Wall clock time and date at job start Tue Mar 31 2020 18:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47132 * 2 1 4 4 C 1.38055 * 126.34759 * 90.02640 * 3 2 1 5 5 C 1.38833 * 134.14132 * 0.28971 * 4 3 2 6 6 C 1.37855 * 119.69108 * 180.16031 * 5 4 3 7 7 C 1.38782 * 120.44765 * 359.51403 * 6 5 4 8 8 C 1.36604 * 120.66925 * 0.24829 * 7 6 5 9 9 C 1.39734 * 119.88478 * 359.97438 * 8 7 6 10 10 N 1.35786 * 133.59669 * 180.02562 * 9 8 7 11 11 C 1.30117 * 109.64357 * 179.97438 * 10 9 8 12 12 C 1.50700 * 124.95033 * 180.02562 * 11 10 9 13 13 H 1.08996 * 109.46944 * 164.96137 * 12 11 10 14 14 C 1.53007 * 109.46898 * 284.95505 * 12 11 10 15 15 N 1.46496 * 109.47296 * 44.95489 * 12 11 10 16 16 C 1.34779 * 119.99672 * 154.99619 * 15 12 11 17 17 O 1.21278 * 120.00216 * 0.02562 * 16 15 12 18 18 C 1.50700 * 119.99411 * 180.02562 * 16 15 12 19 19 S 1.81005 * 109.46861 * 180.02562 * 18 16 15 20 20 C 1.76195 * 100.00267 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99905 * 359.97438 * 20 19 18 22 22 C 1.38795 * 120.00457 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99391 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00437 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47035 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47297 * 119.99916 * 24 22 20 27 27 H 1.48501 * 109.47272 * 240.00067 * 24 22 20 28 28 H 1.09004 * 109.46934 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47114 * 299.99335 * 1 2 3 30 30 H 1.08996 * 109.47125 * 60.00081 * 1 2 3 31 31 H 1.09002 * 109.46736 * 240.00082 * 2 1 3 32 32 H 1.08999 * 109.46806 * 120.00610 * 2 1 3 33 33 H 1.08006 * 120.15865 * 0.02562 * 5 4 3 34 34 H 1.08000 * 119.77772 * 179.76233 * 6 5 4 35 35 H 1.08001 * 119.66394 * 180.22346 * 7 6 5 36 36 H 1.08000 * 120.05595 * 179.97438 * 8 7 6 37 37 H 1.09000 * 109.46658 * 179.97438 * 14 12 11 38 38 H 1.08998 * 109.46979 * 300.00326 * 14 12 11 39 39 H 1.09002 * 109.46564 * 60.00187 * 14 12 11 40 40 H 0.97001 * 120.00204 * 335.00708 * 15 12 11 41 41 H 1.08997 * 109.47716 * 300.00099 * 18 16 15 42 42 H 1.08998 * 109.47174 * 60.00659 * 18 16 15 43 43 H 0.97012 * 119.99525 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2916 2.1524 1.1119 5 6 2.2204 1.9343 2.4812 6 6 2.5721 2.9430 3.3525 7 6 3.0057 4.1698 2.8699 8 6 3.0866 4.4008 1.5260 9 6 2.7310 3.3946 0.6240 10 7 2.7041 3.3189 -0.7315 11 6 2.2883 2.1409 -1.0957 12 6 2.1280 1.6852 -2.5231 13 1 2.0277 0.6002 -2.5490 14 6 0.8769 2.3275 -3.1260 15 7 3.3045 2.0856 -3.2987 16 6 3.6451 1.4006 -4.4084 17 8 2.9773 0.4531 -4.7650 18 6 4.8557 1.8122 -5.2059 19 16 5.0466 0.7070 -6.6266 20 6 6.4931 1.3968 -7.3588 21 1 6.9715 2.2530 -6.9065 22 6 7.0172 0.8406 -8.5174 23 7 6.4338 -0.2025 -9.0689 24 14 8.5503 1.5724 -9.2941 25 1 9.0093 2.7313 -8.4868 26 1 9.6213 0.5446 -9.3390 27 1 8.2390 2.0235 -10.6743 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8891 0.9794 2.8620 34 1 2.5136 2.7761 4.4179 35 1 3.2815 4.9500 3.5640 36 1 3.4250 5.3594 1.1613 37 1 0.7612 1.9982 -4.1586 38 1 0.0015 2.0296 -2.5489 39 1 0.9772 3.4126 -3.1000 40 1 3.8385 2.8435 -3.0136 41 1 4.7287 2.8362 -5.5571 42 1 5.7434 1.7516 -4.5762 43 1 6.8004 -0.5915 -9.8785 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194782067.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:33 Heat of formation + Delta-G solvation = 9.286626 kcal Electronic energy + Delta-G solvation = -25324.669274 eV Core-core repulsion = 21688.682588 eV Total energy + Delta-G solvation = -3635.986686 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.33963 -40.77824 -38.54740 -36.52151 -35.93550 -34.58734 -32.84749 -32.13724 -30.38308 -30.24494 -29.63496 -27.66478 -25.58361 -24.87531 -23.20252 -22.76893 -21.67696 -20.87663 -19.87820 -18.53896 -18.26777 -17.68855 -17.48811 -16.88280 -16.75804 -16.40914 -16.09652 -15.83511 -15.47305 -15.21797 -14.88867 -14.69004 -14.65128 -14.48593 -14.32157 -13.95852 -13.49905 -13.36726 -13.16269 -13.10078 -12.92250 -12.91227 -12.61440 -12.58046 -12.45514 -12.33236 -12.15041 -11.72381 -11.41501 -11.15978 -11.06819 -11.00775 -10.35649 -10.29548 -9.33083 -9.09269 -8.66323 -8.35387 -6.12653 -0.08552 0.55565 1.18218 1.38057 1.41048 1.49293 1.53105 1.58285 1.67256 2.25344 2.29206 2.83518 2.90237 2.98903 3.29905 3.35390 3.62392 3.78669 3.93379 4.00510 4.03955 4.07739 4.14092 4.27423 4.27765 4.41303 4.45940 4.49237 4.50336 4.54425 4.70876 4.74718 4.82033 4.89622 5.04787 5.18460 5.20453 5.26967 5.42411 5.45831 5.57028 5.58981 5.95542 6.03897 6.19960 6.35597 6.77824 7.06429 7.10127 8.73960 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.019084 B = 0.002377 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.854754 B =11779.135116 C =12642.534709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.092 3.908 3 N -0.477 5.477 4 C 0.037 3.963 5 C -0.116 4.116 6 C -0.097 4.097 7 C -0.124 4.124 8 C -0.083 4.083 9 C 0.010 3.990 10 N -0.508 5.508 11 C 0.267 3.733 12 C 0.230 3.770 13 H 0.103 0.897 14 C -0.149 4.149 15 N -0.708 5.708 16 C 0.544 3.456 17 O -0.552 6.552 18 C -0.131 4.131 19 S -0.139 6.139 20 C -0.547 4.547 21 H 0.080 0.920 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.998 3.002 25 H -0.259 1.259 26 H -0.273 1.273 27 H -0.273 1.273 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.144 0.856 34 H 0.163 0.837 35 H 0.156 0.844 36 H 0.131 0.869 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.416 0.584 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.440 5.731 28.140 30.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.167 5.167 4 C -0.072 4.072 5 C -0.136 4.136 6 C -0.116 4.116 7 C -0.144 4.144 8 C -0.102 4.102 9 C -0.108 4.108 10 N -0.228 5.228 11 C 0.000 4.000 12 C 0.123 3.877 13 H 0.121 0.879 14 C -0.208 4.208 15 N -0.362 5.362 16 C 0.330 3.670 17 O -0.430 6.430 18 C -0.282 4.282 19 S 0.089 5.911 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.546 5.546 24 Si 0.820 3.180 25 H -0.183 1.183 26 H -0.198 1.198 27 H -0.198 1.198 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.130 0.870 33 H 0.162 0.838 34 H 0.180 0.820 35 H 0.174 0.826 36 H 0.149 0.851 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.253 0.747 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.380 4.543 26.903 29.961 hybrid contribution 1.596 0.977 0.068 1.872 sum -10.784 5.521 26.970 29.566 Atomic orbital electron populations 1.22161 0.92729 1.04616 1.02729 1.22176 0.96795 0.77969 1.05914 1.45441 1.53504 1.13652 1.04096 1.19234 1.05028 0.92619 0.90364 1.20321 1.03958 1.01635 0.87721 1.21351 0.97380 0.92077 1.00791 1.21036 1.00442 0.98704 0.94250 1.20287 0.99871 0.97629 0.92456 1.19490 1.05961 0.95379 0.90003 1.70227 1.22230 1.18272 1.12105 1.23310 0.98660 0.87361 0.90644 1.19178 0.87054 1.00302 0.81186 0.87939 1.22094 0.95455 1.01694 1.01553 1.45790 1.29809 1.34689 1.25949 1.19973 0.84932 0.81725 0.80367 1.90684 1.53991 1.29164 1.69135 1.23368 0.99094 1.05087 1.00698 1.85443 1.37418 1.42210 1.26076 1.23233 1.13325 1.18949 1.13988 0.90147 1.26098 1.01405 0.95130 0.96428 1.70181 1.41285 1.22649 1.20495 0.84919 0.76750 0.78395 0.77972 1.18283 1.19847 1.19835 0.88178 0.91900 0.92556 0.88604 0.86964 0.83811 0.81979 0.82590 0.85132 0.91640 0.89750 0.91414 0.74750 0.87258 0.87578 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 10.24 71.98 0.74 -1.01 16 2 C 0.09 1.25 6.61 86.38 0.57 1.82 16 3 N -0.48 -9.78 2.80 -505.60 -1.42 -11.19 16 4 C 0.04 0.78 6.87 38.86 0.27 1.05 16 5 C -0.12 -1.72 10.05 22.32 0.22 -1.49 16 6 C -0.10 -1.14 10.03 22.31 0.22 -0.91 16 7 C -0.12 -1.69 9.96 22.02 0.22 -1.47 16 8 C -0.08 -1.64 10.05 22.25 0.22 -1.42 16 9 C 0.01 0.25 7.23 39.45 0.29 0.53 16 10 N -0.51 -13.98 10.90 -179.97 -1.96 -15.94 16 11 C 0.27 6.58 6.68 137.92 0.92 7.50 16 12 C 0.23 5.79 2.93 44.25 0.13 5.92 16 13 H 0.10 2.62 6.11 -2.39 -0.01 2.60 16 14 C -0.15 -3.42 9.47 71.98 0.68 -2.73 16 15 N -0.71 -20.48 5.07 -446.10 -2.26 -22.74 16 16 C 0.54 20.30 7.81 87.66 0.68 20.99 16 17 O -0.55 -24.42 15.52 -3.02 -0.05 -24.47 16 18 C -0.13 -5.35 6.16 71.24 0.44 -4.91 16 19 S -0.14 -7.68 20.57 -56.49 -1.16 -8.84 16 20 C -0.55 -31.48 9.50 67.95 0.65 -30.84 16 21 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 22 C 0.01 0.82 5.49 84.86 0.47 1.28 16 23 N -0.91 -55.75 13.22 21.65 0.29 -55.46 16 24 Si 1.00 43.99 29.55 68.60 2.03 46.02 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 28 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.72 7.68 -2.39 -0.02 0.70 16 31 H 0.10 1.36 6.87 -2.39 -0.02 1.34 16 32 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 35 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 36 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 37 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 38 H 0.08 1.56 7.68 -2.39 -0.02 1.54 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.42 11.05 8.30 -92.71 -0.77 10.28 16 41 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 42 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 43 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -78.10 380.00 2.44 -75.65 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.26 Total: 22.67 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 6.72 Total: -5.71 kcal Atomic # 7 Polarization: -99.98 SS G_CDS: -5.35 Total: -105.34 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.05 Total: -24.47 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -7.68 SS G_CDS: -1.16 Total: -8.84 kcal Total: -78.10 2.44 -75.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194782067.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.941 kcal (2) G-P(sol) polarization free energy of solvation -78.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds