Wall clock time and date at job start Tue Mar 31 2020 18:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46897 * 109.46743 * 2 1 4 4 C 1.46903 * 110.99718 * 195.79125 * 3 2 1 5 5 C 1.50699 * 109.47063 * 66.04747 * 4 3 2 6 6 C 1.38298 * 119.93280 * 269.72477 * 5 4 3 7 7 C 1.38103 * 120.06932 * 179.72508 * 6 5 4 8 8 C 1.38878 * 119.92611 * 0.56936 * 7 6 5 9 9 O 1.35748 * 120.06500 * 179.68365 * 8 7 6 10 10 C 1.34830 * 117.00005 * 185.38313 * 9 8 7 11 11 H 1.08001 * 120.00356 * 4.60987 * 10 9 8 12 12 C 1.38659 * 120.00012 * 184.60950 * 10 9 8 13 13 N 1.31551 * 120.00005 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99751 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47362 * 60.00176 * 14 12 10 16 16 H 1.48505 * 109.46957 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47135 * 299.99872 * 14 12 10 18 18 C 1.38878 * 119.86804 * 359.70690 * 8 7 6 19 19 C 1.38104 * 119.92396 * 359.97438 * 18 8 7 20 20 C 1.46906 * 111.00063 * 71.84020 * 3 2 1 21 21 C 1.53001 * 109.47095 * 199.75210 * 20 3 2 22 22 H 1.08994 * 109.47088 * 301.34296 * 21 20 3 23 23 O 1.42904 * 109.46690 * 61.34405 * 21 20 3 24 24 C 1.53002 * 109.46983 * 181.34385 * 21 20 3 25 25 F 1.39899 * 109.47154 * 60.00022 * 24 21 20 26 26 F 1.39895 * 109.47077 * 180.02562 * 24 21 20 27 27 F 1.39909 * 109.46645 * 300.00133 * 24 21 20 28 28 H 1.09011 * 109.46883 * 180.95349 * 1 2 3 29 29 H 1.09001 * 109.47133 * 300.94734 * 1 2 3 30 30 H 1.08997 * 109.47050 * 60.95521 * 1 2 3 31 31 H 1.08999 * 109.47154 * 240.00346 * 2 1 3 32 32 H 1.08998 * 109.47113 * 120.00235 * 2 1 3 33 33 H 1.09000 * 109.47033 * 186.04993 * 4 3 2 34 34 H 1.08997 * 109.47401 * 306.04642 * 4 3 2 35 35 H 1.08000 * 119.96151 * 359.97438 * 6 5 4 36 36 H 1.08001 * 120.03129 * 180.27432 * 7 6 5 37 37 H 0.96997 * 119.99993 * 180.02562 * 13 12 10 38 38 H 1.07992 * 120.03746 * 179.97438 * 18 8 7 39 39 H 1.08006 * 119.95801 * 180.02562 * 19 18 8 40 40 H 1.08991 * 109.46940 * 319.75463 * 20 3 2 41 41 H 1.08998 * 109.46740 * 79.75125 * 20 3 2 42 42 H 0.96697 * 113.99769 * 64.79635 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4393 1.4415 -0.3732 5 6 3.5997 1.0045 -1.8065 6 6 3.8189 -0.3288 -2.1011 7 6 3.9606 -0.7332 -3.4140 8 6 3.8945 0.2025 -4.4381 9 8 4.0398 -0.1910 -5.7292 10 6 4.0767 0.7795 -6.6644 11 1 4.0673 1.8175 -6.3662 12 6 4.1269 0.4450 -8.0091 13 7 4.1389 -0.8193 -8.3724 14 14 4.1773 1.7897 -9.3048 15 1 5.3840 2.6304 -9.0990 16 1 4.2279 1.1741 -10.6553 17 1 2.9607 2.6334 -9.1901 18 6 3.6800 1.5415 -4.1388 19 6 3.5325 1.9385 -2.8243 20 6 1.7921 2.0238 1.3032 21 6 1.8417 3.5444 1.1413 22 1 2.8110 3.8353 0.7364 23 8 0.8074 3.9623 0.2481 24 6 1.6381 4.2093 2.5042 25 9 2.6506 3.8001 3.3786 26 9 1.6829 5.5996 2.3562 27 9 0.3939 3.8359 3.0239 28 1 -0.3633 -1.0276 0.0171 29 1 -0.3633 0.5285 0.8814 30 1 -0.3633 0.4989 -0.8984 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8040 2.4626 -0.2617 34 1 4.0121 0.7783 0.2750 35 1 3.8753 -1.0551 -1.3038 36 1 4.1273 -1.7753 -3.6436 37 1 4.1744 -1.0533 -9.3130 38 1 3.6285 2.2715 -4.9329 39 1 3.3652 2.9797 -2.5908 40 1 0.8144 1.7309 1.6856 41 1 2.5656 1.7074 2.0029 42 1 -0.0868 3.8018 0.5792 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275031389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:15 Heat of formation + Delta-G solvation = -221.595976 kcal Electronic energy + Delta-G solvation = -28905.704656 eV Core-core repulsion = 24242.803786 eV Total energy + Delta-G solvation = -4662.900870 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.17251 -48.68535 -48.65952 -40.88233 -39.73188 -38.32709 -37.05856 -34.31354 -32.52298 -32.09337 -31.70843 -29.86678 -27.61023 -26.68598 -25.33271 -23.71678 -23.23027 -22.46956 -21.37415 -19.82466 -19.66353 -19.55265 -19.29847 -18.80206 -17.34288 -17.04482 -16.44676 -16.30117 -16.03036 -15.94698 -15.52447 -15.48235 -15.40660 -15.26244 -15.13479 -15.07669 -14.90454 -14.80345 -14.76596 -14.43818 -14.26495 -14.10490 -13.62929 -13.47935 -13.01216 -12.95368 -12.77390 -12.50486 -12.44561 -12.32798 -12.15583 -12.05944 -11.97400 -11.67772 -11.30392 -11.16554 -10.76705 -9.71683 -9.24538 -8.85545 -8.46038 -6.13664 0.63524 0.71068 1.35596 1.46015 1.51582 1.58041 2.18997 2.49295 2.74798 2.82977 2.92313 3.11557 3.37821 3.49434 3.53884 3.71787 3.87307 4.00196 4.09862 4.22980 4.26219 4.39455 4.46356 4.56652 4.59736 4.64905 4.71480 4.78159 4.84868 5.01726 5.11667 5.16634 5.20157 5.33463 5.41947 5.59447 5.75531 5.84109 6.04649 6.08070 6.13992 6.27694 6.50565 6.99056 7.80610 8.77198 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018655 B = 0.002512 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.579163 B =11142.687759 C =11859.094417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 N -0.530 5.530 4 C 0.110 3.890 5 C -0.150 4.150 6 C -0.058 4.058 7 C -0.205 4.205 8 C 0.114 3.886 9 O -0.233 6.233 10 C -0.413 4.413 11 H 0.100 0.900 12 C -0.022 4.022 13 N -0.921 5.921 14 Si 1.017 2.983 15 H -0.257 1.257 16 H -0.271 1.271 17 H -0.258 1.258 18 C -0.245 4.245 19 C -0.048 4.048 20 C 0.020 3.980 21 C 0.085 3.915 22 H 0.142 0.858 23 O -0.529 6.529 24 C 0.424 3.576 25 F -0.182 7.182 26 F -0.185 7.185 27 F -0.183 7.183 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.145 0.855 36 H 0.111 0.889 37 H 0.272 0.728 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.187 8.135 24.682 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 N -0.254 5.254 4 C -0.017 4.017 5 C -0.151 4.151 6 C -0.076 4.076 7 C -0.225 4.225 8 C 0.064 3.936 9 O -0.140 6.140 10 C -0.489 4.489 11 H 0.117 0.883 12 C -0.220 4.220 13 N -0.560 5.560 14 Si 0.836 3.164 15 H -0.182 1.182 16 H -0.196 1.196 17 H -0.182 1.182 18 C -0.264 4.264 19 C -0.066 4.066 20 C -0.108 4.108 21 C 0.023 3.977 22 H 0.160 0.840 23 O -0.335 6.335 24 C 0.369 3.631 25 F -0.163 7.163 26 F -0.167 7.167 27 F -0.165 7.165 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.163 0.837 36 H 0.129 0.871 37 H 0.081 0.919 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.120 0.880 41 H 0.089 0.911 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -5.939 8.231 23.724 25.804 hybrid contribution 0.018 -0.190 0.074 0.205 sum -5.920 8.040 23.798 25.807 Atomic orbital electron populations 1.21748 0.94396 1.01874 1.02005 1.22218 0.96609 0.88148 1.01429 1.61791 1.17702 1.18130 1.27782 1.20930 0.88075 1.01792 0.90909 1.19500 1.07306 0.92836 0.95491 1.20851 0.96671 0.95971 0.94096 1.20416 1.11587 0.98350 0.92100 1.19945 0.94102 0.94151 0.85410 1.83940 1.81259 1.36339 1.12478 1.21754 1.53030 0.88214 0.85889 0.88310 1.26560 0.95935 1.00284 0.99201 1.70171 1.48948 1.18770 1.18093 0.84678 0.79917 0.76207 0.75616 1.18168 1.19589 1.18224 1.21240 1.11581 0.95218 0.98352 1.20866 0.95238 0.99859 0.90656 1.22793 1.04554 0.91946 0.91534 1.23162 0.96268 0.94542 0.83750 0.84020 1.86762 1.18150 1.84719 1.43901 1.21793 0.74007 0.77500 0.89843 1.93194 1.60556 1.90094 1.72493 1.93204 1.96064 1.31541 1.95879 1.93180 1.43376 1.91104 1.88804 0.91719 0.91614 0.93503 0.91178 0.93328 0.89299 0.92553 0.83717 0.87064 0.91858 0.86835 0.84911 0.87959 0.91140 0.75684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.99 71.98 0.72 -1.67 16 2 C 0.04 0.79 5.52 86.31 0.48 1.27 16 3 N -0.53 -9.75 4.27 -900.79 -3.85 -13.60 16 4 C 0.11 2.20 4.94 85.56 0.42 2.62 16 5 C -0.15 -4.39 4.93 -19.84 -0.10 -4.49 16 6 C -0.06 -1.81 7.84 22.25 0.17 -1.64 16 7 C -0.21 -8.56 9.99 22.39 0.22 -8.34 16 8 C 0.11 5.69 6.65 22.58 0.15 5.84 16 9 O -0.23 -14.17 9.76 -22.71 -0.22 -14.39 16 10 C -0.41 -24.31 9.45 67.92 0.64 -23.67 16 11 H 0.10 5.37 5.27 -2.91 -0.02 5.35 16 12 C -0.02 -1.29 5.49 84.84 0.47 -0.82 16 13 N -0.92 -57.02 13.67 21.61 0.30 -56.72 16 14 Si 1.02 43.28 29.55 68.60 2.03 45.30 16 15 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 16 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 18 C -0.24 -10.74 9.14 22.39 0.20 -10.53 16 19 C -0.05 -1.64 9.69 22.25 0.22 -1.42 16 20 C 0.02 0.26 4.26 86.30 0.37 0.63 16 21 C 0.09 1.15 3.05 30.60 0.09 1.25 16 22 H 0.14 1.86 6.75 -2.39 -0.02 1.84 16 23 O -0.53 -8.67 13.18 -148.98 -1.96 -10.63 16 24 C 0.42 5.94 2.85 71.98 0.20 6.15 16 25 F -0.18 -2.68 16.77 44.97 0.75 -1.92 16 26 F -0.19 -3.26 17.26 44.97 0.78 -2.48 16 27 F -0.18 -2.51 16.36 44.97 0.74 -1.77 16 28 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.06 0.85 6.50 -2.39 -0.02 0.84 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.62 5.16 -2.39 -0.01 1.61 16 32 H 0.05 0.73 8.05 -2.39 -0.02 0.71 16 33 H 0.09 1.56 6.56 -2.39 -0.02 1.54 16 34 H 0.06 0.96 8.06 -2.39 -0.02 0.94 16 35 H 0.15 3.49 7.75 -2.91 -0.02 3.47 16 36 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.11 5.16 5.70 -2.91 -0.02 5.14 16 39 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 40 H 0.10 1.11 5.92 -2.39 -0.01 1.09 16 41 H 0.07 0.76 7.62 -2.39 -0.02 0.74 16 42 H 0.39 4.03 8.61 -74.06 -0.64 3.39 16 Total: -1.00 -72.20 358.62 3.26 -68.94 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.44 Total: 22.12 kcal Atomic # 6 Polarization: -39.10 SS G_CDS: 4.26 Total: -34.83 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: -3.55 Total: -70.32 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -2.19 Total: -25.03 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 2.27 Total: -6.18 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -72.20 3.26 -68.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275031389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.658 kcal (2) G-P(sol) polarization free energy of solvation -72.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds