Wall clock time and date at job start Tue Mar 31 2020 18:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46897 * 109.46743 * 2 1 4 4 C 1.46903 * 110.99718 * 195.79125 * 3 2 1 5 5 C 1.50699 * 109.47063 * 66.04747 * 4 3 2 6 6 C 1.38298 * 119.93280 * 269.72477 * 5 4 3 7 7 C 1.38103 * 120.06932 * 179.72508 * 6 5 4 8 8 C 1.38878 * 119.92611 * 0.56936 * 7 6 5 9 9 O 1.35748 * 120.06500 * 179.68365 * 8 7 6 10 10 C 1.34830 * 117.00005 * 185.38313 * 9 8 7 11 11 H 1.08001 * 120.00356 * 4.60987 * 10 9 8 12 12 C 1.38659 * 120.00012 * 184.60950 * 10 9 8 13 13 N 1.31551 * 120.00005 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99751 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47362 * 60.00176 * 14 12 10 16 16 H 1.48505 * 109.46957 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47135 * 299.99872 * 14 12 10 18 18 C 1.38878 * 119.86804 * 359.70690 * 8 7 6 19 19 C 1.38104 * 119.92396 * 359.97438 * 18 8 7 20 20 C 1.46906 * 111.00063 * 71.84020 * 3 2 1 21 21 C 1.53001 * 109.47095 * 199.75210 * 20 3 2 22 22 H 1.08994 * 109.47088 * 301.34296 * 21 20 3 23 23 O 1.42904 * 109.46690 * 61.34405 * 21 20 3 24 24 C 1.53002 * 109.46983 * 181.34385 * 21 20 3 25 25 F 1.39899 * 109.47154 * 60.00022 * 24 21 20 26 26 F 1.39895 * 109.47077 * 180.02562 * 24 21 20 27 27 F 1.39909 * 109.46645 * 300.00133 * 24 21 20 28 28 H 1.09011 * 109.46883 * 180.95349 * 1 2 3 29 29 H 1.09001 * 109.47133 * 300.94734 * 1 2 3 30 30 H 1.08997 * 109.47050 * 60.95521 * 1 2 3 31 31 H 1.08999 * 109.47154 * 240.00346 * 2 1 3 32 32 H 1.08998 * 109.47113 * 120.00235 * 2 1 3 33 33 H 1.09000 * 109.47033 * 186.04993 * 4 3 2 34 34 H 1.08997 * 109.47401 * 306.04642 * 4 3 2 35 35 H 1.08000 * 119.96151 * 359.97438 * 6 5 4 36 36 H 1.08001 * 120.03129 * 180.27432 * 7 6 5 37 37 H 0.96997 * 119.99993 * 180.02562 * 13 12 10 38 38 H 1.07992 * 120.03746 * 179.97438 * 18 8 7 39 39 H 1.08006 * 119.95801 * 180.02562 * 19 18 8 40 40 H 1.08991 * 109.46940 * 319.75463 * 20 3 2 41 41 H 1.08998 * 109.46740 * 79.75125 * 20 3 2 42 42 H 0.96697 * 113.99769 * 64.79635 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4393 1.4415 -0.3732 5 6 3.5997 1.0045 -1.8065 6 6 3.8189 -0.3288 -2.1011 7 6 3.9606 -0.7332 -3.4140 8 6 3.8945 0.2025 -4.4381 9 8 4.0398 -0.1910 -5.7292 10 6 4.0767 0.7795 -6.6644 11 1 4.0673 1.8175 -6.3662 12 6 4.1269 0.4450 -8.0091 13 7 4.1389 -0.8193 -8.3724 14 14 4.1773 1.7897 -9.3048 15 1 5.3840 2.6304 -9.0990 16 1 4.2279 1.1741 -10.6553 17 1 2.9607 2.6334 -9.1901 18 6 3.6800 1.5415 -4.1388 19 6 3.5325 1.9385 -2.8243 20 6 1.7921 2.0238 1.3032 21 6 1.8417 3.5444 1.1413 22 1 2.8110 3.8353 0.7364 23 8 0.8074 3.9623 0.2481 24 6 1.6381 4.2093 2.5042 25 9 2.6506 3.8001 3.3786 26 9 1.6829 5.5996 2.3562 27 9 0.3939 3.8359 3.0239 28 1 -0.3633 -1.0276 0.0171 29 1 -0.3633 0.5285 0.8814 30 1 -0.3633 0.4989 -0.8984 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8040 2.4626 -0.2617 34 1 4.0121 0.7783 0.2750 35 1 3.8753 -1.0551 -1.3038 36 1 4.1273 -1.7753 -3.6436 37 1 4.1744 -1.0533 -9.3130 38 1 3.6285 2.2715 -4.9329 39 1 3.3652 2.9797 -2.5908 40 1 0.8144 1.7309 1.6856 41 1 2.5656 1.7074 2.0029 42 1 -0.0868 3.8018 0.5792 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275031389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:16 Heat of formation + Delta-G solvation = -199.962140 kcal Electronic energy + Delta-G solvation = -28904.766542 eV Core-core repulsion = 24242.803786 eV Total energy + Delta-G solvation = -4661.962756 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.49929 -48.02891 -47.95832 -39.44270 -38.58700 -37.09520 -35.89178 -32.37268 -31.64395 -30.97689 -30.15385 -28.80332 -26.13011 -25.36582 -24.22003 -22.67984 -22.01863 -21.21235 -20.20604 -18.99874 -18.86043 -18.62329 -17.98574 -16.99051 -16.55205 -16.13657 -15.33803 -15.08402 -14.80525 -14.75421 -14.58033 -14.51616 -14.40992 -14.29910 -14.11988 -14.09952 -14.07065 -13.57051 -13.49186 -13.34127 -13.14241 -12.69661 -12.29389 -12.20665 -11.99926 -11.71593 -11.69090 -11.37230 -11.15804 -10.96718 -10.82211 -10.72204 -10.62760 -10.45588 -10.41620 -9.35373 -8.82980 -8.39390 -8.15349 -7.18384 -6.45353 -4.03873 2.16487 2.23388 2.32491 3.13728 3.14278 3.17521 3.21083 3.39779 3.57930 3.97020 3.98558 4.10940 4.37575 4.53037 4.64707 4.95783 5.09467 5.11177 5.15655 5.18038 5.25241 5.34636 5.44377 5.53829 5.69815 5.74362 5.80527 5.85570 6.04020 6.20636 6.21685 6.42286 6.68888 6.85727 6.92288 6.96493 7.04339 7.09177 7.24650 7.41048 7.44663 7.82546 7.99777 9.00434 9.70337 10.72630 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018655 B = 0.002512 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.579163 B =11142.687759 C =11859.094417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 N -0.517 5.517 4 C 0.110 3.890 5 C -0.180 4.180 6 C -0.069 4.069 7 C -0.194 4.194 8 C 0.156 3.844 9 O -0.177 6.177 10 C -0.391 4.391 11 H 0.092 0.908 12 C 0.040 3.960 13 N -0.863 5.863 14 Si 0.940 3.060 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.269 1.269 18 C -0.234 4.234 19 C -0.046 4.046 20 C 0.016 3.984 21 C 0.080 3.920 22 H 0.140 0.860 23 O -0.511 6.511 24 C 0.417 3.583 25 F -0.181 7.181 26 F -0.176 7.176 27 F -0.185 7.185 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.271 0.729 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.754 6.605 21.479 23.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 N -0.241 5.241 4 C -0.016 4.016 5 C -0.182 4.182 6 C -0.088 4.088 7 C -0.214 4.214 8 C 0.102 3.898 9 O -0.081 6.081 10 C -0.468 4.468 11 H 0.109 0.891 12 C -0.165 4.165 13 N -0.498 5.498 14 Si 0.765 3.235 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.194 1.194 18 C -0.254 4.254 19 C -0.064 4.064 20 C -0.113 4.113 21 C 0.018 3.982 22 H 0.158 0.842 23 O -0.315 6.315 24 C 0.362 3.638 25 F -0.162 7.162 26 F -0.157 7.157 27 F -0.166 7.166 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.074 0.926 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -5.489 6.684 20.445 22.199 hybrid contribution -0.043 0.268 0.623 0.680 sum -5.532 6.952 21.069 22.865 Atomic orbital electron populations 1.21785 0.95066 1.01339 1.02183 1.22218 0.95993 0.88302 1.01706 1.61929 1.18773 1.17741 1.25690 1.20892 0.86685 1.00300 0.93768 1.18958 1.12139 0.93681 0.93392 1.20455 0.98765 0.94629 0.94950 1.20145 1.11405 0.98765 0.91047 1.19400 0.91999 0.92308 0.86056 1.83982 1.77952 1.35386 1.10741 1.21285 1.52717 0.87643 0.85126 0.89095 1.25285 0.96539 0.97561 0.97089 1.70024 1.45955 1.16220 1.17597 0.85789 0.79238 0.79477 0.78998 1.19485 1.20294 1.19445 1.21165 1.11062 0.96317 0.96836 1.20559 0.95984 0.98040 0.91859 1.22767 1.03338 0.92366 0.92807 1.23187 0.96350 0.94604 0.84082 0.84244 1.86792 1.17078 1.84470 1.43168 1.21838 0.74044 0.78003 0.89880 1.93194 1.60470 1.90152 1.72406 1.93219 1.96014 1.30664 1.95831 1.93174 1.43460 1.91195 1.88798 0.92431 0.93415 0.91468 0.88846 0.95260 0.91011 0.94674 0.87523 0.86665 0.91962 0.85620 0.87458 0.89170 0.92615 0.77079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.99 37.16 0.37 -1.06 16 2 C 0.04 0.50 5.52 -3.82 -0.02 0.48 16 3 N -0.52 -5.83 4.27 -236.07 -1.01 -6.84 16 4 C 0.11 1.36 4.94 -4.97 -0.02 1.33 16 5 C -0.18 -2.91 4.93 -104.58 -0.52 -3.42 16 6 C -0.07 -1.17 7.84 -39.61 -0.31 -1.48 16 7 C -0.19 -3.99 9.99 -39.39 -0.39 -4.38 16 8 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 9 O -0.18 -5.03 9.76 0.06 0.00 -5.03 16 10 C -0.39 -10.90 9.45 30.89 0.29 -10.60 16 11 H 0.09 2.34 5.27 -52.49 -0.28 2.07 16 12 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 13 N -0.86 -25.24 13.67 55.48 0.76 -24.48 16 14 Si 0.94 20.47 29.55 -169.99 -5.02 15.44 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 18 C -0.23 -5.04 9.14 -39.39 -0.36 -5.40 16 19 C -0.05 -0.82 9.69 -39.61 -0.38 -1.21 16 20 C 0.02 0.14 4.26 -3.82 -0.02 0.12 16 21 C 0.08 0.69 3.05 -26.73 -0.08 0.61 16 22 H 0.14 1.19 6.75 -51.93 -0.35 0.84 16 23 O -0.51 -4.94 13.18 -35.23 -0.46 -5.41 16 24 C 0.42 3.57 2.85 37.16 0.11 3.67 16 25 F -0.18 -1.63 16.77 2.25 0.04 -1.59 16 26 F -0.18 -1.75 17.26 2.25 0.04 -1.71 16 27 F -0.18 -1.55 16.36 2.25 0.04 -1.51 16 28 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.05 0.40 6.50 -51.93 -0.34 0.06 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.22 5.16 -51.93 -0.27 0.95 16 32 H 0.03 0.29 8.05 -51.93 -0.42 -0.13 16 33 H 0.07 0.81 6.56 -51.93 -0.34 0.47 16 34 H 0.04 0.40 8.06 -51.93 -0.42 -0.02 16 35 H 0.11 1.50 7.75 -52.49 -0.41 1.09 16 36 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 37 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.13 2.74 5.70 -52.49 -0.30 2.44 16 39 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 40 H 0.09 0.70 5.92 -51.93 -0.31 0.39 16 41 H 0.06 0.45 7.62 -51.93 -0.40 0.05 16 42 H 0.38 2.48 8.61 45.56 0.39 2.87 16 LS Contribution 358.62 15.07 5.40 5.40 Total: -1.00 -30.90 358.62 -6.17 -37.06 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -4.25 Total: 5.54 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -1.69 Total: -16.89 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: -0.25 Total: -31.32 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -0.46 Total: -10.44 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.11 Total: -4.81 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.90 -6.17 -37.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275031389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.899 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds