Wall clock time and date at job start Tue Mar 31 2020 18:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47438 * 2 1 4 4 C 1.50697 * 109.46959 * 119.99989 * 2 1 3 5 5 H 1.08009 * 120.00252 * 120.00097 * 4 2 1 6 6 C 1.37881 * 120.00080 * 299.99876 * 4 2 1 7 7 N 1.31510 * 119.99738 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99942 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47105 * 90.00317 * 8 6 4 10 10 H 1.48493 * 109.47230 * 210.00105 * 8 6 4 11 11 H 1.48504 * 109.47383 * 330.00424 * 8 6 4 12 12 N 1.46504 * 109.47272 * 239.99848 * 2 1 3 13 13 C 1.46497 * 120.00018 * 299.99981 * 12 2 1 14 14 C 1.34782 * 119.99608 * 119.99964 * 12 2 1 15 15 O 1.21599 * 120.00103 * 4.08241 * 14 12 2 16 16 C 1.47460 * 119.99736 * 184.08122 * 14 12 2 17 17 N 1.32019 * 126.44565 * 4.34541 * 16 14 12 18 18 N 1.28464 * 110.21417 * 179.85257 * 17 16 14 19 19 C 1.40138 * 124.93432 * 180.12820 * 18 17 16 20 20 C 1.38824 * 120.08214 * 180.02562 * 19 18 17 21 21 C 1.38115 * 119.95650 * 179.70246 * 20 19 18 22 22 C 1.38308 * 120.11655 * 0.57545 * 21 20 19 23 23 C 1.38244 * 120.15693 * 359.72110 * 22 21 20 24 24 C 1.38332 * 120.04497 * 359.97438 * 23 22 21 25 25 F 1.35100 * 120.05963 * 180.02562 * 24 23 22 26 26 C 1.36097 * 110.12956 * 0.41771 * 18 17 16 27 27 C 1.35766 * 107.06967 * 359.74911 * 26 18 17 28 28 O 1.36077 * 127.26351 * 179.97438 * 27 26 18 29 29 H 1.09000 * 109.46773 * 60.00507 * 1 2 3 30 30 H 1.08999 * 109.46629 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47144 * 299.99860 * 1 2 3 32 32 H 0.97002 * 119.99609 * 179.97438 * 7 6 4 33 33 H 1.08991 * 109.47054 * 264.20942 * 13 12 2 34 34 H 1.08998 * 109.46642 * 144.21304 * 13 12 2 35 35 H 1.09000 * 109.47121 * 24.21594 * 13 12 2 36 36 H 1.08001 * 120.02352 * 359.97438 * 20 19 18 37 37 H 1.08006 * 119.94322 * 180.27826 * 21 20 19 38 38 H 1.07996 * 119.91974 * 179.74523 * 22 21 20 39 39 H 1.08003 * 119.97528 * 180.02562 * 23 22 21 40 40 H 1.08009 * 126.46529 * 179.74990 * 26 18 17 41 41 H 0.96694 * 113.99645 * 270.04095 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3213 -1.1204 4.0080 9 1 3.6296 -0.5459 4.4124 10 1 1.3431 -0.9493 5.1120 11 1 2.4858 -2.5663 3.7120 12 7 2.0184 -0.6907 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7933 -0.0356 -2.0833 15 8 3.1483 1.1048 -1.8549 16 6 3.2105 -0.7018 -3.3309 17 7 2.8365 -1.8987 -3.7438 18 7 3.3846 -2.1698 -4.8736 19 6 3.1977 -3.3588 -5.5914 20 6 3.8423 -3.5467 -6.8065 21 6 3.6610 -4.7221 -7.5088 22 6 2.8290 -5.7076 -7.0095 23 6 2.1799 -5.5230 -5.8030 24 6 2.3616 -4.3510 -5.0910 25 9 1.7278 -4.1704 -3.9116 26 6 4.1780 -1.1372 -5.2691 27 6 4.0937 -0.1799 -4.3101 28 8 4.7240 1.0260 -4.2920 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.7081 1.1608 3.4844 33 1 2.4659 -2.7353 -1.0625 34 1 1.5233 -2.2605 -2.4957 35 1 0.7411 -2.3273 -0.8982 36 1 4.4885 -2.7762 -7.2002 37 1 4.1662 -4.8699 -8.4519 38 1 2.6864 -6.6237 -7.5633 39 1 1.5312 -6.2947 -5.4156 40 1 4.7643 -1.0885 -6.1749 41 1 5.5907 1.0102 -3.8636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268421835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:42 Heat of formation + Delta-G solvation = -6.349236 kcal Electronic energy + Delta-G solvation = -28712.755629 eV Core-core repulsion = 24509.877745 eV Total energy + Delta-G solvation = -4202.877884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.91964 -44.06438 -40.66304 -39.86830 -38.32533 -37.15251 -35.09374 -34.37025 -31.97939 -31.78488 -30.87245 -30.01434 -27.75971 -27.34430 -25.87823 -24.50635 -23.36484 -22.27061 -22.18367 -20.52416 -19.69614 -18.66958 -18.52211 -18.09748 -17.94727 -17.51440 -17.30763 -16.97164 -16.51470 -16.24950 -15.93465 -15.77592 -15.63765 -15.30674 -14.86291 -14.78211 -14.50382 -14.25794 -14.04935 -13.65933 -13.50137 -13.38356 -12.99888 -12.95139 -12.78861 -12.75285 -12.29443 -12.23828 -12.14722 -12.14001 -11.48169 -11.28854 -11.22858 -10.90722 -10.55863 -10.24136 -9.95361 -9.49967 -9.22517 -8.17597 -6.34707 -0.49056 0.09393 0.54599 0.99996 1.10255 1.38716 1.40377 1.51084 2.16385 2.27353 2.42784 2.55815 2.86781 3.08932 3.09590 3.47471 3.62499 3.71260 3.79920 4.04628 4.21467 4.25780 4.37171 4.42635 4.52231 4.69521 4.72042 4.81543 4.82861 4.89863 4.99160 5.04193 5.11421 5.19511 5.34737 5.38728 5.52050 5.58863 5.63235 5.87902 5.97350 6.10450 6.53417 6.68969 6.71498 6.74290 7.19276 7.38573 8.87376 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015498 B = 0.003447 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.297914 B = 8121.033740 C = 9276.604803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.015 0.985 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.969 3.031 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.266 1.266 12 N -0.584 5.584 13 C 0.087 3.913 14 C 0.574 3.426 15 O -0.579 6.579 16 C -0.046 4.046 17 N -0.250 5.250 18 N -0.228 5.228 19 C 0.066 3.934 20 C -0.092 4.092 21 C -0.096 4.096 22 C -0.076 4.076 23 C -0.140 4.140 24 C 0.076 3.924 25 F -0.138 7.138 26 C -0.012 4.012 27 C 0.034 3.966 28 O -0.464 6.464 29 H 0.019 0.981 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.267 0.733 33 H 0.039 0.961 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.172 0.828 37 H 0.183 0.817 38 H 0.177 0.823 39 H 0.159 0.841 40 H 0.245 0.755 41 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.254 -17.244 -26.330 32.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.033 0.967 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.793 3.207 9 H -0.204 1.204 10 H -0.199 1.199 11 H -0.190 1.190 12 N -0.314 5.314 13 C -0.056 4.056 14 C 0.361 3.639 15 O -0.459 6.459 16 C -0.206 4.206 17 N -0.085 5.085 18 N -0.011 5.011 19 C -0.025 4.025 20 C -0.112 4.112 21 C -0.114 4.114 22 C -0.094 4.094 23 C -0.159 4.159 24 C 0.055 3.945 25 F -0.116 7.116 26 C -0.152 4.152 27 C -0.022 4.022 28 O -0.272 6.272 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.124 0.876 35 H 0.087 0.913 36 H 0.190 0.810 37 H 0.201 0.799 38 H 0.195 0.805 39 H 0.177 0.823 40 H 0.261 0.739 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 6.148 -17.247 -26.008 31.806 hybrid contribution 0.737 0.822 1.915 2.210 sum 6.885 -16.425 -24.093 29.961 Atomic orbital electron populations 1.21900 0.96879 1.00115 1.00200 1.18672 0.91817 0.92315 0.81185 0.96711 1.21498 1.32272 1.13051 0.91197 0.92769 1.25753 0.94926 0.95663 1.01946 1.70013 1.36983 1.23774 1.24631 0.85401 0.78031 0.78946 0.78302 1.20449 1.19947 1.18995 1.48152 1.47938 1.13233 1.22075 1.22054 1.00096 0.79950 1.03526 1.17424 0.79043 0.85103 0.82378 1.90717 1.57956 1.19303 1.77914 1.22617 1.05635 0.93598 0.98739 1.74002 1.19742 1.15321 0.99441 1.42708 1.31646 1.13062 1.13702 1.18279 1.04517 0.83957 0.95715 1.21287 0.98905 1.00969 0.90055 1.21615 0.97658 0.90982 1.01134 1.21698 0.93440 1.00884 0.93371 1.21487 1.02668 0.95194 0.96589 1.17986 0.96222 0.96125 0.84208 1.91556 1.79890 1.95526 1.44648 1.23456 1.01014 0.86842 1.03918 1.18292 1.00396 0.89117 0.94350 1.84837 1.37321 1.24346 1.80657 0.96226 0.93594 0.90575 0.92386 0.94200 0.87645 0.91349 0.81021 0.79939 0.80514 0.82296 0.73893 0.73835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.08 8.96 71.98 0.64 -6.44 16 2 C 0.26 15.20 2.63 44.24 0.12 15.31 16 3 H 0.01 1.00 6.90 -2.39 -0.02 0.99 16 4 C -0.54 -32.20 8.37 25.60 0.21 -31.99 16 5 H 0.05 3.19 7.65 -2.91 -0.02 3.17 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.92 -55.12 11.32 21.45 0.24 -54.88 16 8 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 9 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 N -0.58 -30.12 2.75 -830.65 -2.29 -32.40 16 13 C 0.09 3.78 9.03 127.77 1.15 4.94 16 14 C 0.57 29.38 7.67 86.67 0.66 30.05 16 15 O -0.58 -33.58 15.87 -2.11 -0.03 -33.61 16 16 C -0.05 -1.89 6.86 42.43 0.29 -1.60 16 17 N -0.25 -8.92 6.69 -48.05 -0.32 -9.24 16 18 N -0.23 -6.06 3.52 -186.67 -0.66 -6.72 16 19 C 0.07 1.30 6.67 38.15 0.25 1.55 16 20 C -0.09 -0.83 9.43 22.38 0.21 -0.62 16 21 C -0.10 -0.34 10.04 22.26 0.22 -0.12 16 22 C -0.08 -0.37 10.04 22.29 0.22 -0.14 16 23 C -0.14 -1.70 10.02 22.29 0.22 -1.47 16 24 C 0.08 1.60 7.27 22.49 0.16 1.76 16 25 F -0.14 -4.00 14.58 44.97 0.66 -3.34 16 26 C -0.01 -0.27 10.81 83.46 0.90 0.63 16 27 C 0.03 1.10 7.35 22.58 0.17 1.27 16 28 O -0.46 -14.57 13.21 -92.51 -1.22 -15.79 16 29 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 2.26 6.67 -2.39 -0.02 2.25 16 31 H 0.08 4.36 6.07 -2.39 -0.01 4.35 16 32 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 34 H 0.11 4.28 4.02 -2.39 -0.01 4.27 16 35 H 0.07 2.92 6.44 -2.39 -0.02 2.91 16 36 H 0.17 0.46 6.65 -2.91 -0.02 0.44 16 37 H 0.18 -0.74 8.06 -2.91 -0.02 -0.76 16 38 H 0.18 -0.39 8.06 -2.91 -0.02 -0.41 16 39 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.24 2.34 6.96 -2.91 -0.02 2.32 16 41 H 0.40 9.11 9.06 -74.06 -0.67 8.44 16 Total: -1.00 -87.55 348.44 4.74 -82.81 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.44 Total: 11.19 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 5.90 Total: 14.56 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -3.02 Total: -103.24 kcal Atomic # 8 Polarization: -48.15 SS G_CDS: -1.26 Total: -49.41 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.66 Total: -3.34 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -87.55 4.74 -82.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268421835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.457 kcal (2) G-P(sol) polarization free energy of solvation -87.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds