Wall clock time and date at job start Tue Mar 31 2020 17:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46704 * 2 1 4 4 N 1.46499 * 109.47344 * 119.99650 * 2 1 3 5 5 C 1.36045 * 126.34635 * 120.54551 * 4 2 1 6 6 C 1.50700 * 124.94881 * 359.96354 * 5 4 2 7 7 N 1.46504 * 109.46859 * 266.72811 * 6 5 4 8 8 C 1.34776 * 119.99913 * 179.97438 * 7 6 5 9 9 O 1.21280 * 120.00059 * 0.02562 * 8 7 6 10 10 C 1.50705 * 120.00065 * 179.97438 * 8 7 6 11 11 S 1.80998 * 109.47235 * 180.02562 * 10 8 7 12 12 C 1.76198 * 99.99931 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00260 * 0.02562 * 12 11 10 14 14 C 1.38799 * 120.00073 * 179.97438 * 12 11 10 15 15 N 1.31623 * 120.00162 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99815 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.46897 * 89.99853 * 16 14 12 18 18 H 1.48498 * 109.46797 * 209.99725 * 16 14 12 19 19 H 1.48504 * 109.46923 * 329.99899 * 16 14 12 20 20 N 1.30108 * 110.09655 * 180.02562 * 5 4 2 21 21 C 1.35783 * 109.64408 * 359.92580 * 20 5 4 22 22 C 1.39747 * 133.59923 * 180.02562 * 21 20 5 23 23 C 1.36600 * 119.88334 * 179.97438 * 22 21 20 24 24 C 1.38777 * 120.67278 * 359.97438 * 23 22 21 25 25 C 1.37857 * 120.44742 * 0.02562 * 24 23 22 26 26 C 1.38050 * 126.35465 * 300.49320 * 4 2 1 27 27 H 1.08998 * 109.47233 * 305.15981 * 1 2 3 28 28 H 1.08998 * 109.47175 * 65.16349 * 1 2 3 29 29 H 1.09005 * 109.46337 * 185.16429 * 1 2 3 30 30 H 1.09000 * 109.47282 * 240.00552 * 2 1 3 31 31 H 1.09006 * 109.46469 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47346 * 299.99563 * 3 2 1 33 33 H 1.09000 * 109.47257 * 60.00530 * 3 2 1 34 34 H 1.08993 * 109.47247 * 26.72573 * 6 5 4 35 35 H 1.09000 * 109.47228 * 146.73201 * 6 5 4 36 36 H 0.97002 * 120.00006 * 0.02562 * 7 6 5 37 37 H 1.09002 * 109.46580 * 300.00537 * 10 8 7 38 38 H 1.09000 * 109.46789 * 60.00227 * 10 8 7 39 39 H 0.97000 * 120.00275 * 179.97438 * 15 14 12 40 40 H 1.08003 * 120.05503 * 0.24404 * 22 21 20 41 41 H 1.08001 * 119.65784 * 180.02562 * 23 22 21 42 42 H 1.07992 * 119.77292 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.15162 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.8123 -1.7951 1.2219 6 6 3.3345 -2.5115 0.0033 7 7 2.4210 -3.6004 -0.3518 8 6 2.6868 -4.3828 -1.4165 9 8 3.6824 -4.1857 -2.0804 10 6 1.7474 -5.5033 -1.7815 11 16 2.3744 -6.3637 -3.2453 12 6 1.1203 -7.5855 -3.4427 13 1 0.2893 -7.6225 -2.7539 14 6 1.1997 -8.4996 -4.4841 15 7 0.2631 -9.4126 -4.6313 16 14 2.6367 -8.4350 -5.6760 17 1 3.7387 -9.2920 -5.1695 18 1 2.1985 -8.9273 -7.0067 19 1 3.1151 -7.0346 -5.7990 20 7 3.0538 -2.1434 2.4520 21 6 2.4322 -1.2844 3.3002 22 6 2.3562 -1.1907 4.6924 23 6 1.6322 -0.1857 5.2684 24 6 0.9687 0.7478 4.4847 25 6 1.0296 0.6749 3.1094 26 6 1.7593 -0.3406 2.5062 27 1 -0.3633 0.5918 0.8401 28 1 -0.3633 0.4316 -0.9326 29 1 -0.3632 -1.0236 0.0925 30 1 1.8934 -0.5137 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.4045 -1.8103 -0.8282 35 1 4.3217 -2.9208 0.2176 36 1 1.6244 -3.7578 0.1790 37 1 1.6781 -6.2046 -0.9500 38 1 0.7598 -5.0944 -1.9952 39 1 0.3184 -10.0512 -5.3593 40 1 2.8726 -1.9091 5.3119 41 1 1.5763 -0.1165 6.3448 42 1 0.4008 1.5366 4.9554 43 1 0.5111 1.4037 2.5041 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265608137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:54 Heat of formation + Delta-G solvation = 10.318669 kcal Electronic energy + Delta-G solvation = -25301.912260 eV Core-core repulsion = 21665.970326 eV Total energy + Delta-G solvation = -3635.941933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.38081 -40.70773 -38.53831 -37.07089 -35.91073 -34.67272 -32.56492 -32.06412 -30.81273 -30.28272 -28.29187 -27.94360 -27.46724 -24.16195 -23.14965 -22.48224 -21.97342 -21.03297 -19.93231 -18.50823 -18.08892 -17.83178 -17.49579 -17.08041 -16.68691 -16.51339 -16.07205 -15.72682 -15.62208 -15.30573 -14.95340 -14.78584 -14.69072 -14.58524 -14.30726 -14.02487 -13.56044 -13.41592 -13.33998 -13.25336 -13.01278 -12.90149 -12.75963 -12.65761 -12.41657 -12.38450 -12.01310 -11.86571 -11.36904 -11.17154 -11.16874 -10.97656 -10.55060 -10.36431 -9.35476 -9.10348 -8.99715 -8.51371 -6.22398 -0.13720 0.55934 0.94769 1.32629 1.35503 1.46372 1.49320 1.50880 1.65333 2.24319 2.29895 2.70290 2.86934 2.87907 2.91157 3.32888 3.47743 3.74221 3.86560 3.92485 4.05991 4.08242 4.13289 4.21363 4.31900 4.41695 4.45177 4.48349 4.50550 4.58066 4.69720 4.72502 4.83524 4.89760 5.10030 5.12197 5.14962 5.20404 5.43698 5.58157 5.58296 5.70693 5.94559 6.05422 6.11760 6.25742 6.78608 6.93493 7.02209 8.61078 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.002329 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.605179 B =12018.763523 C =12339.287733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.120 3.880 3 C -0.160 4.160 4 N -0.468 5.468 5 C 0.256 3.744 6 C 0.208 3.792 7 N -0.710 5.710 8 C 0.546 3.454 9 O -0.551 6.551 10 C -0.112 4.112 11 S -0.167 6.167 12 C -0.530 4.530 13 H 0.061 0.939 14 C 0.044 3.956 15 N -0.918 5.918 16 Si 0.915 3.085 17 H -0.263 1.263 18 H -0.259 1.259 19 H -0.233 1.233 20 N -0.508 5.508 21 C 0.005 3.995 22 C -0.083 4.083 23 C -0.124 4.124 24 C -0.095 4.095 25 C -0.115 4.115 26 C 0.050 3.950 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.107 0.893 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.413 0.587 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.277 0.723 40 H 0.128 0.872 41 H 0.156 0.844 42 H 0.163 0.837 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.514 28.053 17.348 32.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 C -0.218 4.218 4 N -0.158 5.158 5 C -0.009 4.009 6 C 0.083 3.917 7 N -0.365 5.365 8 C 0.331 3.669 9 O -0.429 6.429 10 C -0.263 4.263 11 S 0.060 5.940 12 C -0.678 4.678 13 H 0.079 0.921 14 C -0.161 4.161 15 N -0.555 5.555 16 Si 0.737 3.263 17 H -0.188 1.188 18 H -0.184 1.184 19 H -0.157 1.157 20 N -0.229 5.229 21 C -0.113 4.113 22 C -0.102 4.102 23 C -0.144 4.144 24 C -0.115 4.115 25 C -0.136 4.136 26 C -0.060 4.060 27 H 0.090 0.910 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.125 0.875 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.249 0.751 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.086 0.914 40 H 0.146 0.854 41 H 0.173 0.827 42 H 0.180 0.820 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.505 27.633 16.281 32.108 hybrid contribution -1.571 -0.564 0.224 1.684 sum -0.066 27.069 16.504 31.704 Atomic orbital electron populations 1.22189 0.92091 1.02873 1.04679 1.21797 0.96546 0.94791 0.84960 1.22194 1.01626 0.93349 1.04613 1.45669 1.40345 1.23847 1.05896 1.23211 0.94774 0.88554 0.94390 1.19561 0.93544 0.88226 0.90388 1.45663 1.27955 1.32517 1.30319 1.19854 0.85449 0.81888 0.79682 1.90711 1.28847 1.71001 1.52299 1.23249 1.02483 0.98729 1.01800 1.84649 1.35828 1.38195 1.35354 1.22466 1.10066 1.17475 1.17779 0.92063 1.25587 0.98590 0.93520 0.98398 1.70016 1.34938 1.17924 1.32671 0.85858 0.79629 0.81581 0.79251 1.18812 1.18364 1.15717 1.70360 1.25089 1.27895 0.99510 1.19491 1.01356 0.95234 0.95263 1.20291 0.99923 0.99707 0.90326 1.21019 0.97492 0.94317 1.01619 1.21376 0.98650 0.99357 0.92105 1.20377 1.00565 0.97151 0.95509 1.19110 1.02961 1.00053 0.83884 0.91007 0.88418 0.92986 0.87526 0.92609 0.88190 0.91230 0.88015 0.88702 0.75103 0.87138 0.86534 0.91365 0.85380 0.82661 0.81989 0.83863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.19 71.98 0.66 -1.01 16 2 C 0.12 1.51 3.50 44.99 0.16 1.67 16 3 C -0.16 -1.47 9.26 71.98 0.67 -0.81 16 4 N -0.47 -8.63 2.65 -483.29 -1.28 -9.91 16 5 C 0.26 5.87 7.22 137.92 1.00 6.87 16 6 C 0.21 4.69 5.87 85.63 0.50 5.19 16 7 N -0.71 -17.46 5.55 -466.78 -2.59 -20.05 16 8 C 0.55 18.11 7.85 87.66 0.69 18.80 16 9 O -0.55 -22.28 15.86 -3.03 -0.05 -22.33 16 10 C -0.11 -4.13 6.16 71.24 0.44 -3.69 16 11 S -0.17 -8.28 18.55 -56.49 -1.05 -9.32 16 12 C -0.53 -30.69 10.04 67.95 0.68 -30.01 16 13 H 0.06 3.75 8.03 -2.91 -0.02 3.73 16 14 C 0.04 2.60 5.50 84.86 0.47 3.06 16 15 N -0.92 -55.83 13.97 21.65 0.30 -55.53 16 16 Si 0.92 44.63 27.74 68.60 1.90 46.53 16 17 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.23 -11.24 6.74 99.48 0.67 -10.57 16 20 N -0.51 -13.96 11.27 -179.96 -2.03 -15.98 16 21 C 0.01 0.12 7.23 39.45 0.29 0.41 16 22 C -0.08 -1.62 10.05 22.25 0.22 -1.39 16 23 C -0.12 -1.62 9.96 22.02 0.22 -1.40 16 24 C -0.10 -1.05 10.03 22.31 0.22 -0.82 16 25 C -0.12 -1.58 8.87 22.32 0.20 -1.38 16 26 C 0.05 0.98 6.22 38.86 0.24 1.22 16 27 H 0.07 0.65 6.44 -2.39 -0.02 0.64 16 28 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.11 1.34 6.55 -2.39 -0.02 1.33 16 31 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.60 6.38 -2.39 -0.02 0.58 16 34 H 0.10 2.01 6.89 -2.39 -0.02 1.99 16 35 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.41 8.80 8.46 -92.71 -0.78 8.01 16 37 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 38 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 39 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 40 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.16 0.68 8.06 -2.91 -0.02 0.65 16 43 H 0.14 1.26 6.00 -2.91 -0.02 1.24 16 Total: -1.00 -76.67 371.73 2.08 -74.59 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.22 Total: 15.30 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 6.65 Total: -3.29 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -5.60 Total: -101.48 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.05 Total: -22.33 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.53 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.05 Total: -9.32 kcal Total: -76.67 2.08 -74.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265608137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.909 kcal (2) G-P(sol) polarization free energy of solvation -76.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds