Wall clock time and date at job start Tue Mar 31 2020 18:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46946 * 2 1 4 4 O 1.42893 * 109.47026 * 240.00150 * 2 1 3 5 5 C 1.35938 * 117.00352 * 84.96172 * 4 2 1 6 6 C 1.38707 * 120.03285 * 174.28440 * 5 4 2 7 7 C 1.38146 * 119.97207 * 179.74837 * 6 5 4 8 8 C 1.38459 * 120.03024 * 0.52676 * 7 6 5 9 9 F 1.35098 * 119.97229 * 179.72309 * 8 7 6 10 10 C 1.38456 * 120.05512 * 359.75077 * 8 7 6 11 11 C 1.38146 * 120.03367 * 359.97178 * 10 8 7 12 12 C 1.50700 * 109.47083 * 119.99544 * 2 1 3 13 13 O 1.21293 * 119.99569 * 119.99936 * 12 2 1 14 14 N 1.34781 * 120.00189 * 300.00366 * 12 2 1 15 15 C 1.40158 * 119.99588 * 179.97438 * 14 12 2 16 16 C 1.40402 * 125.97678 * 0.02562 * 15 14 12 17 17 C 1.35237 * 107.86612 * 179.75987 * 16 15 14 18 18 N 1.34969 * 107.86602 * 0.38850 * 17 16 15 19 19 C 1.46491 * 125.97743 * 179.87676 * 18 17 16 20 20 C 1.50704 * 109.47364 * 124.71661 * 19 18 17 21 21 H 1.07998 * 119.99317 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00187 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00075 * 359.71780 * 22 20 19 24 24 Si 1.86799 * 119.99892 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47293 * 179.72324 * 24 22 20 26 26 H 1.48492 * 109.47353 * 299.72315 * 24 22 20 27 27 H 1.48498 * 109.47333 * 59.72585 * 24 22 20 28 28 N 1.31222 * 125.96814 * 180.02562 * 15 14 12 29 29 H 1.09009 * 109.47021 * 300.00143 * 1 2 3 30 30 H 1.08998 * 109.47054 * 59.99944 * 1 2 3 31 31 H 1.08998 * 109.47036 * 180.02562 * 1 2 3 32 32 H 1.08002 * 120.01110 * 0.02562 * 6 5 4 33 33 H 1.08003 * 119.98839 * 180.25527 * 7 6 5 34 34 H 1.08006 * 119.98029 * 179.97438 * 10 8 7 35 35 H 1.08004 * 120.01504 * 179.97438 * 11 10 8 36 36 H 0.96991 * 119.99782 * 359.97438 * 14 12 2 37 37 H 1.07998 * 126.06783 * 0.02562 * 16 15 14 38 38 H 1.08008 * 126.07018 * 180.23910 * 17 16 15 39 39 H 1.08999 * 109.47748 * 4.71071 * 19 18 17 40 40 H 1.09008 * 109.46710 * 244.71045 * 19 18 17 41 41 H 0.96996 * 119.99980 * 0.28117 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1118 0.0626 -2.3046 6 6 2.6777 -0.4944 -3.4419 7 6 2.7795 0.2532 -4.5991 8 6 2.3269 1.5615 -4.6209 9 9 2.4321 2.2934 -5.7516 10 6 1.7670 2.1206 -3.4847 11 6 1.6588 1.3734 -2.3278 12 6 2.0324 -0.7103 1.2305 13 8 2.7297 -1.6965 1.1192 14 7 1.7067 -0.2498 2.4546 15 6 2.1735 -0.9108 3.5990 16 6 2.9841 -2.0571 3.6164 17 6 3.2183 -2.3801 4.9086 18 7 2.5755 -1.4809 5.6832 19 6 2.5613 -1.4611 7.1479 20 6 3.0359 -0.1169 7.6368 21 1 3.3202 0.6461 6.9272 22 6 3.1073 0.1388 8.9897 23 7 2.7559 -0.7885 9.8536 24 14 3.6963 1.8047 9.5956 25 1 3.6749 1.8275 11.0803 26 1 5.0814 2.0442 9.1169 27 1 2.8009 2.8671 9.0714 28 7 1.9294 -0.5665 4.8415 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.0346 -1.5136 -3.4240 33 1 3.2164 -0.1816 -5.4860 34 1 1.4147 3.1414 -3.5030 35 1 1.2223 1.8100 -1.4416 36 1 1.1494 0.5390 2.5436 37 1 3.3580 -2.5846 2.7514 38 1 3.8123 -3.2115 5.2587 39 1 3.2220 -2.2401 7.5283 40 1 1.5465 -1.6395 7.5038 41 1 2.4504 -1.6537 9.5390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265617846.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:22 Heat of formation + Delta-G solvation = -24.966097 kcal Electronic energy + Delta-G solvation = -26758.805479 eV Core-core repulsion = 22555.120307 eV Total energy + Delta-G solvation = -4203.685172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.82513 -42.42354 -41.62491 -40.38245 -38.24662 -36.48080 -35.63853 -33.60682 -32.48034 -31.89430 -31.05242 -30.24362 -28.27745 -26.16650 -25.05988 -24.32637 -23.54276 -22.66293 -21.95686 -20.96034 -19.54330 -19.25665 -18.81439 -18.35549 -18.00434 -17.31749 -16.98955 -16.86748 -16.57548 -16.22068 -15.79360 -15.73550 -15.63056 -15.50753 -15.02186 -14.80656 -14.43084 -14.18448 -14.14628 -13.98797 -13.78519 -13.70911 -13.42487 -13.23246 -13.17696 -12.77435 -12.61209 -12.10311 -12.01608 -11.95490 -11.82433 -11.67637 -11.02235 -10.91967 -10.69351 -10.19559 -9.88422 -9.26378 -9.16628 -8.78002 -6.55990 0.13365 0.16876 0.77737 0.99848 1.29078 1.51932 1.57961 1.78791 1.86072 2.08366 2.43525 2.50137 2.54362 3.01271 3.24497 3.32163 3.59917 3.71886 3.76630 3.83041 3.86141 4.11051 4.13149 4.28970 4.45469 4.54337 4.61821 4.66751 4.69188 4.77409 4.79337 4.89642 5.03265 5.07938 5.13101 5.13942 5.19923 5.54228 5.65102 5.76723 5.90002 6.07763 6.24835 6.26901 6.40344 6.82977 6.96879 7.19659 8.58569 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022714 B = 0.001959 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.417848 B =14291.696988 C =14965.528248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 H 0.137 0.863 4 O -0.304 6.304 5 C 0.108 3.892 6 C -0.131 4.131 7 C -0.111 4.111 8 C 0.041 3.959 9 F -0.149 7.149 10 C -0.110 4.110 11 C -0.180 4.180 12 C 0.523 3.477 13 O -0.533 6.533 14 N -0.614 5.614 15 C 0.268 3.732 16 C -0.293 4.293 17 C 0.056 3.944 18 N -0.342 5.342 19 C 0.259 3.741 20 C -0.621 4.621 21 H 0.047 0.953 22 C -0.020 4.020 23 N -0.923 5.923 24 Si 1.120 2.880 25 H -0.277 1.277 26 H -0.272 1.272 27 H -0.273 1.273 28 N -0.339 5.339 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.146 0.854 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.429 0.571 37 H 0.167 0.833 38 H 0.201 0.799 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.099 4.673 -27.720 28.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.020 3.980 3 H 0.154 0.846 4 O -0.217 6.217 5 C 0.063 3.937 6 C -0.150 4.150 7 C -0.130 4.130 8 C 0.022 3.978 9 F -0.128 7.128 10 C -0.128 4.128 11 C -0.199 4.199 12 C 0.309 3.691 13 O -0.406 6.406 14 N -0.266 5.266 15 C 0.014 3.986 16 C -0.324 4.324 17 C -0.092 4.092 18 N -0.123 5.123 19 C 0.139 3.861 20 C -0.659 4.659 21 H 0.065 0.935 22 C -0.219 4.219 23 N -0.559 5.559 24 Si 0.941 3.059 25 H -0.201 1.201 26 H -0.197 1.197 27 H -0.199 1.199 28 N -0.169 5.169 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.164 0.836 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.184 0.816 36 H 0.268 0.732 37 H 0.184 0.816 38 H 0.218 0.782 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.865 5.476 -25.598 26.461 hybrid contribution -0.161 -1.274 -1.704 2.133 sum -4.026 4.202 -27.301 27.915 Atomic orbital electron populations 1.22445 0.89846 1.04781 1.06275 1.22216 0.97344 0.97253 0.81143 0.84594 1.86187 1.81524 1.37775 1.16236 1.19272 0.96677 0.91196 0.86536 1.20484 1.02046 1.02033 0.90391 1.21153 1.00087 0.92360 0.99391 1.17867 1.05341 0.91043 0.83587 1.91478 1.94610 1.77156 1.49592 1.21212 0.98816 1.01863 0.90932 1.21428 1.04945 0.92997 1.00509 1.20848 0.79777 0.84584 0.83871 1.90671 1.37128 1.26640 1.86186 1.42317 1.51842 1.31066 1.01357 1.19362 0.98004 0.94343 0.86916 1.21727 1.10976 1.02350 0.97334 1.23174 0.98453 0.96685 0.90862 1.48585 1.37193 1.19591 1.06974 1.19446 0.97114 0.98971 0.70546 1.22274 1.49291 0.99391 0.94918 0.93513 1.27279 0.94086 1.07636 0.92943 1.70949 1.41751 1.05856 1.37354 0.82877 0.76867 0.70218 0.75980 1.20147 1.19700 1.19880 1.77272 1.24131 1.16770 0.98759 0.87871 0.88102 0.91613 0.83590 0.82357 0.82243 0.81636 0.73239 0.81566 0.78209 0.92861 0.96389 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 9.07 71.98 0.65 -1.16 16 2 C 0.08 1.26 2.64 29.85 0.08 1.34 16 3 H 0.14 1.29 6.31 -2.38 -0.02 1.27 16 4 O -0.30 -6.18 9.33 -73.81 -0.69 -6.87 16 5 C 0.11 1.78 6.60 22.49 0.15 1.93 16 6 C -0.13 -2.03 9.98 22.36 0.22 -1.81 16 7 C -0.11 -1.52 10.02 22.30 0.22 -1.30 16 8 C 0.04 0.61 7.30 22.37 0.16 0.77 16 9 F -0.15 -2.53 17.27 44.97 0.78 -1.75 16 10 C -0.11 -1.29 10.02 22.30 0.22 -1.07 16 11 C -0.18 -2.09 8.24 22.36 0.18 -1.90 16 12 C 0.52 13.35 7.20 87.66 0.63 13.98 16 13 O -0.53 -18.19 13.63 15.97 0.22 -17.97 16 14 N -0.61 -16.43 5.34 -307.51 -1.64 -18.08 16 15 C 0.27 10.16 8.11 133.32 1.08 11.24 16 16 C -0.29 -11.16 9.60 22.10 0.21 -10.94 16 17 C 0.06 2.18 11.43 83.52 0.96 3.13 16 18 N -0.34 -15.66 3.67 -351.84 -1.29 -16.95 16 19 C 0.26 13.04 5.57 85.64 0.48 13.52 16 20 C -0.62 -34.64 9.24 25.60 0.24 -34.40 16 21 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 22 C -0.02 -1.09 5.46 84.65 0.46 -0.62 16 23 N -0.92 -53.29 13.65 21.45 0.29 -53.00 16 24 Si 1.12 48.76 29.90 68.60 2.05 50.81 16 25 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 N -0.34 -15.14 12.42 -54.45 -0.68 -15.82 16 29 H 0.10 0.67 7.57 -2.38 -0.02 0.65 16 30 H 0.10 0.64 6.91 -2.39 -0.02 0.63 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 34 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 35 H 0.17 0.97 5.43 -2.91 -0.02 0.95 16 36 H 0.43 8.29 8.24 -92.72 -0.76 7.53 16 37 H 0.17 6.19 5.92 -2.91 -0.02 6.17 16 38 H 0.20 6.08 8.06 -2.91 -0.02 6.06 16 39 H 0.05 2.58 7.94 -2.39 -0.02 2.57 16 40 H 0.02 0.96 8.00 -2.38 -0.02 0.95 16 41 H 0.26 14.89 7.22 -92.71 -0.67 14.22 16 Total: -1.00 -75.22 358.75 5.42 -69.80 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.43 Total: 17.12 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 5.95 Total: -7.30 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -3.32 Total: -103.85 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.47 Total: -24.84 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.78 Total: -1.75 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.05 Total: 50.81 kcal Total: -75.22 5.42 -69.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265617846.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.835 kcal (2) G-P(sol) polarization free energy of solvation -75.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds