Wall clock time and date at job start Tue Mar 31 2020 17:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46704 * 2 1 4 4 N 1.46499 * 109.47344 * 119.99650 * 2 1 3 5 5 C 1.36045 * 126.34635 * 120.54551 * 4 2 1 6 6 C 1.50700 * 124.94881 * 359.96354 * 5 4 2 7 7 N 1.46504 * 109.46859 * 266.72811 * 6 5 4 8 8 C 1.34776 * 119.99913 * 179.97438 * 7 6 5 9 9 O 1.21280 * 120.00059 * 0.02562 * 8 7 6 10 10 C 1.50705 * 120.00065 * 179.97438 * 8 7 6 11 11 S 1.80998 * 109.47235 * 180.02562 * 10 8 7 12 12 C 1.76198 * 99.99931 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00260 * 0.02562 * 12 11 10 14 14 C 1.38799 * 120.00073 * 179.97438 * 12 11 10 15 15 N 1.31623 * 120.00162 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99815 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.46897 * 89.99853 * 16 14 12 18 18 H 1.48498 * 109.46797 * 209.99725 * 16 14 12 19 19 H 1.48504 * 109.46923 * 329.99899 * 16 14 12 20 20 N 1.30108 * 110.09655 * 180.02562 * 5 4 2 21 21 C 1.35783 * 109.64408 * 359.92580 * 20 5 4 22 22 C 1.39747 * 133.59923 * 180.02562 * 21 20 5 23 23 C 1.36600 * 119.88334 * 179.97438 * 22 21 20 24 24 C 1.38777 * 120.67278 * 359.97438 * 23 22 21 25 25 C 1.37857 * 120.44742 * 0.02562 * 24 23 22 26 26 C 1.38050 * 126.35465 * 300.49320 * 4 2 1 27 27 H 1.08998 * 109.47233 * 305.15981 * 1 2 3 28 28 H 1.08998 * 109.47175 * 65.16349 * 1 2 3 29 29 H 1.09005 * 109.46337 * 185.16429 * 1 2 3 30 30 H 1.09000 * 109.47282 * 240.00552 * 2 1 3 31 31 H 1.09006 * 109.46469 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47346 * 299.99563 * 3 2 1 33 33 H 1.09000 * 109.47257 * 60.00530 * 3 2 1 34 34 H 1.08993 * 109.47247 * 26.72573 * 6 5 4 35 35 H 1.09000 * 109.47228 * 146.73201 * 6 5 4 36 36 H 0.97002 * 120.00006 * 0.02562 * 7 6 5 37 37 H 1.09002 * 109.46580 * 300.00537 * 10 8 7 38 38 H 1.09000 * 109.46789 * 60.00227 * 10 8 7 39 39 H 0.97000 * 120.00275 * 179.97438 * 15 14 12 40 40 H 1.08003 * 120.05503 * 0.24404 * 22 21 20 41 41 H 1.08001 * 119.65784 * 180.02562 * 23 22 21 42 42 H 1.07992 * 119.77292 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.15162 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.8123 -1.7951 1.2219 6 6 3.3345 -2.5115 0.0033 7 7 2.4210 -3.6004 -0.3518 8 6 2.6868 -4.3828 -1.4165 9 8 3.6824 -4.1857 -2.0804 10 6 1.7474 -5.5033 -1.7815 11 16 2.3744 -6.3637 -3.2453 12 6 1.1203 -7.5855 -3.4427 13 1 0.2893 -7.6225 -2.7539 14 6 1.1997 -8.4996 -4.4841 15 7 0.2631 -9.4126 -4.6313 16 14 2.6367 -8.4350 -5.6760 17 1 3.7387 -9.2920 -5.1695 18 1 2.1985 -8.9273 -7.0067 19 1 3.1151 -7.0346 -5.7990 20 7 3.0538 -2.1434 2.4520 21 6 2.4322 -1.2844 3.3002 22 6 2.3562 -1.1907 4.6924 23 6 1.6322 -0.1857 5.2684 24 6 0.9687 0.7478 4.4847 25 6 1.0296 0.6749 3.1094 26 6 1.7593 -0.3406 2.5062 27 1 -0.3633 0.5918 0.8401 28 1 -0.3633 0.4316 -0.9326 29 1 -0.3632 -1.0236 0.0925 30 1 1.8934 -0.5137 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.4045 -1.8103 -0.8282 35 1 4.3217 -2.9208 0.2176 36 1 1.6244 -3.7578 0.1790 37 1 1.6781 -6.2046 -0.9500 38 1 0.7598 -5.0944 -1.9952 39 1 0.3184 -10.0512 -5.3593 40 1 2.8726 -1.9091 5.3119 41 1 1.5763 -0.1165 6.3448 42 1 0.4008 1.5366 4.9554 43 1 0.5111 1.4037 2.5041 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265608137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:54 Heat of formation + Delta-G solvation = 32.546326 kcal Electronic energy + Delta-G solvation = -25300.948396 eV Core-core repulsion = 21665.970326 eV Total energy + Delta-G solvation = -3634.978070 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.63421 -39.36214 -37.86222 -36.42572 -34.73111 -32.45491 -31.91486 -30.89447 -30.12615 -29.19179 -27.83646 -26.60000 -25.59788 -23.54322 -22.41785 -21.75621 -20.64785 -20.32850 -18.06296 -17.68924 -17.18665 -16.60716 -16.45088 -15.67101 -15.41254 -15.25555 -15.08233 -14.95054 -14.69973 -14.01884 -13.88665 -13.74160 -13.52983 -13.50594 -13.11636 -12.92616 -12.82483 -12.80116 -12.38302 -12.15159 -11.98272 -11.83555 -11.77916 -11.43149 -11.28572 -11.02140 -10.67590 -10.64408 -10.19509 -9.89229 -9.69398 -9.18823 -9.01286 -8.63710 -8.53109 -8.40180 -6.94237 -6.30234 -4.02464 0.57999 1.22262 2.13727 2.27374 2.79516 2.86162 3.30196 3.33683 3.48781 3.56887 3.63593 3.76500 4.01965 4.03600 4.31572 4.37215 4.47342 4.64759 4.66174 4.70364 4.85736 4.96195 4.99244 5.05202 5.08809 5.12657 5.16543 5.17066 5.27708 5.33363 5.47204 5.47829 5.58620 5.62634 5.72316 5.81672 5.97944 6.12495 6.20566 6.23814 6.27468 6.56467 6.76998 7.43941 7.58475 7.92733 8.34478 8.40600 9.15705 10.78985 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.002329 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.605179 B =12018.763523 C =12339.287733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.127 3.873 3 C -0.165 4.165 4 N -0.475 5.475 5 C 0.267 3.733 6 C 0.202 3.798 7 N -0.732 5.732 8 C 0.536 3.464 9 O -0.515 6.515 10 C -0.123 4.123 11 S -0.139 6.139 12 C -0.522 4.522 13 H 0.088 0.912 14 C 0.096 3.904 15 N -0.880 5.880 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 N -0.473 5.473 21 C 0.042 3.958 22 C -0.060 4.060 23 C -0.132 4.132 24 C -0.102 4.102 25 C -0.111 4.111 26 C 0.058 3.942 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.403 0.597 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.045 25.307 16.586 30.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.025 3.975 3 C -0.223 4.223 4 N -0.165 5.165 5 C 0.001 3.999 6 C 0.077 3.923 7 N -0.388 5.388 8 C 0.322 3.678 9 O -0.389 6.389 10 C -0.274 4.274 11 S 0.087 5.913 12 C -0.670 4.670 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.516 5.516 16 Si 0.682 3.318 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 N -0.192 5.192 21 C -0.077 4.077 22 C -0.079 4.079 23 C -0.152 4.152 24 C -0.122 4.122 25 C -0.132 4.132 26 C -0.051 4.051 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.237 0.763 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.006 24.860 15.492 29.360 hybrid contribution -1.622 0.158 0.229 1.645 sum 0.384 25.017 15.721 29.549 Atomic orbital electron populations 1.22204 0.92985 1.03579 1.03491 1.21543 0.95856 0.94117 0.85996 1.22216 1.02284 0.94325 1.03499 1.45565 1.41166 1.24491 1.05278 1.23449 0.93784 0.87617 0.95052 1.19568 0.94493 0.88617 0.89640 1.45936 1.27730 1.33248 1.31922 1.20305 0.86415 0.82035 0.79044 1.90718 1.27539 1.69950 1.50729 1.23270 1.01412 0.98250 1.04447 1.84778 1.36457 1.38562 1.31505 1.22309 1.09909 1.16344 1.18389 0.89358 1.24716 0.96120 0.93809 0.96678 1.69934 1.33131 1.16987 1.31579 0.86734 0.82770 0.81501 0.80833 1.19163 1.19947 1.15920 1.70462 1.23863 1.26461 0.98445 1.19089 1.00061 0.94327 0.94211 1.20058 0.98601 0.98414 0.90848 1.20642 0.99021 0.95465 1.00072 1.20909 0.99599 0.99228 0.92448 1.20024 1.01007 0.97474 0.94704 1.18826 1.02682 0.99699 0.83933 0.91626 0.90107 0.91455 0.87445 0.91617 0.90129 0.91575 0.89545 0.87777 0.76272 0.88243 0.88389 0.91916 0.85313 0.85382 0.85370 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.19 37.16 0.34 -0.69 16 2 C 0.13 0.91 3.50 -67.93 -0.24 0.67 16 3 C -0.17 -0.94 9.26 37.16 0.34 -0.60 16 4 N -0.47 -4.60 2.65 -104.11 -0.28 -4.87 16 5 C 0.27 3.07 7.22 -154.82 -1.12 1.95 16 6 C 0.20 2.32 5.87 -5.19 -0.03 2.29 16 7 N -0.73 -9.31 5.55 -61.47 -0.34 -9.65 16 8 C 0.54 9.11 7.85 -10.98 -0.09 9.03 16 9 O -0.52 -10.54 15.86 5.56 0.09 -10.45 16 10 C -0.12 -2.32 6.16 36.01 0.22 -2.10 16 11 S -0.14 -3.47 18.55 -107.50 -1.99 -5.46 16 12 C -0.52 -14.90 10.04 30.94 0.31 -14.59 16 13 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 14 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 15 N -0.88 -26.44 13.97 55.49 0.78 -25.66 16 16 Si 0.86 21.60 27.74 -169.99 -4.72 16.89 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.24 -5.89 6.74 56.52 0.38 -5.50 16 20 N -0.47 -6.36 11.27 -8.23 -0.09 -6.46 16 21 C 0.04 0.51 7.23 -84.70 -0.61 -0.10 16 22 C -0.06 -0.59 10.05 -39.61 -0.40 -0.99 16 23 C -0.13 -1.01 9.96 -39.97 -0.40 -1.41 16 24 C -0.10 -0.73 10.03 -39.52 -0.40 -1.12 16 25 C -0.11 -0.90 8.87 -39.50 -0.35 -1.25 16 26 C 0.06 0.60 6.22 -83.99 -0.52 0.08 16 27 H 0.06 0.39 6.44 -51.93 -0.33 0.05 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.11 0.76 6.55 -51.93 -0.34 0.42 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.37 6.38 -51.93 -0.33 0.04 16 34 H 0.09 0.89 6.89 -51.93 -0.36 0.53 16 35 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.40 4.50 8.46 -40.82 -0.35 4.15 16 37 H 0.10 1.78 8.14 -51.91 -0.42 1.36 16 38 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 41 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.12 0.74 6.00 -52.49 -0.32 0.43 16 LS Contribution 371.73 15.07 5.60 5.60 Total: -1.00 -34.82 371.73 -9.81 -44.64 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.83 Total: 1.60 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -3.03 Total: -6.17 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.06 Total: -46.65 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.72 Total: 16.89 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.46 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.82 -9.81 -44.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265608137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.183 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds