Wall clock time and date at job start Tue Mar 31 2020 18:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47030 * 2 1 4 4 C 1.50706 * 109.46904 * 240.00758 * 2 1 3 5 5 H 1.08003 * 119.99725 * 274.68476 * 4 2 1 6 6 C 1.37875 * 120.00404 * 94.68625 * 4 2 1 7 7 N 1.31507 * 120.00067 * 184.43908 * 6 4 2 8 8 Si 1.86801 * 119.99954 * 4.43296 * 6 4 2 9 9 H 1.48497 * 109.46864 * 94.33639 * 8 6 4 10 10 H 1.48503 * 109.47171 * 214.33869 * 8 6 4 11 11 H 1.48505 * 109.47048 * 334.33627 * 8 6 4 12 12 N 1.46495 * 109.47411 * 120.00169 * 2 1 3 13 13 C 1.46504 * 119.99496 * 59.99783 * 12 2 1 14 14 C 1.34771 * 120.00141 * 239.99789 * 12 2 1 15 15 O 1.21595 * 120.00175 * 3.31318 * 14 12 2 16 16 C 1.47476 * 119.99875 * 183.30953 * 14 12 2 17 17 N 1.32012 * 126.44531 * 354.06810 * 16 14 12 18 18 N 1.28453 * 110.21618 * 179.97438 * 17 16 14 19 19 C 1.40138 * 124.93602 * 179.97438 * 18 17 16 20 20 C 1.38827 * 120.08273 * 179.74626 * 19 18 17 21 21 C 1.38115 * 119.95687 * 179.72761 * 20 19 18 22 22 C 1.38300 * 120.11795 * 0.57321 * 21 20 19 23 23 C 1.38250 * 120.15609 * 359.70471 * 22 21 20 24 24 C 1.38334 * 120.04428 * 359.97438 * 23 22 21 25 25 F 1.35100 * 120.05936 * 179.97438 * 24 23 22 26 26 C 1.36100 * 110.13023 * 0.02562 * 18 17 16 27 27 C 1.35761 * 107.06632 * 0.26247 * 26 18 17 28 28 O 1.36076 * 127.25991 * 179.73523 * 27 26 18 29 29 H 1.09004 * 109.46788 * 294.95420 * 1 2 3 30 30 H 1.09006 * 109.47233 * 54.95022 * 1 2 3 31 31 H 1.08995 * 109.47533 * 174.95342 * 1 2 3 32 32 H 0.97000 * 120.00384 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47581 * 263.95087 * 13 12 2 34 34 H 1.08999 * 109.47166 * 23.96360 * 13 12 2 35 35 H 1.09003 * 109.46967 * 143.95600 * 13 12 2 36 36 H 1.08002 * 120.02017 * 0.02562 * 20 19 18 37 37 H 1.07999 * 119.94132 * 180.29971 * 21 20 19 38 38 H 1.07996 * 119.91990 * 179.72057 * 22 21 20 39 39 H 1.07998 * 119.97413 * 180.02562 * 23 22 21 40 40 H 1.08002 * 126.46498 * 179.97438 * 26 18 17 41 41 H 0.96706 * 113.99778 * 90.03285 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1402 -1.7849 -1.2276 6 6 2.3540 0.0117 -2.3603 7 7 2.7087 -0.6137 -3.4615 8 14 2.2861 1.8781 -2.3268 9 1 3.6337 2.4169 -2.0125 10 1 1.8487 2.3815 -3.6537 11 1 1.3217 2.3198 -1.2874 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4278 14 6 2.7932 -0.0357 2.0832 15 8 3.0374 1.1446 1.9223 16 6 3.3449 -0.7505 3.2492 17 7 3.0761 -1.9925 3.6069 18 7 3.7280 -2.2991 4.6704 19 6 3.6708 -3.5413 5.3166 20 6 4.4243 -3.7658 6.4608 21 6 4.3617 -4.9892 7.0988 22 6 3.5587 -5.9952 6.5932 23 6 2.8107 -5.7788 5.4508 24 6 2.8633 -4.5538 4.8103 25 9 2.1329 -4.3421 3.6936 26 6 4.4814 -1.2419 5.0792 27 6 4.2593 -0.2310 4.2006 28 8 4.8022 1.0165 4.2257 29 1 -0.3633 0.4336 0.9318 30 1 -0.3634 0.5902 -0.8413 31 1 -0.3634 -1.0236 -0.0904 32 1 2.9347 -0.1058 -4.2564 33 1 0.7990 -2.1453 2.0885 34 1 1.4249 -2.5694 0.4770 35 1 2.5061 -2.6087 1.8904 36 1 5.0554 -2.9827 6.8545 37 1 4.9443 -5.1619 7.9916 38 1 3.5156 -6.9521 7.0920 39 1 2.1842 -6.5663 5.0588 40 1 5.1296 -1.2113 5.9424 41 1 5.6327 1.0939 3.7362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268421838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:47 Heat of formation + Delta-G solvation = 18.873362 kcal Electronic energy + Delta-G solvation = -28818.736582 eV Core-core repulsion = 24616.952432 eV Total energy + Delta-G solvation = -4201.784150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.04037 -42.93961 -39.49961 -38.70503 -37.19449 -35.27812 -33.78538 -32.54080 -31.31289 -30.70772 -29.81952 -29.08863 -26.06646 -25.24046 -24.63414 -23.74991 -22.23807 -21.32051 -20.60321 -19.12350 -18.38476 -17.74564 -17.25065 -17.17106 -16.63266 -16.27547 -16.10040 -15.63368 -15.37767 -15.23072 -14.76173 -14.37259 -14.23671 -14.01534 -13.89378 -13.49630 -13.00605 -12.76197 -12.53396 -12.47088 -12.29988 -12.28204 -12.12574 -11.71249 -11.34701 -11.02946 -10.94069 -10.69269 -10.44563 -10.31413 -10.14084 -9.67473 -9.39395 -9.27936 -9.15801 -9.11228 -8.55600 -8.39508 -7.55525 -6.12121 -4.13948 0.25208 0.62137 1.84143 1.93867 2.06633 3.09457 3.34418 3.43081 3.50830 3.64449 3.71486 3.92525 4.01671 4.25222 4.36869 4.43147 4.55517 4.60837 4.69430 4.90460 4.99517 5.17671 5.30329 5.42230 5.49750 5.58149 5.61529 5.80882 5.99971 6.14773 6.19592 6.28082 6.38308 6.51118 6.58739 6.65543 6.81022 7.00770 7.16918 7.53748 7.68674 7.69380 7.76766 8.21077 8.55038 8.89609 8.97649 9.50353 10.99704 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.003579 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.083393 B = 7822.072853 C = 8870.100976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.220 3.780 3 H 0.068 0.932 4 C -0.523 4.523 5 H 0.079 0.921 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.873 3.127 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.258 1.258 12 N -0.569 5.569 13 C 0.082 3.918 14 C 0.583 3.417 15 O -0.540 6.540 16 C -0.001 4.001 17 N -0.233 5.233 18 N -0.241 5.241 19 C 0.110 3.890 20 C -0.104 4.104 21 C -0.108 4.108 22 C -0.094 4.094 23 C -0.135 4.135 24 C 0.113 3.887 25 F -0.107 7.107 26 C -0.048 4.048 27 C 0.057 3.943 28 O -0.451 6.451 29 H 0.027 0.973 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.266 0.734 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.148 0.852 40 H 0.188 0.812 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.409 -11.340 23.755 26.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.120 3.880 3 H 0.086 0.914 4 C -0.561 4.561 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.529 5.529 8 Si 0.699 3.301 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.183 1.183 12 N -0.299 5.299 13 C -0.062 4.062 14 C 0.367 3.633 15 O -0.417 6.417 16 C -0.164 4.164 17 N -0.066 5.066 18 N -0.023 5.023 19 C 0.018 3.982 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.113 4.113 23 C -0.155 4.155 24 C 0.092 3.908 25 F -0.085 7.085 26 C -0.187 4.187 27 C 0.002 3.998 28 O -0.257 6.257 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.166 0.834 40 H 0.205 0.795 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 3.436 -11.459 23.435 26.312 hybrid contribution 0.817 1.440 -0.359 1.694 sum 4.253 -10.019 23.076 25.514 Atomic orbital electron populations 1.22198 0.98140 1.00950 0.99122 1.19467 0.91027 0.95097 0.82438 0.91421 1.21140 1.44569 0.95805 0.94613 0.90300 1.24949 0.93768 0.98525 0.95203 1.69893 1.45285 1.35997 1.01742 0.86895 0.79694 0.86133 0.77329 1.19887 1.21251 1.18279 1.48251 1.47298 1.12287 1.22080 1.21936 1.00588 0.82240 1.01457 1.16870 0.79814 0.85896 0.80705 1.90762 1.60956 1.14644 1.75324 1.23101 1.02723 0.90917 0.99662 1.74278 1.16954 1.15289 1.00081 1.42322 1.32147 1.09043 1.18815 1.17738 1.01806 0.82894 0.95776 1.20813 0.99114 0.99251 0.93262 1.21048 0.99348 0.92015 1.00309 1.21157 0.95261 0.99851 0.95000 1.21202 1.01877 0.95546 0.96848 1.17389 0.93756 0.93488 0.86198 1.91653 1.74057 1.95000 1.47829 1.22808 1.03346 0.87673 1.04875 1.18091 0.99723 0.86702 0.95264 1.84886 1.42728 1.22785 1.75269 0.95431 0.92583 0.93097 0.92449 0.94006 0.90507 0.90034 0.83945 0.84124 0.84219 0.83444 0.79475 0.75490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.10 37.16 0.34 -2.94 16 2 C 0.22 5.63 2.24 -69.08 -0.16 5.48 16 3 H 0.07 1.87 3.87 -51.92 -0.20 1.67 16 4 C -0.52 -14.92 8.69 -34.44 -0.30 -15.22 16 5 H 0.08 2.39 6.91 -52.48 -0.36 2.02 16 6 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 7 N -0.89 -27.28 13.96 55.43 0.77 -26.50 16 8 Si 0.87 22.59 27.27 -169.99 -4.64 17.95 16 9 H -0.27 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.26 -6.52 6.41 56.52 0.36 -6.16 16 12 N -0.57 -13.34 2.75 -176.51 -0.49 -13.83 16 13 C 0.08 1.65 8.72 59.85 0.52 2.17 16 14 C 0.58 13.61 7.67 -12.50 -0.10 13.52 16 15 O -0.54 -14.04 15.87 3.40 0.05 -13.99 16 16 C 0.00 -0.02 6.83 -82.66 -0.56 -0.59 16 17 N -0.23 -4.05 6.67 33.46 0.22 -3.83 16 18 N -0.24 -3.35 3.52 -10.36 -0.04 -3.39 16 19 C 0.11 1.21 6.67 -83.54 -0.56 0.66 16 20 C -0.10 -0.73 9.43 -39.41 -0.37 -1.10 16 21 C -0.11 -0.54 10.04 -39.60 -0.40 -0.94 16 22 C -0.09 -0.48 10.04 -39.55 -0.40 -0.88 16 23 C -0.14 -1.01 10.02 -39.54 -0.40 -1.41 16 24 C 0.11 1.26 7.27 -39.24 -0.29 0.97 16 25 F -0.11 -1.51 15.00 2.25 0.03 -1.48 16 26 C -0.05 -0.59 10.81 -16.55 -0.18 -0.77 16 27 C 0.06 0.93 7.35 -39.10 -0.29 0.64 16 28 O -0.45 -6.93 13.21 -21.86 -0.29 -7.22 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 1.08 7.84 -51.93 -0.41 0.67 16 32 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.60 6.64 -51.93 -0.34 1.25 16 35 H 0.08 1.60 4.83 -51.93 -0.25 1.35 16 36 H 0.14 0.67 6.65 -52.49 -0.35 0.32 16 37 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 38 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 39 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.19 1.42 6.96 -52.49 -0.37 1.06 16 41 H 0.39 4.30 9.07 45.56 0.41 4.71 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -37.18 348.90 -5.91 -43.09 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -3.58 Total: 2.13 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -3.22 Total: 1.81 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.47 Total: -47.55 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.23 Total: -21.20 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.03 Total: -1.48 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.64 Total: 17.95 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.18 -5.91 -43.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268421838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.960 kcal (2) G-P(sol) polarization free energy of solvation -37.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds