital electron populations 1.22199 0.93852 1.03531 1.03306 1.21905 0.95868 0.79342 1.05096 1.45316 1.54075 1.12945 1.04726 1.18888 1.04761 0.92956 0.89348 1.19934 1.04232 1.00155 0.88739 1.20875 0.99391 0.92900 0.99191 1.20642 1.02004 0.97666 0.94816 1.20041 0.98879 0.97680 0.91542 1.19067 1.04200 0.93768 0.90092 1.70331 1.21501 1.17466 1.10942 1.23597 0.97320 0.86997 0.90625 1.19126 0.87794 1.00257 0.80874 0.87865 1.22176 0.95112 1.02056 1.02250 1.46006 1.29424 1.35495 1.27282 1.20361 0.85682 0.81900 0.79671 1.90693 1.53035 1.27524 1.67973 1.23527 0.97354 1.06251 1.03158 1.85341 1.36882 1.38936 1.22133 1.22912 1.13120 1.18705 1.13468 0.90821 1.24994 0.97826 0.94849 0.95963 1.70033 1.39352 1.21096 1.19867 0.86110 0.81434 0.78959 0.78964 1.19582 1.20589 1.20566 0.90117 0.91899 0.91483 0.88282 0.88904 0.86175 0.85378 0.85404 0.85309 0.90151 0.91864 0.91163 0.75553 0.88899 0.89099 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.24 37.16 0.38 -0.66 16 2 C 0.10 0.74 6.61 -4.04 -0.03 0.71 16 3 N -0.48 -5.11 2.80 -111.16 -0.31 -5.42 16 4 C 0.05 0.55 6.87 -83.99 -0.58 -0.02 16 5 C -0.11 -0.96 10.05 -39.50 -0.40 -1.36 16 6 C -0.10 -0.79 10.03 -39.52 -0.40 -1.19 16 7 C -0.13 -1.06 9.96 -39.97 -0.40 -1.46 16 8 C -0.06 -0.64 10.05 -39.61 -0.40 -1.04 16 9 C 0.05 0.60 7.23 -84.70 -0.61 -0.01 16 10 N -0.48 -6.60 10.90 -8.23 -0.09 -6.69 16 11 C 0.28 3.48 6.68 -154.82 -1.03 2.44 16 12 C 0.23 2.85 2.93 -69.08 -0.20 2.65 16 13 H 0.10 1.30 6.11 -51.93 -0.32 0.98 16 14 C -0.16 -1.79 9.47 37.16 0.35 -1.44 16 15 N -0.73 -10.49 5.07 -54.93 -0.28 -10.77 16 16 C 0.54 9.92 7.81 -10.98 -0.09 9.83 16 17 O -0.52 -11.15 15.52 5.56 0.09 -11.06 16 18 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.53 -15.22 9.50 30.94 0.29 -14.92 16 21 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16 24 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.46 7.68 -51.93 -0.40 0.06 16 31 H 0.10 0.73 6.87 -51.93 -0.36 0.37 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.41 5.48 8.30 -40.82 -0.34 5.14 16 41 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 42 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 43 H 0.27 7.46 8.31 -40.81 -0.34 7.12 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -35.06 380.00 -10.35 -45.41 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.00 Total: 2.87 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.98 Total: -7.35 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.05 Total: -48.25 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.06 -10.35 -45.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194782067.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.429 kcal (2) G-P(sol) polarization free energy of solvation -35.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds