Wall clock time and date at job start Tue Mar 31 2020 18:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47251 * 2 1 4 4 C 1.36932 * 119.99969 * 270.88958 * 3 2 1 5 5 H 1.07998 * 120.00457 * 326.01248 * 4 3 2 6 6 C 1.38814 * 119.99882 * 146.02198 * 4 3 2 7 7 N 1.31621 * 119.99646 * 336.65331 * 6 4 3 8 8 Si 1.86798 * 120.00088 * 156.66000 * 6 4 3 9 9 H 1.48498 * 109.47629 * 89.99591 * 8 6 4 10 10 H 1.48506 * 109.47064 * 209.99585 * 8 6 4 11 11 H 1.48505 * 109.47145 * 329.99084 * 8 6 4 12 12 C 1.46498 * 119.99690 * 90.89147 * 3 2 1 13 13 C 1.52998 * 109.47503 * 90.00043 * 12 3 2 14 14 H 1.08999 * 109.47314 * 59.99691 * 13 12 3 15 15 O 1.42905 * 109.47114 * 299.99922 * 13 12 3 16 16 C 1.52998 * 109.47473 * 179.97438 * 13 12 3 17 17 O 1.42895 * 109.47498 * 184.99797 * 16 13 12 18 18 C 1.35902 * 117.00317 * 180.02562 * 17 16 13 19 19 C 1.38752 * 120.05531 * 359.72396 * 18 17 16 20 20 C 1.38121 * 119.94352 * 179.70354 * 19 18 17 21 21 C 1.38282 * 120.05501 * 0.59695 * 20 19 18 22 22 C 1.38241 * 120.11445 * 359.67564 * 21 20 19 23 23 C 1.38175 * 120.05189 * 0.02976 * 22 21 20 24 24 C 1.50699 * 120.02390 * 179.97438 * 23 22 21 25 25 F 1.39889 * 109.47505 * 0.02562 * 24 23 22 26 26 F 1.39905 * 109.46983 * 120.02080 * 24 23 22 27 27 F 1.39903 * 109.46844 * 240.01507 * 24 23 22 28 28 H 1.09000 * 109.47001 * 59.99687 * 1 2 3 29 29 H 1.08993 * 109.47280 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46523 * 299.99897 * 1 2 3 31 31 H 1.09001 * 109.47226 * 240.00267 * 2 1 3 32 32 H 1.09000 * 109.47001 * 120.00312 * 2 1 3 33 33 H 0.97008 * 119.99614 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47581 * 329.99649 * 12 3 2 35 35 H 1.09008 * 109.46940 * 210.00207 * 12 3 2 36 36 H 0.96702 * 113.99742 * 300.00144 * 15 13 12 37 37 H 1.08999 * 109.47408 * 305.00405 * 16 13 12 38 38 H 1.09009 * 109.46976 * 64.99650 * 16 13 12 39 39 H 1.08005 * 120.02496 * 359.97438 * 19 18 17 40 40 H 1.08003 * 119.97081 * 180.30250 * 20 19 18 41 41 H 1.08005 * 119.94188 * 179.70345 * 21 20 19 42 42 H 1.07999 * 119.97849 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2293 2.0328 -1.1857 5 1 2.5757 1.4844 -2.0492 6 6 1.9979 3.3985 -1.2779 7 7 1.1735 3.9845 -0.4357 8 14 2.8563 4.4043 -2.5973 9 1 2.0184 4.4311 -3.8230 10 1 3.0614 5.7911 -2.1074 11 1 4.1718 3.7903 -2.9103 12 6 2.2812 2.0652 1.2686 13 6 3.7324 1.8225 1.6879 14 1 4.4021 2.2106 0.9204 15 8 3.9538 0.4199 1.8482 16 6 4.0070 2.5374 3.0124 17 8 5.3907 2.4086 3.3454 18 6 5.8039 2.9911 4.5015 19 6 4.8974 3.6778 5.2965 20 6 5.3186 4.2638 6.4741 21 6 6.6451 4.1771 6.8550 22 6 7.5515 3.4984 6.0620 23 6 7.1339 2.9053 4.8860 24 6 8.1226 2.1661 4.0217 25 9 9.3890 2.2168 4.6138 26 9 7.7220 0.8320 3.8913 27 9 8.1745 2.7630 2.7575 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.0115 4.9388 -0.5003 34 1 1.6115 1.6772 2.0362 35 1 2.1123 3.1351 1.1463 36 1 3.3906 0.0068 2.5171 37 1 3.7535 3.5930 2.9151 38 1 3.4006 2.0892 3.7997 39 1 3.8623 3.7502 4.9967 40 1 4.6123 4.7941 7.0957 41 1 6.9735 4.6401 7.7739 42 1 8.5871 3.4325 6.3613 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272980792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:51 Heat of formation + Delta-G solvation = -193.596189 kcal Electronic energy + Delta-G solvation = -29674.450703 eV Core-core repulsion = 25012.763995 eV Total energy + Delta-G solvation = -4661.686708 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.99409 -47.56632 -47.38344 -40.38842 -38.09205 -36.84348 -34.94475 -32.29512 -31.84371 -30.80744 -30.01227 -28.46342 -25.98897 -25.77111 -23.78214 -22.52099 -22.16611 -21.10050 -20.16699 -18.83590 -18.30769 -18.29824 -17.66664 -16.88444 -16.23200 -16.04273 -15.32620 -15.18682 -14.90854 -14.65104 -14.41558 -14.30651 -14.20434 -13.94441 -13.87723 -13.59459 -13.58773 -13.56743 -13.31561 -12.98775 -12.64798 -12.58899 -12.31140 -11.92288 -11.84250 -11.27675 -11.22419 -11.12559 -10.96045 -10.70797 -10.46735 -10.29259 -10.18040 -10.08423 -9.79308 -9.49223 -9.38894 -8.56563 -8.49839 -6.65725 -5.86020 -3.37911 0.75111 1.12219 2.74809 3.05186 3.30344 3.33705 3.41612 3.47397 3.81323 4.08405 4.44784 4.55488 4.60870 4.67188 4.87047 4.94067 5.03498 5.06242 5.24019 5.27751 5.32749 5.46530 5.53889 5.76787 5.89643 5.95235 6.10946 6.12327 6.13599 6.17588 6.40234 6.46451 6.53255 6.68649 6.91099 6.98204 7.21317 7.24459 7.40416 7.77815 8.25872 8.42810 9.11156 9.75250 10.31450 11.13977 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013411 B = 0.003412 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.405998 B = 8204.868706 C = 8370.887282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 N -0.573 5.573 4 C -0.252 4.252 5 H 0.063 0.937 6 C 0.006 3.994 7 N -0.891 5.891 8 Si 0.894 3.106 9 H -0.285 1.285 10 H -0.289 1.289 11 H -0.277 1.277 12 C 0.122 3.878 13 C 0.088 3.912 14 H 0.105 0.895 15 O -0.548 6.548 16 C 0.027 3.973 17 O -0.294 6.294 18 C 0.188 3.812 19 C -0.215 4.215 20 C -0.047 4.047 21 C -0.170 4.170 22 C -0.037 4.037 23 C -0.227 4.227 24 C 0.517 3.483 25 F -0.185 7.185 26 F -0.171 7.171 27 F -0.172 7.172 28 H 0.053 0.947 29 H 0.031 0.969 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.254 0.746 34 H 0.029 0.971 35 H 0.109 0.891 36 H 0.357 0.643 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.141 0.859 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.587 -0.304 16.459 18.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.020 3.980 3 N -0.292 5.292 4 C -0.382 4.382 5 H 0.081 0.919 6 C -0.193 4.193 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.212 1.212 10 H -0.215 1.215 11 H -0.202 1.202 12 C -0.006 4.006 13 C 0.026 3.974 14 H 0.123 0.877 15 O -0.352 6.352 16 C -0.048 4.048 17 O -0.205 6.205 18 C 0.140 3.860 19 C -0.233 4.233 20 C -0.065 4.065 21 C -0.188 4.188 22 C -0.055 4.055 23 C -0.229 4.229 24 C 0.463 3.537 25 F -0.166 7.166 26 F -0.152 7.152 27 F -0.153 7.153 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.126 0.874 36 H 0.202 0.798 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.087 -0.182 15.765 18.197 hybrid contribution -0.119 0.666 -0.221 0.712 sum 8.968 0.485 15.544 17.952 Atomic orbital electron populations 1.22305 0.99934 0.98362 1.01759 1.20876 0.91392 0.87009 0.98703 1.43605 1.73843 1.10025 1.01723 1.19118 1.37829 0.91190 0.90072 0.91913 1.25051 0.97462 0.98509 0.98264 1.69970 1.33585 1.10434 1.39413 0.86436 0.80183 0.79511 0.81596 1.21220 1.21461 1.20210 1.21462 0.88772 1.03041 0.87342 1.23120 1.02106 0.80201 0.91994 0.87687 1.86664 1.64622 1.21750 1.62123 1.24033 0.78347 1.02494 0.99976 1.86314 1.29325 1.69831 1.35031 1.18769 0.91578 0.89641 0.86040 1.21371 1.00476 1.04067 0.97433 1.21189 0.95963 0.94793 0.94560 1.21001 0.93295 1.03203 1.01321 1.20850 1.00601 0.92999 0.91065 1.19356 0.92037 1.11237 1.00275 1.17986 0.79151 0.77757 0.78778 1.93123 1.43271 1.96381 1.83869 1.93239 1.90390 1.35632 1.95976 1.93241 1.96369 1.83433 1.42267 0.92737 0.95034 0.94016 0.94054 0.94305 0.93566 0.95293 0.87371 0.79765 0.90689 0.91858 0.84115 0.84938 0.84945 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 10.24 37.16 0.38 -2.82 16 2 C 0.15 3.03 6.12 -4.04 -0.02 3.01 16 3 N -0.57 -13.64 2.37 -173.24 -0.41 -14.05 16 4 C -0.25 -6.73 9.48 -15.06 -0.14 -6.87 16 5 H 0.06 1.70 7.93 -52.49 -0.42 1.29 16 6 C 0.01 0.17 4.94 -17.43 -0.09 0.08 16 7 N -0.89 -24.31 11.34 55.49 0.63 -23.68 16 8 Si 0.89 21.22 29.61 -169.99 -5.03 16.19 16 9 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.12 2.59 4.99 -4.04 -0.02 2.57 16 13 C 0.09 1.67 3.52 -26.73 -0.09 1.58 16 14 H 0.11 2.34 8.14 -51.93 -0.42 1.92 16 15 O -0.55 -10.25 12.04 -40.06 -0.48 -10.73 16 16 C 0.03 0.42 4.38 37.16 0.16 0.58 16 17 O -0.29 -4.86 9.01 -24.26 -0.22 -5.08 16 18 C 0.19 2.67 6.57 -39.22 -0.26 2.41 16 19 C -0.21 -2.48 9.04 -39.43 -0.36 -2.84 16 20 C -0.05 -0.43 10.04 -39.61 -0.40 -0.83 16 21 C -0.17 -1.49 10.04 -39.56 -0.40 -1.88 16 22 C -0.04 -0.38 9.43 -39.60 -0.37 -0.76 16 23 C -0.23 -3.04 5.38 -104.47 -0.56 -3.60 16 24 C 0.52 7.57 2.99 36.01 0.11 7.67 16 25 F -0.18 -2.38 15.97 2.25 0.04 -2.34 16 26 F -0.17 -2.75 16.95 2.25 0.04 -2.72 16 27 F -0.17 -2.84 16.95 2.25 0.04 -2.80 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.87 8.05 -51.93 -0.42 0.45 16 32 H 0.04 0.72 6.90 -51.93 -0.36 0.36 16 33 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 35 H 0.11 2.61 5.33 -51.92 -0.28 2.33 16 36 H 0.36 5.28 8.79 45.56 0.40 5.68 16 37 H 0.07 1.12 7.65 -51.93 -0.40 0.72 16 38 H 0.06 0.82 7.67 -51.92 -0.40 0.43 16 39 H 0.14 1.47 6.30 -52.48 -0.33 1.14 16 40 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 41 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 42 H 0.14 1.16 7.16 -52.49 -0.38 0.79 16 LS Contribution 363.56 15.07 5.48 5.48 Total: -1.00 -30.17 363.56 -6.65 -36.82 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.66 Total: 4.61 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.06 Total: -1.68 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.22 Total: -37.73 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.70 Total: -15.82 kcal Atomic # 9 Polarization: -7.97 SS G_CDS: 0.11 Total: -7.86 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.17 -6.65 -36.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272980792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.779 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds