Wall clock time and date at job start Tue Mar 31 2020 18:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47030 * 2 1 4 4 C 1.50706 * 109.46904 * 240.00758 * 2 1 3 5 5 H 1.08003 * 119.99725 * 274.68476 * 4 2 1 6 6 C 1.37875 * 120.00404 * 94.68625 * 4 2 1 7 7 N 1.31507 * 120.00067 * 184.43908 * 6 4 2 8 8 Si 1.86801 * 119.99954 * 4.43296 * 6 4 2 9 9 H 1.48497 * 109.46864 * 94.33639 * 8 6 4 10 10 H 1.48503 * 109.47171 * 214.33869 * 8 6 4 11 11 H 1.48505 * 109.47048 * 334.33627 * 8 6 4 12 12 N 1.46495 * 109.47411 * 120.00169 * 2 1 3 13 13 C 1.46504 * 119.99496 * 59.99783 * 12 2 1 14 14 C 1.34771 * 120.00141 * 239.99789 * 12 2 1 15 15 O 1.21595 * 120.00175 * 3.31318 * 14 12 2 16 16 C 1.47476 * 119.99875 * 183.30953 * 14 12 2 17 17 N 1.32012 * 126.44531 * 354.06810 * 16 14 12 18 18 N 1.28453 * 110.21618 * 179.97438 * 17 16 14 19 19 C 1.40138 * 124.93602 * 179.97438 * 18 17 16 20 20 C 1.38827 * 120.08273 * 179.74626 * 19 18 17 21 21 C 1.38115 * 119.95687 * 179.72761 * 20 19 18 22 22 C 1.38300 * 120.11795 * 0.57321 * 21 20 19 23 23 C 1.38250 * 120.15609 * 359.70471 * 22 21 20 24 24 C 1.38334 * 120.04428 * 359.97438 * 23 22 21 25 25 F 1.35100 * 120.05936 * 179.97438 * 24 23 22 26 26 C 1.36100 * 110.13023 * 0.02562 * 18 17 16 27 27 C 1.35761 * 107.06632 * 0.26247 * 26 18 17 28 28 O 1.36076 * 127.25991 * 179.73523 * 27 26 18 29 29 H 1.09004 * 109.46788 * 294.95420 * 1 2 3 30 30 H 1.09006 * 109.47233 * 54.95022 * 1 2 3 31 31 H 1.08995 * 109.47533 * 174.95342 * 1 2 3 32 32 H 0.97000 * 120.00384 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47581 * 263.95087 * 13 12 2 34 34 H 1.08999 * 109.47166 * 23.96360 * 13 12 2 35 35 H 1.09003 * 109.46967 * 143.95600 * 13 12 2 36 36 H 1.08002 * 120.02017 * 0.02562 * 20 19 18 37 37 H 1.07999 * 119.94132 * 180.29971 * 21 20 19 38 38 H 1.07996 * 119.91990 * 179.72057 * 22 21 20 39 39 H 1.07998 * 119.97413 * 180.02562 * 23 22 21 40 40 H 1.08002 * 126.46498 * 179.97438 * 26 18 17 41 41 H 0.96706 * 113.99778 * 90.03285 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1402 -1.7849 -1.2276 6 6 2.3540 0.0117 -2.3603 7 7 2.7087 -0.6137 -3.4615 8 14 2.2861 1.8781 -2.3268 9 1 3.6337 2.4169 -2.0125 10 1 1.8487 2.3815 -3.6537 11 1 1.3217 2.3198 -1.2874 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4278 14 6 2.7932 -0.0357 2.0832 15 8 3.0374 1.1446 1.9223 16 6 3.3449 -0.7505 3.2492 17 7 3.0761 -1.9925 3.6069 18 7 3.7280 -2.2991 4.6704 19 6 3.6708 -3.5413 5.3166 20 6 4.4243 -3.7658 6.4608 21 6 4.3617 -4.9892 7.0988 22 6 3.5587 -5.9952 6.5932 23 6 2.8107 -5.7788 5.4508 24 6 2.8633 -4.5538 4.8103 25 9 2.1329 -4.3421 3.6936 26 6 4.4814 -1.2419 5.0792 27 6 4.2593 -0.2310 4.2006 28 8 4.8022 1.0165 4.2257 29 1 -0.3633 0.4336 0.9318 30 1 -0.3634 0.5902 -0.8413 31 1 -0.3634 -1.0236 -0.0904 32 1 2.9347 -0.1058 -4.2564 33 1 0.7990 -2.1453 2.0885 34 1 1.4249 -2.5694 0.4770 35 1 2.5061 -2.6087 1.8904 36 1 5.0554 -2.9827 6.8545 37 1 4.9443 -5.1619 7.9916 38 1 3.5156 -6.9521 7.0920 39 1 2.1842 -6.5663 5.0588 40 1 5.1296 -1.2113 5.9424 41 1 5.6327 1.0939 3.7362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268421838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:46 Heat of formation + Delta-G solvation = -8.253091 kcal Electronic energy + Delta-G solvation = -28819.912873 eV Core-core repulsion = 24616.952432 eV Total energy + Delta-G solvation = -4202.960441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.91126 -44.06678 -40.71792 -39.88347 -38.32881 -37.17222 -35.01704 -34.39833 -32.39558 -31.96159 -30.97816 -30.08725 -27.78557 -27.33424 -25.89076 -24.50967 -23.31274 -22.26845 -22.11233 -20.46070 -19.69901 -19.26083 -18.62529 -18.11429 -17.93018 -17.51091 -17.39520 -16.97582 -16.53183 -16.24749 -15.83359 -15.79012 -15.60219 -15.29450 -14.91834 -14.84620 -14.48202 -14.26506 -14.22863 -13.97900 -13.66866 -13.41349 -13.17721 -13.05270 -12.95481 -12.72253 -12.45001 -12.31091 -12.21588 -11.79086 -11.54658 -11.30172 -11.24496 -10.94485 -10.80728 -10.23677 -9.95706 -9.52700 -9.22968 -8.39618 -6.44814 -0.48982 0.08988 0.54140 0.99598 1.11023 1.26162 1.32058 1.43121 2.09269 2.25795 2.27407 2.55356 2.83975 3.01477 3.09665 3.47155 3.61015 3.71408 3.79123 4.04019 4.21127 4.25535 4.35874 4.40706 4.46371 4.54640 4.59642 4.69105 4.75867 4.81466 4.89553 5.03479 5.05626 5.08592 5.19039 5.28492 5.34340 5.48156 5.55173 5.73741 5.88302 6.10746 6.52720 6.59059 6.64449 6.71319 7.14056 7.25769 8.75830 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.003579 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.083393 B = 7822.072853 C = 8870.100976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.220 3.780 3 H 0.048 0.952 4 C -0.523 4.523 5 H 0.049 0.951 6 C 0.031 3.969 7 N -0.932 5.932 8 Si 0.927 3.073 9 H -0.281 1.281 10 H -0.270 1.270 11 H -0.250 1.250 12 N -0.581 5.581 13 C 0.094 3.906 14 C 0.577 3.423 15 O -0.579 6.579 16 C -0.049 4.049 17 N -0.248 5.248 18 N -0.229 5.229 19 C 0.066 3.934 20 C -0.093 4.093 21 C -0.096 4.096 22 C -0.076 4.076 23 C -0.141 4.141 24 C 0.076 3.924 25 F -0.137 7.137 26 C -0.014 4.014 27 C 0.034 3.966 28 O -0.463 6.463 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.270 0.730 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.172 0.828 37 H 0.183 0.817 38 H 0.177 0.823 39 H 0.159 0.841 40 H 0.244 0.756 41 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.488 -12.797 28.041 31.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.119 3.881 3 H 0.066 0.934 4 C -0.562 4.562 5 H 0.068 0.932 6 C -0.169 4.169 7 N -0.571 5.571 8 Si 0.752 3.248 9 H -0.207 1.207 10 H -0.195 1.195 11 H -0.174 1.174 12 N -0.311 5.311 13 C -0.049 4.049 14 C 0.364 3.636 15 O -0.458 6.458 16 C -0.208 4.208 17 N -0.083 5.083 18 N -0.012 5.012 19 C -0.025 4.025 20 C -0.112 4.112 21 C -0.114 4.114 22 C -0.094 4.094 23 C -0.160 4.160 24 C 0.055 3.945 25 F -0.116 7.116 26 C -0.154 4.154 27 C -0.021 4.021 28 O -0.271 6.271 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.190 0.810 37 H 0.201 0.799 38 H 0.195 0.805 39 H 0.177 0.823 40 H 0.260 0.740 41 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 4.501 -12.953 27.731 30.936 hybrid contribution 0.572 1.575 -1.427 2.201 sum 5.072 -11.378 26.304 29.105 Atomic orbital electron populations 1.22073 0.95740 1.01776 1.00080 1.19304 0.92820 0.93765 0.82249 0.93391 1.21292 1.44223 0.94648 0.96006 0.93244 1.25636 0.93734 1.02632 0.94900 1.69989 1.46909 1.37691 1.02506 0.86030 0.79415 0.81211 0.78177 1.20650 1.19458 1.17430 1.48218 1.47844 1.13288 1.21705 1.21899 1.01444 0.80669 1.00891 1.17379 0.78937 0.85759 0.81550 1.90701 1.62187 1.16280 1.76678 1.22611 1.05721 0.92407 1.00087 1.74114 1.18047 1.14387 1.01792 1.42667 1.30627 1.10379 1.17510 1.18272 1.04553 0.81799 0.97832 1.21285 0.97771 1.00911 0.91279 1.21610 0.98424 0.90605 1.00769 1.21697 0.93012 1.01413 0.93283 1.21490 1.02520 0.94437 0.97544 1.17986 0.94847 0.95362 0.86342 1.91567 1.75058 1.95347 1.49616 1.23455 1.01938 0.85434 1.04611 1.18287 1.00246 0.87802 0.95772 1.84836 1.43777 1.22993 1.75476 0.93793 0.92345 0.92236 0.92057 0.92530 0.91872 0.89432 0.81042 0.79942 0.80519 0.82328 0.74014 0.73878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.28 9.10 71.98 0.65 -5.63 16 2 C 0.22 11.64 2.24 44.25 0.10 11.74 16 3 H 0.05 2.73 3.87 -2.38 -0.01 2.72 16 4 C -0.52 -31.12 8.69 25.60 0.22 -30.89 16 5 H 0.05 3.17 6.91 -2.91 -0.02 3.15 16 6 C 0.03 1.86 5.47 84.66 0.46 2.32 16 7 N -0.93 -58.77 13.96 21.45 0.30 -58.47 16 8 Si 0.93 47.72 27.27 68.60 1.87 49.59 16 9 H -0.28 -14.67 7.11 99.48 0.71 -13.96 16 10 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.25 -12.46 6.41 99.48 0.64 -11.82 16 12 N -0.58 -28.44 2.75 -830.63 -2.29 -30.73 16 13 C 0.09 3.98 8.72 127.77 1.11 5.10 16 14 C 0.58 28.19 7.67 86.68 0.67 28.86 16 15 O -0.58 -31.46 15.87 -2.22 -0.04 -31.49 16 16 C -0.05 -1.94 6.83 42.44 0.29 -1.65 16 17 N -0.25 -8.77 6.67 -48.05 -0.32 -9.09 16 18 N -0.23 -6.08 3.52 -186.68 -0.66 -6.73 16 19 C 0.07 1.31 6.67 38.15 0.25 1.57 16 20 C -0.09 -0.86 9.43 22.38 0.21 -0.65 16 21 C -0.10 -0.38 10.04 22.26 0.22 -0.15 16 22 C -0.08 -0.40 10.04 22.29 0.22 -0.17 16 23 C -0.14 -1.76 10.02 22.30 0.22 -1.54 16 24 C 0.08 1.62 7.27 22.49 0.16 1.79 16 25 F -0.14 -4.04 15.00 44.97 0.67 -3.36 16 26 C -0.01 -0.32 10.81 83.46 0.90 0.58 16 27 C 0.03 1.10 7.35 22.58 0.17 1.26 16 28 O -0.46 -14.17 13.21 -92.62 -1.22 -15.39 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.81 16 30 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 31 H 0.06 2.56 7.84 -2.39 -0.02 2.54 16 32 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.06 2.79 6.64 -2.39 -0.02 2.78 16 35 H 0.09 3.63 4.83 -2.39 -0.01 3.62 16 36 H 0.17 0.51 6.65 -2.91 -0.02 0.49 16 37 H 0.18 -0.68 8.06 -2.91 -0.02 -0.71 16 38 H 0.18 -0.33 8.06 -2.91 -0.02 -0.35 16 39 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.24 2.36 6.96 -2.91 -0.02 2.34 16 41 H 0.40 8.96 9.07 -74.05 -0.67 8.29 16 Total: -1.00 -87.80 348.90 4.56 -83.24 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.37 Total: 9.91 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 5.88 Total: 12.53 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -2.96 Total: -105.02 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -1.26 Total: -46.89 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.67 Total: -3.36 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 1.87 Total: 49.59 kcal Total: -87.80 4.56 -83.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268421838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.983 kcal (2) G-P(sol) polarization free energy of solvation -87.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds