Wall clock time and date at job start Tue Mar 31 2020 18:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47438 * 2 1 4 4 C 1.50697 * 109.46959 * 119.99989 * 2 1 3 5 5 H 1.08009 * 120.00252 * 120.00097 * 4 2 1 6 6 C 1.37881 * 120.00080 * 299.99876 * 4 2 1 7 7 N 1.31510 * 119.99738 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99942 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47105 * 90.00317 * 8 6 4 10 10 H 1.48493 * 109.47230 * 210.00105 * 8 6 4 11 11 H 1.48504 * 109.47383 * 330.00424 * 8 6 4 12 12 N 1.46504 * 109.47272 * 239.99848 * 2 1 3 13 13 C 1.46497 * 120.00018 * 299.99981 * 12 2 1 14 14 C 1.34782 * 119.99608 * 119.99964 * 12 2 1 15 15 O 1.21599 * 120.00103 * 4.08241 * 14 12 2 16 16 C 1.47460 * 119.99736 * 184.08122 * 14 12 2 17 17 N 1.32019 * 126.44565 * 4.34541 * 16 14 12 18 18 N 1.28464 * 110.21417 * 179.85257 * 17 16 14 19 19 C 1.40138 * 124.93432 * 180.12820 * 18 17 16 20 20 C 1.38824 * 120.08214 * 180.02562 * 19 18 17 21 21 C 1.38115 * 119.95650 * 179.70246 * 20 19 18 22 22 C 1.38308 * 120.11655 * 0.57545 * 21 20 19 23 23 C 1.38244 * 120.15693 * 359.72110 * 22 21 20 24 24 C 1.38332 * 120.04497 * 359.97438 * 23 22 21 25 25 F 1.35100 * 120.05963 * 180.02562 * 24 23 22 26 26 C 1.36097 * 110.12956 * 0.41771 * 18 17 16 27 27 C 1.35766 * 107.06967 * 359.74911 * 26 18 17 28 28 O 1.36077 * 127.26351 * 179.97438 * 27 26 18 29 29 H 1.09000 * 109.46773 * 60.00507 * 1 2 3 30 30 H 1.08999 * 109.46629 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47144 * 299.99860 * 1 2 3 32 32 H 0.97002 * 119.99609 * 179.97438 * 7 6 4 33 33 H 1.08991 * 109.47054 * 264.20942 * 13 12 2 34 34 H 1.08998 * 109.46642 * 144.21304 * 13 12 2 35 35 H 1.09000 * 109.47121 * 24.21594 * 13 12 2 36 36 H 1.08001 * 120.02352 * 359.97438 * 20 19 18 37 37 H 1.08006 * 119.94322 * 180.27826 * 21 20 19 38 38 H 1.07996 * 119.91974 * 179.74523 * 22 21 20 39 39 H 1.08003 * 119.97528 * 180.02562 * 23 22 21 40 40 H 1.08009 * 126.46529 * 179.74990 * 26 18 17 41 41 H 0.96694 * 113.99645 * 270.04095 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3213 -1.1204 4.0080 9 1 3.6296 -0.5459 4.4124 10 1 1.3431 -0.9493 5.1120 11 1 2.4858 -2.5663 3.7120 12 7 2.0184 -0.6907 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7933 -0.0356 -2.0833 15 8 3.1483 1.1048 -1.8549 16 6 3.2105 -0.7018 -3.3309 17 7 2.8365 -1.8987 -3.7438 18 7 3.3846 -2.1698 -4.8736 19 6 3.1977 -3.3588 -5.5914 20 6 3.8423 -3.5467 -6.8065 21 6 3.6610 -4.7221 -7.5088 22 6 2.8290 -5.7076 -7.0095 23 6 2.1799 -5.5230 -5.8030 24 6 2.3616 -4.3510 -5.0910 25 9 1.7278 -4.1704 -3.9116 26 6 4.1780 -1.1372 -5.2691 27 6 4.0937 -0.1799 -4.3101 28 8 4.7240 1.0260 -4.2920 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.7081 1.1608 3.4844 33 1 2.4659 -2.7353 -1.0625 34 1 1.5233 -2.2605 -2.4957 35 1 0.7411 -2.3273 -0.8982 36 1 4.4885 -2.7762 -7.2002 37 1 4.1662 -4.8699 -8.4519 38 1 2.6864 -6.6237 -7.5633 39 1 1.5312 -6.2947 -5.4156 40 1 4.7643 -1.0885 -6.1749 41 1 5.5907 1.0102 -3.8636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268421835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:42 Heat of formation + Delta-G solvation = 19.557056 kcal Electronic energy + Delta-G solvation = -28711.632248 eV Core-core repulsion = 24509.877745 eV Total energy + Delta-G solvation = -4201.754503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.05360 -42.91984 -39.48729 -38.59045 -37.17155 -35.17413 -33.77901 -32.65657 -31.31387 -30.35755 -29.56237 -28.77747 -25.98799 -25.16256 -24.60039 -23.74395 -22.23218 -21.30966 -20.64308 -19.15866 -18.38916 -17.74314 -17.24082 -16.61532 -16.55481 -16.22800 -16.08133 -15.55961 -15.33545 -15.15156 -14.75627 -14.28466 -14.21271 -14.14446 -13.96777 -13.50485 -12.91772 -12.75261 -12.58707 -12.52410 -12.31115 -12.04338 -11.67906 -11.47297 -10.99273 -10.85679 -10.74398 -10.67919 -10.31857 -10.17074 -10.11708 -10.01709 -9.39621 -9.17403 -9.14603 -9.02633 -8.37942 -8.36056 -7.45110 -6.00044 -4.07303 0.25181 0.61651 1.85291 1.96999 2.06854 3.09267 3.32346 3.38203 3.41082 3.65220 3.78650 3.97917 4.05966 4.25877 4.37334 4.47599 4.56283 4.61741 4.69019 4.94115 5.00527 5.24120 5.31103 5.42365 5.49652 5.59649 5.61400 5.80471 6.00501 6.15312 6.22697 6.42482 6.59107 6.76726 6.88322 6.96521 7.14234 7.53550 7.58729 7.71089 7.79046 7.80481 8.09543 8.27049 8.60673 8.90156 9.10576 9.58530 11.05390 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015498 B = 0.003447 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.297914 B = 8121.033740 C = 9276.604803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.574 5.574 13 C 0.076 3.924 14 C 0.581 3.419 15 O -0.534 6.534 16 C 0.001 3.999 17 N -0.236 5.236 18 N -0.242 5.242 19 C 0.111 3.889 20 C -0.104 4.104 21 C -0.108 4.108 22 C -0.095 4.095 23 C -0.135 4.135 24 C 0.112 3.888 25 F -0.108 7.108 26 C -0.048 4.048 27 C 0.057 3.943 28 O -0.450 6.450 29 H 0.012 0.988 30 H 0.031 0.969 31 H 0.095 0.905 32 H 0.263 0.737 33 H 0.042 0.958 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.148 0.852 40 H 0.188 0.812 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.841 -13.948 -22.833 27.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.304 5.304 13 C -0.068 4.068 14 C 0.364 3.636 15 O -0.410 6.410 16 C -0.162 4.162 17 N -0.069 5.069 18 N -0.024 5.024 19 C 0.019 3.981 20 C -0.125 4.125 21 C -0.127 4.127 22 C -0.113 4.113 23 C -0.155 4.155 24 C 0.091 3.909 25 F -0.086 7.086 26 C -0.187 4.187 27 C 0.002 3.998 28 O -0.256 6.256 29 H 0.031 0.969 30 H 0.050 0.950 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.205 0.795 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.742 -13.910 -22.494 26.869 hybrid contribution 1.131 -0.011 1.104 1.581 sum 5.873 -13.921 -21.389 26.187 Atomic orbital electron populations 1.22103 0.98034 0.99521 1.00890 1.19015 0.90965 0.94498 0.79762 0.91772 1.21322 1.31651 1.12896 0.90206 0.92266 1.24886 0.94996 0.95020 0.98897 1.69884 1.36439 1.22720 1.23668 0.86488 0.78604 0.79900 0.82350 1.20632 1.21140 1.19942 1.48157 1.47478 1.12126 1.22646 1.22023 1.00495 0.81888 1.02363 1.16843 0.80066 0.85429 0.81235 1.90780 1.56358 1.17342 1.76508 1.23221 1.02151 0.91773 0.99042 1.74224 1.18841 1.16262 0.97547 1.42372 1.33164 1.11947 1.14937 1.17740 1.01761 0.84761 0.93887 1.20814 1.00086 0.99508 0.92067 1.21052 0.98827 0.92482 1.00337 1.21155 0.95618 0.99678 0.94868 1.21197 1.02170 0.96223 0.95872 1.17390 0.94987 0.94237 0.84292 1.91643 1.79036 1.95180 1.42718 1.22810 1.02718 0.89269 1.03899 1.18090 0.99865 0.87991 0.93881 1.84890 1.36176 1.23992 1.80532 0.96904 0.94988 0.88667 0.92736 0.93971 0.89332 0.91223 0.83933 0.84126 0.84232 0.83465 0.79499 0.75536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 8.96 37.16 0.33 -3.41 16 2 C 0.26 7.02 2.63 -69.08 -0.18 6.84 16 3 H 0.06 1.99 6.90 -51.93 -0.36 1.63 16 4 C -0.52 -14.87 8.37 -34.44 -0.29 -15.15 16 5 H 0.06 1.68 7.65 -52.48 -0.40 1.28 16 6 C 0.06 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -25.90 11.32 55.43 0.63 -25.27 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.57 -13.87 2.75 -176.52 -0.49 -14.35 16 13 C 0.08 1.58 9.03 59.85 0.54 2.12 16 14 C 0.58 13.84 7.67 -12.50 -0.10 13.74 16 15 O -0.53 -14.28 15.87 3.28 0.05 -14.23 16 16 C 0.00 0.02 6.86 -82.66 -0.57 -0.54 16 17 N -0.24 -4.12 6.69 33.46 0.22 -3.90 16 18 N -0.24 -3.37 3.52 -10.35 -0.04 -3.40 16 19 C 0.11 1.22 6.67 -83.54 -0.56 0.66 16 20 C -0.10 -0.73 9.43 -39.41 -0.37 -1.10 16 21 C -0.11 -0.53 10.04 -39.60 -0.40 -0.93 16 22 C -0.09 -0.48 10.04 -39.55 -0.40 -0.88 16 23 C -0.14 -1.00 10.02 -39.54 -0.40 -1.40 16 24 C 0.11 1.25 7.27 -39.24 -0.29 0.96 16 25 F -0.11 -1.51 14.58 2.25 0.03 -1.48 16 26 C -0.05 -0.59 10.81 -16.54 -0.18 -0.77 16 27 C 0.06 0.92 7.35 -39.10 -0.29 0.64 16 28 O -0.45 -6.95 13.21 -21.99 -0.29 -7.24 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.03 0.75 6.67 -51.93 -0.35 0.41 16 31 H 0.09 2.60 6.07 -51.93 -0.32 2.29 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.71 4.02 -51.93 -0.21 1.50 16 35 H 0.07 1.43 6.44 -51.93 -0.33 1.09 16 36 H 0.14 0.66 6.65 -52.49 -0.35 0.32 16 37 H 0.14 0.28 8.06 -52.48 -0.42 -0.14 16 38 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 39 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.19 1.42 6.96 -52.48 -0.37 1.05 16 41 H 0.39 4.25 9.06 45.56 0.41 4.66 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -36.31 348.44 -6.39 -42.70 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -3.51 Total: 2.67 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -3.23 Total: 2.50 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.33 Total: -46.92 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.24 Total: -21.47 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.03 Total: -1.48 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.31 -6.39 -42.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268421835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.255 kcal (2) G-P(sol) polarization free energy of solvation -36.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds