Wall clock time and date at job start Tue Mar 31 2020 18:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47131 * 2 1 4 4 O 1.42906 * 109.46876 * 119.99457 * 2 1 3 5 5 C 1.35946 * 117.00001 * 275.32729 * 4 2 1 6 6 C 1.38706 * 120.03347 * 5.09151 * 5 4 2 7 7 C 1.38145 * 119.97330 * 179.78680 * 6 5 4 8 8 C 1.38461 * 120.02528 * 0.47874 * 7 6 5 9 9 F 1.35103 * 119.96789 * 179.72190 * 8 7 6 10 10 C 1.38447 * 120.06131 * 359.75331 * 8 7 6 11 11 C 1.38149 * 120.03173 * 0.02562 * 10 8 7 12 12 C 1.50694 * 109.47282 * 239.99297 * 2 1 3 13 13 O 1.21287 * 120.00474 * 244.99894 * 12 2 1 14 14 N 1.34781 * 119.99396 * 65.00199 * 12 2 1 15 15 C 1.40158 * 119.99448 * 179.97438 * 14 12 2 16 16 C 1.40412 * 125.97935 * 0.02562 * 15 14 12 17 17 C 1.35231 * 107.86676 * 179.73483 * 16 15 14 18 18 N 1.34968 * 107.86797 * 0.39255 * 17 16 15 19 19 C 1.46498 * 125.97827 * 179.87040 * 18 17 16 20 20 C 1.50705 * 109.46992 * 124.71373 * 19 18 17 21 21 H 1.07998 * 119.99777 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00172 * 180.02562 * 20 19 18 23 23 N 1.31510 * 119.99754 * 359.72560 * 22 20 19 24 24 Si 1.86796 * 119.99961 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47157 * 269.72313 * 24 22 20 26 26 H 1.48493 * 109.47231 * 29.72571 * 24 22 20 27 27 H 1.48504 * 109.47090 * 149.72469 * 24 22 20 28 28 N 1.31230 * 125.97130 * 179.97438 * 15 14 12 29 29 H 1.09000 * 109.47172 * 60.00459 * 1 2 3 30 30 H 1.09001 * 109.47315 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47236 * 300.00360 * 1 2 3 32 32 H 1.07999 * 120.01172 * 359.97438 * 6 5 4 33 33 H 1.07991 * 119.98642 * 180.20610 * 7 6 5 34 34 H 1.08004 * 119.98436 * 179.97438 * 10 8 7 35 35 H 1.08008 * 120.01706 * 179.97438 * 11 10 8 36 36 H 0.96998 * 120.00661 * 0.02562 * 14 12 2 37 37 H 1.07999 * 126.05937 * 359.97438 * 16 15 14 38 38 H 1.08006 * 126.06504 * 180.26091 * 17 16 15 39 39 H 1.09001 * 109.47202 * 4.71867 * 19 18 17 40 40 H 1.08989 * 109.47203 * 244.71105 * 19 18 17 41 41 H 0.97003 * 120.00434 * 0.27142 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1060 0.0613 2.3063 6 6 1.6541 1.3725 2.3284 7 6 1.7519 2.1168 3.4881 8 6 2.3099 1.5575 4.6252 9 9 2.4101 2.2882 5.7572 10 6 2.7657 0.2504 4.6032 11 6 2.6649 -0.4976 3.4461 12 6 2.0323 -0.7105 -1.2303 13 8 2.6530 -1.7468 -1.1213 14 7 1.7919 -0.1943 -2.4519 15 6 2.2596 -0.8549 -3.5962 16 6 2.9873 -2.0555 -3.6160 17 6 3.2437 -2.3639 -4.9075 18 7 2.7087 -1.3942 -5.6789 19 6 2.7575 -1.3332 -7.1418 20 6 1.3572 -1.2171 -7.6867 21 1 0.5152 -1.1918 -7.0109 22 6 1.1510 -1.1443 -9.0480 23 7 2.1767 -1.1707 -9.8707 24 14 -0.5847 -1.0011 -9.7234 25 1 -1.1337 -2.3588 -9.9695 26 1 -1.4415 -0.2914 -8.7399 27 1 -0.5587 -0.2392 -10.9978 28 7 2.0930 -0.4598 -4.8365 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.2231 1.8105 1.4402 33 1 1.3971 3.1366 3.5065 34 1 3.2011 -0.1845 5.4908 35 1 3.0210 -1.5171 3.4290 36 1 1.2958 0.6347 -2.5392 37 1 3.2856 -2.6324 -2.7532 38 1 3.7829 -3.2312 -5.2591 39 1 3.2236 -2.2397 -7.5280 40 1 3.3404 -0.4653 -7.4500 41 1 3.0780 -1.2454 -9.5201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265617842.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:19 Heat of formation + Delta-G solvation = -4.968941 kcal Electronic energy + Delta-G solvation = -26749.938012 eV Core-core repulsion = 22547.119982 eV Total energy + Delta-G solvation = -4202.818030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.18817 -41.19277 -40.58563 -39.31719 -37.53684 -35.01857 -33.83140 -32.66882 -31.52716 -30.71739 -29.65937 -29.45447 -26.53089 -25.20440 -23.84857 -23.19005 -22.64303 -21.48983 -20.52239 -19.70620 -18.87430 -17.86177 -17.64005 -17.24364 -16.64340 -16.42773 -16.21189 -15.86740 -15.48532 -15.12820 -14.89655 -14.74483 -14.23088 -14.03697 -13.83278 -13.76637 -13.58202 -13.24350 -13.17630 -12.85033 -12.66873 -12.50987 -12.28938 -12.16265 -11.85272 -11.40344 -11.24482 -11.21064 -10.86082 -10.57251 -10.21407 -10.14742 -9.73191 -9.64507 -9.06286 -8.62344 -8.53815 -8.31027 -7.63121 -6.62583 -4.36980 0.68340 0.76543 2.05482 2.06673 2.73462 2.99478 3.11628 3.33597 3.37353 3.51858 3.53619 3.64672 3.88804 4.11909 4.24056 4.31146 4.35605 4.37357 4.44758 4.65461 4.82731 4.97544 5.10900 5.13383 5.20129 5.36895 5.41237 5.59794 5.61913 5.66448 5.70737 5.76090 6.04379 6.20967 6.31723 6.39907 6.51773 6.68706 6.85784 7.18377 7.36025 7.62741 7.75464 7.99961 8.29129 8.44493 8.56394 9.31294 10.75087 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.028861 B = 0.001900 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.927962 B =14735.425860 C =15246.862619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.073 3.927 3 H 0.104 0.896 4 O -0.279 6.279 5 C 0.125 3.875 6 C -0.185 4.185 7 C -0.111 4.111 8 C 0.057 3.943 9 F -0.142 7.142 10 C -0.112 4.112 11 C -0.119 4.119 12 C 0.523 3.477 13 O -0.491 6.491 14 N -0.625 5.625 15 C 0.258 3.742 16 C -0.285 4.285 17 C 0.053 3.947 18 N -0.315 5.315 19 C 0.248 3.752 20 C -0.609 4.609 21 H 0.064 0.936 22 C 0.023 3.977 23 N -0.904 5.904 24 Si 1.079 2.921 25 H -0.285 1.285 26 H -0.287 1.287 27 H -0.281 1.281 28 N -0.298 5.298 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.412 0.588 37 H 0.162 0.838 38 H 0.169 0.831 39 H 0.047 0.953 40 H 0.035 0.965 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.066 4.893 26.487 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.013 3.987 3 H 0.121 0.879 4 O -0.191 6.191 5 C 0.079 3.921 6 C -0.204 4.204 7 C -0.130 4.130 8 C 0.037 3.963 9 F -0.121 7.121 10 C -0.130 4.130 11 C -0.138 4.138 12 C 0.307 3.693 13 O -0.362 6.362 14 N -0.274 5.274 15 C 0.005 3.995 16 C -0.316 4.316 17 C -0.097 4.097 18 N -0.097 5.097 19 C 0.130 3.870 20 C -0.647 4.647 21 H 0.082 0.918 22 C -0.182 4.182 23 N -0.540 5.540 24 Si 0.907 3.093 25 H -0.212 1.212 26 H -0.212 1.212 27 H -0.207 1.207 28 N -0.129 5.129 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.247 0.753 37 H 0.179 0.821 38 H 0.186 0.814 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.909 4.972 24.291 24.868 hybrid contribution 0.938 0.042 1.950 2.165 sum -0.971 5.014 26.242 26.734 Atomic orbital electron populations 1.22395 0.91965 1.05110 1.04261 1.22121 0.96075 0.96891 0.83656 0.87892 1.86239 1.80832 1.36677 1.15371 1.19076 0.95701 0.90335 0.86966 1.21200 1.05679 0.93921 0.99594 1.20944 0.99632 1.00941 0.91444 1.17600 1.04623 0.90737 0.83309 1.91498 1.94513 1.77039 1.49021 1.20984 1.00460 0.92520 0.99076 1.20335 1.01788 1.01602 0.90060 1.19913 0.80474 0.85748 0.83175 1.90696 1.37795 1.22205 1.85550 1.42205 1.55732 1.26777 1.02683 1.19021 0.99829 0.94267 0.86385 1.21537 1.12412 1.00337 0.97316 1.22579 1.00486 0.95605 0.91047 1.48811 1.38054 1.15158 1.07666 1.19793 1.00076 0.98160 0.68945 1.22119 0.91373 1.56428 0.94758 0.91785 1.25931 1.06142 0.93188 0.92942 1.70822 0.99660 1.45708 1.37775 0.83380 0.73203 0.77010 0.75756 1.21185 1.21248 1.20692 1.77358 1.21806 1.16131 0.97643 0.89728 0.90126 0.90289 0.84104 0.84327 0.83928 0.83776 0.75253 0.82114 0.81357 0.93532 0.94681 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 9.12 37.16 0.34 -0.90 16 2 C 0.07 0.66 2.64 -27.89 -0.07 0.59 16 3 H 0.10 0.66 6.31 -51.93 -0.33 0.33 16 4 O -0.28 -3.04 9.34 -39.43 -0.37 -3.41 16 5 C 0.13 1.13 6.60 -39.24 -0.26 0.87 16 6 C -0.19 -1.33 8.23 -39.44 -0.32 -1.65 16 7 C -0.11 -0.79 10.02 -39.53 -0.40 -1.18 16 8 C 0.06 0.46 7.30 -39.42 -0.29 0.17 16 9 F -0.14 -1.28 17.27 2.25 0.04 -1.24 16 10 C -0.11 -0.82 10.02 -39.54 -0.40 -1.22 16 11 C -0.12 -0.97 9.98 -39.44 -0.39 -1.37 16 12 C 0.52 7.04 7.15 -10.99 -0.08 6.96 16 13 O -0.49 -8.49 13.64 -14.31 -0.20 -8.69 16 14 N -0.62 -8.80 5.41 -11.13 -0.06 -8.86 16 15 C 0.26 4.95 8.11 -154.38 -1.25 3.70 16 16 C -0.28 -5.48 9.61 -39.83 -0.38 -5.87 16 17 C 0.05 1.02 11.43 -17.24 -0.20 0.83 16 18 N -0.32 -7.17 3.67 -62.56 -0.23 -7.40 16 19 C 0.25 6.15 5.57 -5.19 -0.03 6.12 16 20 C -0.61 -16.79 9.24 -34.44 -0.32 -17.10 16 21 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 22 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 23 N -0.90 -25.95 13.65 55.43 0.76 -25.20 16 24 Si 1.08 24.54 29.90 -169.99 -5.08 19.45 16 25 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 N -0.30 -6.66 12.42 31.44 0.39 -6.27 16 29 H 0.08 0.46 7.93 -51.93 -0.41 0.05 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.42 6.90 -51.92 -0.36 0.06 16 32 H 0.14 0.70 5.43 -52.49 -0.28 0.42 16 33 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 35 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 36 H 0.41 4.41 8.61 -40.82 -0.35 4.06 16 37 H 0.16 3.02 5.92 -52.49 -0.31 2.71 16 38 H 0.17 2.66 8.06 -52.48 -0.42 2.24 16 39 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 40 H 0.04 0.90 8.00 -51.94 -0.42 0.49 16 41 H 0.27 7.50 7.22 -40.82 -0.29 7.21 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -34.24 359.53 -7.97 -42.21 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.49 Total: 3.52 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -4.15 Total: -9.53 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.86 Total: -47.73 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.56 Total: -12.09 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.45 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.24 -7.97 -42.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265617842.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.238 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds