Wall clock time and date at job start Tue Mar 31 2020 18:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46946 * 2 1 4 4 O 1.42893 * 109.47026 * 240.00150 * 2 1 3 5 5 C 1.35938 * 117.00352 * 84.96172 * 4 2 1 6 6 C 1.38707 * 120.03285 * 174.28440 * 5 4 2 7 7 C 1.38146 * 119.97207 * 179.74837 * 6 5 4 8 8 C 1.38459 * 120.03024 * 0.52676 * 7 6 5 9 9 F 1.35098 * 119.97229 * 179.72309 * 8 7 6 10 10 C 1.38456 * 120.05512 * 359.75077 * 8 7 6 11 11 C 1.38146 * 120.03367 * 359.97178 * 10 8 7 12 12 C 1.50700 * 109.47083 * 119.99544 * 2 1 3 13 13 O 1.21293 * 119.99569 * 119.99936 * 12 2 1 14 14 N 1.34781 * 120.00189 * 300.00366 * 12 2 1 15 15 C 1.40158 * 119.99588 * 179.97438 * 14 12 2 16 16 C 1.40402 * 125.97678 * 0.02562 * 15 14 12 17 17 C 1.35237 * 107.86612 * 179.75987 * 16 15 14 18 18 N 1.34969 * 107.86602 * 0.38850 * 17 16 15 19 19 C 1.46491 * 125.97743 * 179.87676 * 18 17 16 20 20 C 1.50704 * 109.47364 * 124.71661 * 19 18 17 21 21 H 1.07998 * 119.99317 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00187 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00075 * 359.71780 * 22 20 19 24 24 Si 1.86799 * 119.99892 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47293 * 179.72324 * 24 22 20 26 26 H 1.48492 * 109.47353 * 299.72315 * 24 22 20 27 27 H 1.48498 * 109.47333 * 59.72585 * 24 22 20 28 28 N 1.31222 * 125.96814 * 180.02562 * 15 14 12 29 29 H 1.09009 * 109.47021 * 300.00143 * 1 2 3 30 30 H 1.08998 * 109.47054 * 59.99944 * 1 2 3 31 31 H 1.08998 * 109.47036 * 180.02562 * 1 2 3 32 32 H 1.08002 * 120.01110 * 0.02562 * 6 5 4 33 33 H 1.08003 * 119.98839 * 180.25527 * 7 6 5 34 34 H 1.08006 * 119.98029 * 179.97438 * 10 8 7 35 35 H 1.08004 * 120.01504 * 179.97438 * 11 10 8 36 36 H 0.96991 * 119.99782 * 359.97438 * 14 12 2 37 37 H 1.07998 * 126.06783 * 0.02562 * 16 15 14 38 38 H 1.08008 * 126.07018 * 180.23910 * 17 16 15 39 39 H 1.08999 * 109.47748 * 4.71071 * 19 18 17 40 40 H 1.09008 * 109.46710 * 244.71045 * 19 18 17 41 41 H 0.96996 * 119.99980 * 0.28117 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1118 0.0626 -2.3046 6 6 2.6777 -0.4944 -3.4419 7 6 2.7795 0.2532 -4.5991 8 6 2.3269 1.5615 -4.6209 9 9 2.4321 2.2934 -5.7516 10 6 1.7670 2.1206 -3.4847 11 6 1.6588 1.3734 -2.3278 12 6 2.0324 -0.7103 1.2305 13 8 2.7297 -1.6965 1.1192 14 7 1.7067 -0.2498 2.4546 15 6 2.1735 -0.9108 3.5990 16 6 2.9841 -2.0571 3.6164 17 6 3.2183 -2.3801 4.9086 18 7 2.5755 -1.4809 5.6832 19 6 2.5613 -1.4611 7.1479 20 6 3.0359 -0.1169 7.6368 21 1 3.3202 0.6461 6.9272 22 6 3.1073 0.1388 8.9897 23 7 2.7559 -0.7885 9.8536 24 14 3.6963 1.8047 9.5956 25 1 3.6749 1.8275 11.0803 26 1 5.0814 2.0442 9.1169 27 1 2.8009 2.8671 9.0714 28 7 1.9294 -0.5665 4.8415 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.0346 -1.5136 -3.4240 33 1 3.2164 -0.1816 -5.4860 34 1 1.4147 3.1414 -3.5030 35 1 1.2223 1.8100 -1.4416 36 1 1.1494 0.5390 2.5436 37 1 3.3580 -2.5846 2.7514 38 1 3.8123 -3.2115 5.2587 39 1 3.2220 -2.2401 7.5283 40 1 1.5465 -1.6395 7.5038 41 1 2.4504 -1.6537 9.5390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265617846.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:23 Heat of formation + Delta-G solvation = -4.786629 kcal Electronic energy + Delta-G solvation = -26757.930431 eV Core-core repulsion = 22555.120307 eV Total energy + Delta-G solvation = -4202.810124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.18347 -41.19388 -40.58420 -39.31550 -37.53345 -35.02738 -33.83889 -32.66914 -31.52666 -30.70678 -29.65446 -29.45215 -26.52157 -25.21286 -23.84589 -23.18817 -22.64209 -21.49132 -20.53039 -19.68986 -18.88156 -17.86509 -17.63926 -17.24462 -16.65618 -16.42887 -16.18770 -15.86064 -15.43988 -15.14494 -15.05541 -14.59145 -14.19749 -14.06754 -13.82310 -13.77573 -13.58143 -13.32311 -13.13975 -12.80456 -12.68146 -12.54113 -12.31755 -12.12042 -11.86435 -11.40004 -11.24569 -11.21184 -10.86288 -10.57486 -10.19645 -10.14642 -9.73113 -9.64026 -9.06218 -8.62561 -8.53377 -8.31015 -7.63104 -6.62475 -4.36893 0.68901 0.77076 2.02303 2.10541 2.73256 2.99314 3.12273 3.34799 3.36056 3.52090 3.54848 3.64418 3.89355 4.12214 4.24548 4.31047 4.34852 4.37492 4.45102 4.65850 4.82842 4.96390 5.10789 5.12390 5.19529 5.36873 5.41636 5.58551 5.61489 5.66401 5.71258 5.76458 6.04432 6.21485 6.31736 6.39977 6.51780 6.68641 6.86106 7.18401 7.36039 7.62750 7.75414 7.99984 8.28612 8.44473 8.56286 9.31302 10.75135 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022714 B = 0.001959 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.417848 B =14291.696988 C =14965.528248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.072 3.928 3 H 0.105 0.895 4 O -0.279 6.279 5 C 0.125 3.875 6 C -0.119 4.119 7 C -0.112 4.112 8 C 0.057 3.943 9 F -0.142 7.142 10 C -0.111 4.111 11 C -0.185 4.185 12 C 0.523 3.477 13 O -0.492 6.492 14 N -0.625 5.625 15 C 0.258 3.742 16 C -0.285 4.285 17 C 0.053 3.947 18 N -0.315 5.315 19 C 0.249 3.751 20 C -0.609 4.609 21 H 0.063 0.937 22 C 0.023 3.977 23 N -0.904 5.904 24 Si 1.077 2.923 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.285 1.285 28 N -0.299 5.299 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.412 0.588 37 H 0.161 0.839 38 H 0.169 0.831 39 H 0.047 0.953 40 H 0.035 0.965 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.857 3.051 -26.395 26.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.012 3.988 3 H 0.123 0.877 4 O -0.191 6.191 5 C 0.079 3.921 6 C -0.138 4.138 7 C -0.130 4.130 8 C 0.037 3.963 9 F -0.121 7.121 10 C -0.130 4.130 11 C -0.204 4.204 12 C 0.307 3.693 13 O -0.363 6.363 14 N -0.274 5.274 15 C 0.005 3.995 16 C -0.316 4.316 17 C -0.097 4.097 18 N -0.097 5.097 19 C 0.131 3.869 20 C -0.647 4.647 21 H 0.082 0.918 22 C -0.182 4.182 23 N -0.539 5.539 24 Si 0.904 3.096 25 H -0.205 1.205 26 H -0.212 1.212 27 H -0.211 1.211 28 N -0.130 5.130 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.247 0.753 37 H 0.179 0.821 38 H 0.186 0.814 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.599 3.848 -24.227 24.793 hybrid contribution -0.237 -0.709 -1.935 2.075 sum -3.837 3.139 -26.162 26.628 Atomic orbital electron populations 1.22406 0.92075 1.05029 1.04246 1.22127 0.95974 0.97008 0.83675 0.87744 1.86228 1.80879 1.36550 1.15460 1.19070 0.95667 0.90352 0.86983 1.20333 1.01704 1.01637 0.90094 1.20986 1.00477 0.92524 0.99060 1.17600 1.04627 0.90679 0.83348 1.91496 1.94476 1.76981 1.49111 1.20946 0.99611 1.00924 0.91485 1.21201 1.05648 0.93896 0.99635 1.19921 0.81060 0.85164 0.83175 1.90698 1.35300 1.24650 1.85628 1.42208 1.51879 1.30804 1.02497 1.19017 0.99423 0.94673 0.86382 1.21536 1.10742 1.02046 0.97281 1.22582 0.99343 0.96775 0.91014 1.48810 1.35235 1.18062 1.07580 1.19790 0.98238 1.00049 0.68873 1.22088 1.49215 0.98496 0.94897 0.91844 1.25932 0.94635 1.05063 0.92564 1.70855 1.40420 1.05585 1.37017 0.83415 0.76368 0.73618 0.76226 1.20498 1.21224 1.21137 1.77355 1.22421 1.15526 0.97651 0.89785 0.90281 0.90166 0.83781 0.83928 0.84322 0.84107 0.75251 0.82115 0.81357 0.93528 0.94685 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 9.07 37.16 0.34 -0.85 16 2 C 0.07 0.66 2.64 -27.88 -0.07 0.59 16 3 H 0.11 0.69 6.31 -51.92 -0.33 0.36 16 4 O -0.28 -3.04 9.33 -39.45 -0.37 -3.41 16 5 C 0.13 1.14 6.60 -39.23 -0.26 0.88 16 6 C -0.12 -0.98 9.98 -39.44 -0.39 -1.38 16 7 C -0.11 -0.83 10.02 -39.53 -0.40 -1.23 16 8 C 0.06 0.47 7.30 -39.42 -0.29 0.18 16 9 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16 10 C -0.11 -0.80 10.02 -39.53 -0.40 -1.19 16 11 C -0.19 -1.34 8.24 -39.44 -0.33 -1.67 16 12 C 0.52 7.04 7.20 -10.98 -0.08 6.96 16 13 O -0.49 -8.50 13.63 -14.36 -0.20 -8.70 16 14 N -0.62 -8.80 5.34 -11.13 -0.06 -8.86 16 15 C 0.26 4.95 8.11 -154.39 -1.25 3.70 16 16 C -0.28 -5.49 9.60 -39.84 -0.38 -5.87 16 17 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 18 N -0.32 -7.17 3.67 -62.56 -0.23 -7.40 16 19 C 0.25 6.16 5.57 -5.20 -0.03 6.13 16 20 C -0.61 -16.81 9.24 -34.44 -0.32 -17.12 16 21 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 22 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 23 N -0.90 -25.93 13.65 55.43 0.76 -25.18 16 24 Si 1.08 24.51 29.90 -169.99 -5.08 19.42 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 26 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 28 N -0.30 -6.66 12.42 31.44 0.39 -6.26 16 29 H 0.08 0.42 7.57 -51.92 -0.39 0.03 16 30 H 0.08 0.40 6.91 -51.93 -0.36 0.04 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 34 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 35 H 0.14 0.72 5.43 -52.48 -0.28 0.43 16 36 H 0.41 4.41 8.24 -40.82 -0.34 4.08 16 37 H 0.16 3.02 5.92 -52.49 -0.31 2.71 16 38 H 0.17 2.66 8.06 -52.48 -0.42 2.24 16 39 H 0.05 1.12 7.94 -51.93 -0.41 0.70 16 40 H 0.04 0.90 8.00 -51.92 -0.42 0.49 16 41 H 0.27 7.49 7.22 -40.82 -0.29 7.20 16 LS Contribution 358.75 15.07 5.41 5.41 Total: -1.00 -34.27 358.75 -7.95 -42.22 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -4.45 Total: 3.53 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -4.15 Total: -9.52 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.86 Total: -47.70 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.56 Total: -12.10 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.08 Total: 19.42 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.27 -7.95 -42.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265617846.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.434 kcal (2) G-P(sol) polarization free energy of solvation -34.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds