Wall clock time and date at job start Tue Mar 31 2020 18:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47131 * 2 1 4 4 O 1.42906 * 109.46876 * 119.99457 * 2 1 3 5 5 C 1.35946 * 117.00001 * 275.32729 * 4 2 1 6 6 C 1.38706 * 120.03347 * 5.09151 * 5 4 2 7 7 C 1.38145 * 119.97330 * 179.78680 * 6 5 4 8 8 C 1.38461 * 120.02528 * 0.47874 * 7 6 5 9 9 F 1.35103 * 119.96789 * 179.72190 * 8 7 6 10 10 C 1.38447 * 120.06131 * 359.75331 * 8 7 6 11 11 C 1.38149 * 120.03173 * 0.02562 * 10 8 7 12 12 C 1.50694 * 109.47282 * 239.99297 * 2 1 3 13 13 O 1.21287 * 120.00474 * 244.99894 * 12 2 1 14 14 N 1.34781 * 119.99396 * 65.00199 * 12 2 1 15 15 C 1.40158 * 119.99448 * 179.97438 * 14 12 2 16 16 C 1.40412 * 125.97935 * 0.02562 * 15 14 12 17 17 C 1.35231 * 107.86676 * 179.73483 * 16 15 14 18 18 N 1.34968 * 107.86797 * 0.39255 * 17 16 15 19 19 C 1.46498 * 125.97827 * 179.87040 * 18 17 16 20 20 C 1.50705 * 109.46992 * 124.71373 * 19 18 17 21 21 H 1.07998 * 119.99777 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00172 * 180.02562 * 20 19 18 23 23 N 1.31510 * 119.99754 * 359.72560 * 22 20 19 24 24 Si 1.86796 * 119.99961 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47157 * 269.72313 * 24 22 20 26 26 H 1.48493 * 109.47231 * 29.72571 * 24 22 20 27 27 H 1.48504 * 109.47090 * 149.72469 * 24 22 20 28 28 N 1.31230 * 125.97130 * 179.97438 * 15 14 12 29 29 H 1.09000 * 109.47172 * 60.00459 * 1 2 3 30 30 H 1.09001 * 109.47315 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47236 * 300.00360 * 1 2 3 32 32 H 1.07999 * 120.01172 * 359.97438 * 6 5 4 33 33 H 1.07991 * 119.98642 * 180.20610 * 7 6 5 34 34 H 1.08004 * 119.98436 * 179.97438 * 10 8 7 35 35 H 1.08008 * 120.01706 * 179.97438 * 11 10 8 36 36 H 0.96998 * 120.00661 * 0.02562 * 14 12 2 37 37 H 1.07999 * 126.05937 * 359.97438 * 16 15 14 38 38 H 1.08006 * 126.06504 * 180.26091 * 17 16 15 39 39 H 1.09001 * 109.47202 * 4.71867 * 19 18 17 40 40 H 1.08989 * 109.47203 * 244.71105 * 19 18 17 41 41 H 0.97003 * 120.00434 * 0.27142 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1060 0.0613 2.3063 6 6 1.6541 1.3725 2.3284 7 6 1.7519 2.1168 3.4881 8 6 2.3099 1.5575 4.6252 9 9 2.4101 2.2882 5.7572 10 6 2.7657 0.2504 4.6032 11 6 2.6649 -0.4976 3.4461 12 6 2.0323 -0.7105 -1.2303 13 8 2.6530 -1.7468 -1.1213 14 7 1.7919 -0.1943 -2.4519 15 6 2.2596 -0.8549 -3.5962 16 6 2.9873 -2.0555 -3.6160 17 6 3.2437 -2.3639 -4.9075 18 7 2.7087 -1.3942 -5.6789 19 6 2.7575 -1.3332 -7.1418 20 6 1.3572 -1.2171 -7.6867 21 1 0.5152 -1.1918 -7.0109 22 6 1.1510 -1.1443 -9.0480 23 7 2.1767 -1.1707 -9.8707 24 14 -0.5847 -1.0011 -9.7234 25 1 -1.1337 -2.3588 -9.9695 26 1 -1.4415 -0.2914 -8.7399 27 1 -0.5587 -0.2392 -10.9978 28 7 2.0930 -0.4598 -4.8365 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.2231 1.8105 1.4402 33 1 1.3971 3.1366 3.5065 34 1 3.2011 -0.1845 5.4908 35 1 3.0210 -1.5171 3.4290 36 1 1.2958 0.6347 -2.5392 37 1 3.2856 -2.6324 -2.7532 38 1 3.7829 -3.2312 -5.2591 39 1 3.2236 -2.2397 -7.5280 40 1 3.3404 -0.4653 -7.4500 41 1 3.0780 -1.2454 -9.5201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265617842.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:18 Heat of formation + Delta-G solvation = -25.168454 kcal Electronic energy + Delta-G solvation = -26750.813929 eV Core-core repulsion = 22547.119982 eV Total energy + Delta-G solvation = -4203.693947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.82380 -42.42268 -41.62535 -40.38361 -38.24770 -36.47779 -35.63197 -33.59956 -32.48772 -31.90087 -31.05420 -30.24655 -28.28578 -26.17534 -25.05302 -24.32709 -23.54342 -22.66198 -21.94535 -20.97592 -19.53892 -19.25270 -18.80801 -18.35516 -17.99882 -17.31414 -17.08382 -16.78628 -16.54503 -16.18478 -15.90468 -15.73656 -15.68362 -15.44288 -14.99852 -14.78542 -14.42720 -14.24159 -14.15273 -13.95909 -13.74316 -13.73516 -13.41390 -13.25933 -13.16799 -12.78086 -12.60287 -12.11809 -12.00685 -11.97203 -11.82266 -11.68020 -11.02043 -10.92066 -10.68986 -10.19544 -9.88509 -9.26432 -9.16667 -8.78107 -6.56046 0.13439 0.16858 0.78124 0.98753 1.29418 1.51425 1.58757 1.77838 1.85980 2.08128 2.43675 2.49908 2.54283 3.01310 3.24473 3.32186 3.59727 3.71858 3.77021 3.83034 3.85679 4.11014 4.13179 4.29001 4.45673 4.54310 4.61068 4.66747 4.68906 4.77317 4.79322 4.89690 5.03179 5.07938 5.12975 5.13924 5.19964 5.54133 5.65073 5.76707 5.90256 6.07613 6.25030 6.26989 6.40403 6.82948 6.96830 7.19646 8.58508 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.028861 B = 0.001900 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.927962 B =14735.425860 C =15246.862619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.081 3.919 3 H 0.138 0.862 4 O -0.304 6.304 5 C 0.108 3.892 6 C -0.180 4.180 7 C -0.109 4.109 8 C 0.041 3.959 9 F -0.150 7.150 10 C -0.111 4.111 11 C -0.131 4.131 12 C 0.523 3.477 13 O -0.532 6.532 14 N -0.615 5.615 15 C 0.268 3.732 16 C -0.293 4.293 17 C 0.057 3.943 18 N -0.342 5.342 19 C 0.258 3.742 20 C -0.620 4.620 21 H 0.046 0.954 22 C -0.020 4.020 23 N -0.924 5.924 24 Si 1.122 2.878 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.276 1.276 28 N -0.339 5.339 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.167 0.833 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.146 0.854 36 H 0.429 0.571 37 H 0.167 0.833 38 H 0.201 0.799 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.276 5.832 27.747 28.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 H 0.155 0.845 4 O -0.217 6.217 5 C 0.063 3.937 6 C -0.199 4.199 7 C -0.128 4.128 8 C 0.022 3.978 9 F -0.128 7.128 10 C -0.130 4.130 11 C -0.150 4.150 12 C 0.309 3.691 13 O -0.406 6.406 14 N -0.266 5.266 15 C 0.014 3.986 16 C -0.324 4.324 17 C -0.092 4.092 18 N -0.123 5.123 19 C 0.139 3.861 20 C -0.658 4.658 21 H 0.065 0.935 22 C -0.219 4.219 23 N -0.560 5.560 24 Si 0.943 3.057 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.202 1.202 28 N -0.170 5.170 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.184 0.816 33 H 0.178 0.822 34 H 0.176 0.824 35 H 0.164 0.836 36 H 0.268 0.732 37 H 0.184 0.816 38 H 0.218 0.782 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.117 5.928 25.594 26.456 hybrid contribution 1.380 -0.264 1.744 2.240 sum -1.737 5.664 27.338 27.973 Atomic orbital electron populations 1.22434 0.89966 1.04700 1.06259 1.22204 0.97260 0.97287 0.81140 0.84500 1.86198 1.81468 1.37922 1.16160 1.19277 0.96732 0.91189 0.86496 1.21426 1.04950 0.93007 1.00485 1.21211 0.98825 1.01879 0.90881 1.17867 1.05329 0.91095 0.83549 1.91479 1.94645 1.77213 1.49504 1.21149 1.00073 0.92362 0.99402 1.20483 1.02133 1.01990 0.90358 1.20838 0.79125 0.85235 0.83865 1.90669 1.39598 1.24204 1.86112 1.42314 1.55562 1.27183 1.01543 1.19367 0.98268 0.94081 0.86915 1.21729 1.12633 1.00647 0.97374 1.23172 0.99483 0.95617 0.90895 1.48586 1.40074 1.16619 1.07067 1.19449 0.98470 0.97578 0.70597 1.22297 0.92201 1.56471 0.94869 0.93522 1.27277 1.08999 0.92201 0.93456 1.70917 0.99814 1.47180 1.38064 0.82842 0.69406 0.77934 0.75496 1.19486 1.20324 1.20163 1.77275 1.23689 1.17228 0.98760 0.87947 0.91793 0.88039 0.81615 0.82231 0.82366 0.83605 0.73235 0.81559 0.78198 0.92849 0.96397 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 9.12 71.98 0.66 -1.27 16 2 C 0.08 1.27 2.64 29.85 0.08 1.35 16 3 H 0.14 1.23 6.31 -2.39 -0.02 1.21 16 4 O -0.30 -6.18 9.34 -73.96 -0.69 -6.87 16 5 C 0.11 1.76 6.60 22.49 0.15 1.91 16 6 C -0.18 -2.05 8.23 22.36 0.18 -1.86 16 7 C -0.11 -1.26 10.02 22.30 0.22 -1.04 16 8 C 0.04 0.60 7.30 22.37 0.16 0.76 16 9 F -0.15 -2.50 17.27 44.97 0.78 -1.73 16 10 C -0.11 -1.50 10.02 22.30 0.22 -1.28 16 11 C -0.13 -2.02 9.98 22.36 0.22 -1.80 16 12 C 0.52 13.37 7.15 87.65 0.63 13.99 16 13 O -0.53 -18.18 13.64 15.94 0.22 -17.96 16 14 N -0.61 -16.46 5.41 -307.51 -1.66 -18.13 16 15 C 0.27 10.17 8.11 133.32 1.08 11.25 16 16 C -0.29 -11.16 9.61 22.11 0.21 -10.94 16 17 C 0.06 2.18 11.43 83.52 0.95 3.13 16 18 N -0.34 -15.67 3.67 -351.85 -1.29 -16.96 16 19 C 0.26 13.03 5.57 85.64 0.48 13.51 16 20 C -0.62 -34.63 9.24 25.60 0.24 -34.39 16 21 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 22 C -0.02 -1.08 5.46 84.66 0.46 -0.62 16 23 N -0.92 -53.29 13.65 21.45 0.29 -52.99 16 24 Si 1.12 48.83 29.90 68.60 2.05 50.88 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 27 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 28 N -0.34 -15.18 12.42 -54.44 -0.68 -15.85 16 29 H 0.10 0.76 7.93 -2.39 -0.02 0.75 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 0.70 6.90 -2.38 -0.02 0.68 16 32 H 0.17 0.93 5.43 -2.91 -0.02 0.91 16 33 H 0.16 1.11 8.06 -2.92 -0.02 1.09 16 34 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 35 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.43 8.30 8.61 -92.71 -0.80 7.51 16 37 H 0.17 6.19 5.92 -2.91 -0.02 6.17 16 38 H 0.20 6.08 8.06 -2.91 -0.02 6.06 16 39 H 0.05 2.59 7.94 -2.39 -0.02 2.57 16 40 H 0.02 0.96 8.00 -2.39 -0.02 0.94 16 41 H 0.26 14.90 7.22 -92.71 -0.67 14.23 16 Total: -1.00 -75.21 359.53 5.36 -69.85 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.40 Total: 17.07 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 5.95 Total: -7.30 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -3.34 Total: -103.94 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.47 Total: -24.84 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.73 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 2.05 Total: 50.88 kcal Total: -75.21 5.36 -69.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265617842.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.679 kcal (2) G-P(sol) polarization free energy of solvation -75.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds