Wall clock time and date at job start Tue Mar 31 2020 18:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47251 * 2 1 4 4 C 1.36932 * 119.99969 * 270.88958 * 3 2 1 5 5 H 1.07998 * 120.00457 * 326.01248 * 4 3 2 6 6 C 1.38814 * 119.99882 * 146.02198 * 4 3 2 7 7 N 1.31621 * 119.99646 * 336.65331 * 6 4 3 8 8 Si 1.86798 * 120.00088 * 156.66000 * 6 4 3 9 9 H 1.48498 * 109.47629 * 89.99591 * 8 6 4 10 10 H 1.48506 * 109.47064 * 209.99585 * 8 6 4 11 11 H 1.48505 * 109.47145 * 329.99084 * 8 6 4 12 12 C 1.46498 * 119.99690 * 90.89147 * 3 2 1 13 13 C 1.52998 * 109.47503 * 90.00043 * 12 3 2 14 14 H 1.08999 * 109.47314 * 59.99691 * 13 12 3 15 15 O 1.42905 * 109.47114 * 299.99922 * 13 12 3 16 16 C 1.52998 * 109.47473 * 179.97438 * 13 12 3 17 17 O 1.42895 * 109.47498 * 184.99797 * 16 13 12 18 18 C 1.35902 * 117.00317 * 180.02562 * 17 16 13 19 19 C 1.38752 * 120.05531 * 359.72396 * 18 17 16 20 20 C 1.38121 * 119.94352 * 179.70354 * 19 18 17 21 21 C 1.38282 * 120.05501 * 0.59695 * 20 19 18 22 22 C 1.38241 * 120.11445 * 359.67564 * 21 20 19 23 23 C 1.38175 * 120.05189 * 0.02976 * 22 21 20 24 24 C 1.50699 * 120.02390 * 179.97438 * 23 22 21 25 25 F 1.39889 * 109.47505 * 0.02562 * 24 23 22 26 26 F 1.39905 * 109.46983 * 120.02080 * 24 23 22 27 27 F 1.39903 * 109.46844 * 240.01507 * 24 23 22 28 28 H 1.09000 * 109.47001 * 59.99687 * 1 2 3 29 29 H 1.08993 * 109.47280 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46523 * 299.99897 * 1 2 3 31 31 H 1.09001 * 109.47226 * 240.00267 * 2 1 3 32 32 H 1.09000 * 109.47001 * 120.00312 * 2 1 3 33 33 H 0.97008 * 119.99614 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47581 * 329.99649 * 12 3 2 35 35 H 1.09008 * 109.46940 * 210.00207 * 12 3 2 36 36 H 0.96702 * 113.99742 * 300.00144 * 15 13 12 37 37 H 1.08999 * 109.47408 * 305.00405 * 16 13 12 38 38 H 1.09009 * 109.46976 * 64.99650 * 16 13 12 39 39 H 1.08005 * 120.02496 * 359.97438 * 19 18 17 40 40 H 1.08003 * 119.97081 * 180.30250 * 20 19 18 41 41 H 1.08005 * 119.94188 * 179.70345 * 21 20 19 42 42 H 1.07999 * 119.97849 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2293 2.0328 -1.1857 5 1 2.5757 1.4844 -2.0492 6 6 1.9979 3.3985 -1.2779 7 7 1.1735 3.9845 -0.4357 8 14 2.8563 4.4043 -2.5973 9 1 2.0184 4.4311 -3.8230 10 1 3.0614 5.7911 -2.1074 11 1 4.1718 3.7903 -2.9103 12 6 2.2812 2.0652 1.2686 13 6 3.7324 1.8225 1.6879 14 1 4.4021 2.2106 0.9204 15 8 3.9538 0.4199 1.8482 16 6 4.0070 2.5374 3.0124 17 8 5.3907 2.4086 3.3454 18 6 5.8039 2.9911 4.5015 19 6 4.8974 3.6778 5.2965 20 6 5.3186 4.2638 6.4741 21 6 6.6451 4.1771 6.8550 22 6 7.5515 3.4984 6.0620 23 6 7.1339 2.9053 4.8860 24 6 8.1226 2.1661 4.0217 25 9 9.3890 2.2168 4.6138 26 9 7.7220 0.8320 3.8913 27 9 8.1745 2.7630 2.7575 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.0115 4.9388 -0.5003 34 1 1.6115 1.6772 2.0362 35 1 2.1123 3.1351 1.1463 36 1 3.3906 0.0068 2.5171 37 1 3.7535 3.5930 2.9151 38 1 3.4006 2.0892 3.7997 39 1 3.8623 3.7502 4.9967 40 1 4.6123 4.7941 7.0957 41 1 6.9735 4.6401 7.7739 42 1 8.5871 3.4325 6.3613 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272980792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:50 Heat of formation + Delta-G solvation = -211.553181 kcal Electronic energy + Delta-G solvation = -29675.229377 eV Core-core repulsion = 25012.763995 eV Total energy + Delta-G solvation = -4662.465381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -51.14720 -48.69087 -48.60523 -41.37478 -39.33619 -38.18595 -36.60752 -33.76308 -33.18619 -32.13593 -31.11997 -30.05853 -27.45423 -26.92053 -25.46045 -23.72794 -23.09779 -22.44027 -21.88873 -19.87761 -19.48636 -19.41419 -19.04963 -18.31869 -17.50334 -17.37076 -16.76475 -16.42282 -16.06511 -15.96628 -15.69457 -15.53909 -15.51632 -15.37504 -15.14252 -15.05320 -14.81904 -14.79975 -14.76232 -14.08164 -14.02096 -13.64716 -13.59886 -13.51789 -13.14153 -12.87408 -12.60438 -12.49161 -12.33389 -12.23295 -12.13142 -12.00219 -11.85150 -11.69135 -11.52176 -10.94581 -10.55599 -10.31171 -9.40404 -8.58379 -7.85235 -5.40752 -0.07849 0.28940 1.41351 1.46020 1.55213 1.67137 1.96851 2.49265 2.49940 2.76741 3.04243 3.20007 3.41652 3.51798 3.62887 3.83066 3.84955 3.99412 4.13170 4.15809 4.31683 4.38707 4.42929 4.49297 4.54097 4.57878 4.74647 4.87926 4.89863 5.07934 5.10449 5.22826 5.29726 5.32223 5.37924 5.54248 5.61432 5.66637 5.74840 6.19988 6.43920 6.95100 7.15825 7.86111 8.35430 9.09873 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013411 B = 0.003412 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.405998 B = 8204.868706 C = 8370.887282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.142 3.858 3 N -0.590 5.590 4 C -0.266 4.266 5 H 0.048 0.952 6 C -0.030 4.030 7 N -0.910 5.910 8 Si 0.944 3.056 9 H -0.283 1.283 10 H -0.286 1.286 11 H -0.282 1.282 12 C 0.127 3.873 13 C 0.102 3.898 14 H 0.063 0.937 15 O -0.562 6.562 16 C 0.040 3.960 17 O -0.322 6.322 18 C 0.156 3.844 19 C -0.221 4.221 20 C -0.040 4.040 21 C -0.156 4.156 22 C -0.040 4.040 23 C -0.245 4.245 24 C 0.512 3.488 25 F -0.176 7.176 26 F -0.185 7.185 27 F -0.189 7.189 28 H 0.024 0.976 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.031 0.969 32 H 0.063 0.937 33 H 0.253 0.747 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.376 0.624 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.149 0.851 40 H 0.168 0.832 41 H 0.171 0.829 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.627 0.188 19.325 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.017 3.983 3 N -0.310 5.310 4 C -0.396 4.396 5 H 0.066 0.934 6 C -0.228 4.228 7 N -0.554 5.554 8 Si 0.772 3.228 9 H -0.209 1.209 10 H -0.212 1.212 11 H -0.207 1.207 12 C 0.000 4.000 13 C 0.040 3.960 14 H 0.081 0.919 15 O -0.367 6.367 16 C -0.036 4.036 17 O -0.235 6.235 18 C 0.109 3.891 19 C -0.240 4.240 20 C -0.058 4.058 21 C -0.173 4.173 22 C -0.058 4.058 23 C -0.247 4.247 24 C 0.458 3.542 25 F -0.157 7.157 26 F -0.166 7.166 27 F -0.171 7.171 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.224 0.776 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.166 0.834 40 H 0.186 0.814 41 H 0.188 0.812 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.128 0.296 18.656 20.771 hybrid contribution -0.061 0.467 -0.997 1.103 sum 9.066 0.763 17.659 19.865 Atomic orbital electron populations 1.22149 0.98770 1.00089 1.00066 1.20998 0.92258 0.85661 0.99421 1.43827 1.74536 1.11009 1.01668 1.19221 1.37672 0.91779 0.90943 0.93423 1.25538 0.98074 0.99097 1.00062 1.70055 1.34422 1.10370 1.40555 0.85653 0.78982 0.78278 0.79850 1.20930 1.21215 1.20730 1.21363 0.90454 1.01280 0.86927 1.22574 0.99507 0.80818 0.93070 0.91933 1.86612 1.65357 1.21569 1.63209 1.23720 0.79009 1.02164 0.98666 1.86220 1.29302 1.71113 1.36878 1.19048 0.92520 0.91503 0.86055 1.21586 1.00467 1.03894 0.98033 1.21650 0.96943 0.93550 0.93651 1.21489 0.92700 1.01330 1.01807 1.21191 1.02069 0.92486 0.90036 1.19488 0.91463 1.12425 1.01345 1.18280 0.80008 0.77343 0.78529 1.93128 1.42735 1.96305 1.83520 1.93202 1.90602 1.36748 1.96055 1.93199 1.96516 1.83657 1.43705 0.95717 0.91544 0.94271 0.95021 0.91834 0.93729 0.93261 0.90017 0.77576 0.90564 0.88963 0.83355 0.81437 0.81163 0.82238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.74 10.24 71.98 0.74 -5.00 16 2 C 0.14 5.82 6.12 86.38 0.53 6.35 16 3 N -0.59 -28.48 2.37 -701.99 -1.67 -30.15 16 4 C -0.27 -14.55 9.48 84.03 0.80 -13.76 16 5 H 0.05 2.69 7.93 -2.91 -0.02 2.67 16 6 C -0.03 -1.64 4.94 84.86 0.42 -1.23 16 7 N -0.91 -50.46 11.34 21.65 0.25 -50.22 16 8 Si 0.94 44.58 29.61 68.60 2.03 46.61 16 9 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 12 C 0.13 5.43 4.99 86.38 0.43 5.86 16 13 C 0.10 3.96 3.52 30.59 0.11 4.07 16 14 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 15 O -0.56 -20.86 12.04 -144.36 -1.74 -22.60 16 16 C 0.04 1.22 4.38 71.98 0.31 1.54 16 17 O -0.32 -10.81 9.01 -87.83 -0.79 -11.60 16 18 C 0.16 4.31 6.57 22.50 0.15 4.46 16 19 C -0.22 -4.61 9.04 22.36 0.20 -4.41 16 20 C -0.04 -0.58 10.04 22.25 0.22 -0.35 16 21 C -0.16 -2.05 10.04 22.28 0.22 -1.82 16 22 C -0.04 -0.72 9.43 22.26 0.21 -0.51 16 23 C -0.25 -6.37 5.38 -19.77 -0.11 -6.48 16 24 C 0.51 15.14 2.99 71.24 0.21 15.35 16 25 F -0.18 -4.43 15.97 44.97 0.72 -3.71 16 26 F -0.18 -6.09 16.95 44.97 0.76 -5.33 16 27 F -0.19 -6.49 16.95 44.97 0.76 -5.73 16 28 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.03 1.34 8.05 -2.39 -0.02 1.32 16 32 H 0.06 2.26 6.90 -2.39 -0.02 2.25 16 33 H 0.25 13.58 8.31 -92.70 -0.77 12.81 16 34 H 0.05 1.87 8.07 -2.39 -0.02 1.85 16 35 H 0.08 4.01 5.33 -2.38 -0.01 4.00 16 36 H 0.38 10.54 8.79 -74.06 -0.65 9.89 16 37 H 0.08 2.27 7.65 -2.39 -0.02 2.25 16 38 H 0.09 2.24 7.67 -2.38 -0.02 2.22 16 39 H 0.15 2.76 6.30 -2.91 -0.02 2.74 16 40 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 41 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 42 H 0.16 2.17 7.16 -2.91 -0.02 2.15 16 Total: -1.00 -67.80 363.56 5.18 -62.63 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.41 Total: 16.03 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 4.45 Total: 4.06 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -1.42 Total: -80.37 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -2.53 Total: -34.20 kcal Atomic # 9 Polarization: -17.01 SS G_CDS: 2.24 Total: -14.76 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -67.80 5.18 -62.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272980792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.928 kcal (2) G-P(sol) polarization free energy of solvation -67.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds